Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                   <---------------AtSPL8                                                 --------->DAG2                <---------At4g35610                                                 --------------->AtSPL8        --------->At4g35610                                                ---------->DOF2       <---------YAB1                                           --------->AHL20(2)         <-----------GT1                                        ----------->GT1             --------->YAB1      --------->At4g35610  ----------->GT1  --------->YAB1  ---------->DOF2   <-------TEIL--------->YAB1<---------ZAT14   aagaagggaaaatgaattctttcaaaatttgaaggcacaaagagattaaaaaaagtacataaaacaaaaattatactagacagcagtattagcttagact  1388100                            <---------bZIP60(2)                     ---------->DOF2              --------->ZAT14              <---------ZAT14         <---------ARR14(2)                           <---------AtLEC2              --------->At4g35610     --------->ARR14(2)                  --------->ANAC58              <---------At4g35610--------->MYB52(1)                       --------->ANAC58    <------         <---------GLK1(1)  <---------ANAC46              <xxxxxxxxxxxxxxxxsmallRNA(i)  ------->TEIL   atatagcttagagttctgcagtcaaaagtgatgtgcaacggattggagttagagcctagagggagagagagagagtaggcaatttgaatgaaactagata  1388200                            --------->ATHB12         ------->GAMYB                          <---------WOX13(1)         --------->TOE2(3)                        --------->ATHB12           ------>MYB83                      <--------P                   -------->P                      <---------WOX13(1)           ------>MYB46(1)                    --------->MYB55(2)        --------->ANAC58                    <---------MYB46(3)     --------->ZAT2                   <---------AtMYB61       <---------ZAT2                <-----------RAV1(1)        --------->At4g35610                                 ------               <---------ANAC46 <------MYB46(1)   <---------ATERF1(1) ------>MYB46(1)          ------    ------>ZmHOX2a(1)<-------GAMYB <-------TEIL   <---------ALFIN1    <---------REM1(2)        ------ ------>ZmHOX2a(1)<---------MYB52(1)    --------->MYB46(3)            ------>MYB83             <----- ---ARR11(3) --------->GLK1(2)  <------MYB83  --------->ANAC58      --------->AtMYB61        <-------   atcctccttctgaagtttctggtggttgattgataggtgcgaaccagcaggccaaccccaatgccaaaaacctacacagacaccaagaccaattcccaca  1388300                   <-----------GT1                --------->At4g35610     --------->SPL7        --------->MYB46(3)            <---------ZAT18    --------->WRKY38(1)               --------->ZAT14    --------->WRKY12                  <---------SPL7                                     <----------- --->ANAC58     <---------At4g35610  <---------ANAC58                                    ============ --->ANAC46--------->bZIP60(2)       <---------ANAC58                                    <----------- --->ANAC58--------->ANAC58         --------------->AtSPL8                ------>ZmHOX2a(1)   <------ ----ALFIN1--------->ANAC58      --------->At4g35610      <-----------RAV1(1)  <---------GLK1(2)----- --ALFIN1  --------->ANAC46 <-----------GT1       ------------>CBF --------->ZAT14     <---------ZAT14   ccagcgttgaaccacgacatctcaccatcttcaccatctgcgtactctctattccaatacatgtcgctgtgttctccttcatattcttgtttactgaatt  1388400                                   --------------->AGL15                                   <---------------AGL15                                  ----------------->AGL2                         <---------ANAC58                                  <-----------------AGL2                         <---------ANAC46                                  <-----------------AGL3                         <---------ANAC58                                  ----------------->AGL3           ------------>CBF     ------>NtERF2                                  <-----------------AGL1--------->AHL20(2)   <------------CBF ------AG----------->RAV1(1)      ----------------->AGL1<---------AHL20(2)<---------TOE2(3) ==================================================MADS_MADS      --------->ANAC58    <---------RAP2.6(2) ------AGL1             ------->TEIL                    <-----------TBP--------->ICU4*TSS<----------CDC5 ------CBF        <----------ID1--------->PCF2        <-----------TBP--------->WOX13(1) <---------At4g35610 ------>GT1   ---------->DOF2   <---------ZAT18  --------->TOE2(3)--------->ANAC58<-------GAMYB <----   ggaaataggcccaacaaaatgcgacgaatgttagggcccattaatggaaaacctatatttatatagataagcaattagggattgcgttgccgcttagctt  1388500                                                           <<<<<<<<<TBF1                                                       <----------DOF2                                                     ------>NtERF2                                                     <---------At4g35610                                                    --------->RAP2.3(2)                                                    --------->DEAR3(1)                                                   <------NtERF2                                                   --------->RAP2.3(1)                                                   --------->DEAR4(2)                                                   --------->ATERF1(1)                                                  <---------ATERF1(1)                                                  <---------RAP2.3(1)                                                  --------->ABI4(1)                                                  ------>NtERF2                               <----------DOF2   --------->RAP2.3(2)                             <---------At4g35610 --------->DEAR3(1)                             ------>NtERF2       <---------DEAR3(1)                            --------->DEAR3(1)   --------->ANAC46                           --------->DEAR4(2)    --------->RAP2.3(3)                           <------NtERF2        --------->RRTF1(1)                           --------->ATERF1(1)  --------->DEAR4(2)                           --------->RAP2.3(1)  --------->RAP2.6(1)                          <---------RAP2.3(1)   --------->ERF1                          ------>NtERF2         --------->ATERF1(1)                          <---------ATERF1(1)   <------NtERF2                     <---------ANAC46                         <---------DEAR3(1)     --------->ORA47(2)           --------->HSFB2a(1)                         --------->DEAR3(1)     --------->RAP2.3(1)          <---------HSFB2a(1)                        --------->ATERF1(1)    <---------RRTF1(1)         <---------ARR14(2)                   <---------ARR14(2)          <---------ATERF1(1)      <---------TOE1(2)                   --------->ARR14(2)          <---------RAP2.3(1)      <---------TOE2(2)               <------ZmHOX2a(2)               ------>NtERF2         --------->ANAC46       --------->DAG2  <-----------HVH21      --------->ANAC46<<<<<<<<<TBF1 <-------TEIL            <      ---------->DOF2 <---------ANAC58        --------->bZIP60(1)   ------>ZmHOX2a(1)               < ---TEIL--------->DAG2<---------ANAC58     ----------->HVH21 xxxxxxxxxxxxxxxx>smallRNA(i)           <   cgtctgaaaaaagggggatcagttccgtcgccgcttcttcgatttttgacgccgccgcttcttcttcttcctcgcaggtacgttctgggtaacttaggga  1388600                                                                                                   --                                                                                                  ---                                                                                                 <---                                                                                                -----                                                                                         <------MYB83                                                                                         <---------MYB46(3)                                                                                   <---------TOE2(2)                                                                                   <---------TOE2(3)            <---------ARR14(2)     <------MYB83                                    <---------TOE1(2)<         --------->ETT(1)      <----------DOF2                                ------->TEIL   --------    <-------GAMYB              <---------ANAC46                         <----------DOF2  <------MYB46(1) ---------ANAC58        <---------ANAC58                               <---------ANAC58 --------->MYB59 ---------ANAC46        <---------ANAC58       ---------->ID1          <---------ANAC58 <---------AtMYB61 ---------ANAC58    ---------->DOF2<------MYB46(1)            ---------->ID1 <---------CCA1(2) <-----   ttgcgtcgttgtcggaaactgcaaaagcttgtgctgtaggtttcgatttgttgtttttttttttgtctctgtagcttttgaatcttaggtttggttagat  1388700                                                         --------->At4g35610        --------->ARR11(3)                               ------>NtERF2        <---------ARR11(3)                       --------->ARR14(2)      <---------TOE2(3)                          <---------GLK1(2) ------->TOE2(3)                                 <---------ARR14(2) -------->GT1                                  --------->LBD16 ----TEIL                                    <---------LBD16 ---->ARR14(1)   --------->DAG2             --------->MYB52(1)                                      < ---------MYB52(1)     <---------YAB1  <---------AHL20(2)<---------At4g35610    <---------YAB1 <----- --->ARR10--------->MYB52(1)           <---------YAB1<-----------RAV1(1)<----------DOF2        <----- ----GLK1(2)    ---------->DOF2 <--------P <-----------GT1    ------->TEIL      <---------AHL20(2)  -   tcgttaataagataatggaaaagttatgaaatgggttgatttttattaccggatactgccgctgcatcttcattcttttagttttattgtatcaatggct  1388800          --------->YAB1          <---------ICU4         <---------YAB1               <---------ZAT6       --------->YAB1               <---------ANAC46      <---------YAB1              <---------ZAT14         <---------ANAC58 ---------MYB52(1)                --------->ZAT14         <---------ANAC58 ----ANAC58             --------->At4g35610         ------->TEIL ----ANAC58  --------->YAB1<-----------HVH21     <---------ANAC46--------->ATHB12         ----------- --------->ID1          <---------At4g35610      ----------->GT1<-------TEIL         --------->ICU4   tcgttgtttttataatcacattaggcctctgtcaagttcagtgttatggtgatgtatatttcttgattcatttgcaattctctagacattatttgacatt  1388900                                   <---------At4g35610                                   ----------->RAV1(2)                                   --------->At4g35610                                 --------->ATHB12                                 <---------ALFIN1                            <-------GAMYB  <--------                            <---------ZAT6                    <---------ATHB12 <---------MYB46(3)                          <---------ANAC46    <---------TOE2(3)              <---------ANAC58 >HVH21        ------>ZmHOX2a(1) --------->REM1(1)   --------->ANAC46        <---------ANAC58   <----   gcatttacatgtgattcctgtgtttgtttagtgttacacctgaatgttgatgtttaagacacaaatcaactatacacttggttgtttcttcatttgtcat  1389000  Previous    Next  AGI:  At5g04790.1    Description:  unknown protein Range:  from: 1388156    to: 1388320    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g04800.1    Description:  40S ribosomal protein S17 (RPS17D). Identical to 40S ribosomal protein S17-4 (RPS17D) [Arabidopsis Thaliana] (GB:Q9LZ17;GB:Q8LAE8); similar to 40S ribosomal protein S17 (RPS17A) [Arabidopsis thaliana] (TAIR:AT2G04390.1); similar to unknown [Populus trichocarpa] (GB:ABK94799.1); similar to unknown [Populus trichocarpa] (GB:ABK93281.1); contains InterPro domain Ribosomal protein S17e; (InterPro:IPR001210) Range:  from: 1388485    to: 1389849    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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