Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                        --------->ANAC46                      --------->ANAC58                      --------->ANAC58        <-----------GT1        <---------REM1(2)             <---------ANAC58       <-----------HVH21          --------->KAN4(2) -------HSFB2a(2)   --------->ANAC46  --------->TOE2(3) -GAMYB------>ZmHOX2a(1)       <---------ANAC46            --------->YAB1                        ---- --DEAR3(2)        <---------REM1(2)  <---------ANAC58<---------ARR14(2)                         ---- --MYB46(3)--------->ANAC46    <---------ANAC58       --------->ARR14(2)              --------->REM1(1) -DEAR3(1)<---------LBD16      <---------ANAC58 --------->ZAT6                ------->GAMYB      ----   caagaagtccttcacggcttctacacgaccttggcttattccttgatttaactgtatatactcatagtattcgttcgtaaccctccctacatcgacaaca  1352100                    <---------ARR11(3)                    --------->ARR11(3)                    <---------ARR14(2)                            --------->LBD16                    --------->ARR14(2)                           --------->ANAC58                   <---------CCA1(2)                             --------->ANAC58                  --------->ARR11(3)                            --------->ANAC46                  <---------ARR11(3)                            <---------LBD16                    --                  --------->AHL20(1)                         <---------ARR14(2)            --------->YAB1           ----------->GT1                                   --------->ARR14(2)           --------->AHL20(2)           --------->YAB1         <---------GLK1(2)         <---------GLK1(1)          --------->AHL20(2)          <---------YAB1    <---------ARR14(2)            <------MYB46(1)             <---------AHL20(2) ----->ANAC58     <---------AHL20(1)     <---------YAB1   <------MYB83                --------->AHL20(2) ----->ANAC58    --------->AHL20(2)   <---------YAB1     --------->MYB59          <---------AHL20(2) ----->ANAC46<---------YAB1 --------->ARR14(2)        <---------STY1(2)           --------->AHL20(2)   aggaatacacatatgataaatatatctgcatattcagattattatgctatgcgaatagctaggtatcccgcactatattcacatttaaataaataaaaat  1352200                                                                                      <---------WOX13(1)            ----------->GT1                                                 <----------DOF2        <-------TEIL                                                       <---------ANAC58       --------->CCA1(2)                                          ----------->GT1    <-------GAMYB  -  ---------->DOF2                <---------TOE1(2)      <---------ICU4     <---------ANAC58        -- ------->At4g35610              ------>ZmHOX2a(1)    --------->YAB1        <---------ANAC46      ----   catctaaagatacaatgtgaataaactagtactcctaagtttgaaactgagacattgataatgccttcttgtaaattgcttataggcgattgattttgcc  1352300                                               ------->TEIL                                               <---------ARR11(1)                                               <---------ARR14(2)                                               --------->GLK1(2)                              -------                                               --------->ARR14(2)                       --------->ARR14(2)                              <---------ZAT2  <---------GLK1(2)                      --------->HSFC1(1)                              <---------At4g35610                                    <---------HSFC1(1)                           ---------->DOF2 --------->SPL7                            --------->HSFB2a(2)                        <---------ANAC58 <---------SPL7                              <---------HSFB2a(2)                        <---------ANAC58 <---------RAP2.6(3)                        <---------LBD16                        <---------ANAC46<---------ANAC58                           ----------->RAV1(2)             --------->ARR11(3)         <---------ANAC58                        <<<<<<<<<TBF1 <------            <---------GLK1(1) --------->ZAT2  <---------ARR14(1)               <---------------AGL15            --------->GLK1(1) --------->At4g35610    <---------YAB1           ======================= ---------->GT1--------->TOE2(3)   <---------At4g35610                        <-----------------AGL3 ------->ZAT6<---------ARR11(3)    --------->At4g35610                        <-----------------AGL1 ------->RAV1(1)      <---------At5g28300------>NtERF2                    <---------At4g35610 <------   aacagtaatatgagaaatcttaagtaccgtgaagctgagatgccgtccgaatctgaagattgaattgatcacatggagcttcttcttctggaacttcttt  1352400                                                                                          -----------                                                                             ------>ZmHOX2a(1)                                                                           =======================HOX2a_HOX2a                                                                           ------>ZmHOX2a(2)                                                                          <------ZmHOX2a(2)      ----                       ----------->HVH21                                  ========================HOX2a_HOX2a                     <---------At4g35610                                 <---------ARR14(2)      <---                     --------->At4g35610                                 --------->ARR14(2)     <----         <---------GLK1(1)<---------ANAC46                               <---------ARR11(3)   -------       <------ZmHOX2a(1)  <---------ANAC58                               --------->ARR11(3)------>ZmHOX2a(1) -------->AGL15     --------->ARR14(2)                        --------->ARR14(2)     <---------HSFC1(2) ----DOF2--------->GLK1(1)<---------ANAC58       <----------DOF2   ---------->DOF2   --------->HSFC1(2) =========MADS_MADS <---------ARR14(2)  --------->AtLEC2      --------->GLK1(2)   <---------At4g35610 ---------AGL15 <---------LBD16  <------ZmHOX2a(1)            <---------ARR14(2)<-----------RAV1(2)   tataggtgaggaactctcttcggaactgacttgtaggacaccatgaaaaaactttgttttagcgaatttgaaagggatcctctcagatgtttcctccaaa  1352500                                                     --------->MYB52(1)                                                  --------->TOE1(3)                                                  --------->TOE2(3)                                                  ------->GAMYB                               <------                                                ------>MYB83                     ------>MYB83 -------                                                ------>MYB46(1)                  ------>MYB46(1)                                              <---------MYB111(1)               --------->MYB52(1)  <          --------->ATHB12                    --------->AtMYB61                --------->AtMYB61    -        <---------WOX13(1)             <---------ANAC58                 --------->ANAC58      <------ ---------->WRI1                ---------->DOF2 -------->P      <---------AHL20(2)           <------ZmHOX2a(1) ----->HSFC1(2)           ----------->GT1     --------->MYB46(3)--------->AHL20(2) ------->GAMYB   <- ------HSFC1(2)     --------->ATHB12   <---------ANAC58   <---------GLK1(2)   --------->MYB46(3) <--- -------ARR10       <---------ICU4     <---------ANAC46--------->YAB1   --------->ANAC58   <---------TOE1(3) --->DOF2<---------AHL20(2)  --------->YAB1   <---------MYB59----------->GT1 >>>>>>>>>MYB2 <---------TOE2(3)   gcttcgcctaattgattagaactcattgctgtaataaagtttcttggaccaaccctaacagaatattaaaaaacaagaaaaccaacggtatttgaggata  1352600     <---------AHL20(2)                                                                         <----     --------->AHL20(2)                                                                         <----     <-----------TBP                                                                            <----   <-----------TBP                                                                           <------- <---------AHL20(2)                                            <---------WOX13(1)            <------- ---ARR11(3)                       <----------DOF2            <------------CBF               <------- -->ARR14(2)              --------->YAB1                     --------->ATHB12                <------- ---------AHL20(1)       <---------YAB1            --------->YAB1                        ------>ZmHOX2a(1) -------->AHL20(1)   ------->GAMYB--------->ATHB12 --------->TOE2(3)               <---------ARR11(3) ---ARR14(2)        <------------MYB.PH3(1)     <---------CCA1(2)     <-----------GT1    <----------DOF2 --------AHL20(2) --------->MYB52(1)   ---------->ID1     <----------DOF2          --------->ARR11(3) --------TBP   --------->YAB1------------>CBF<-----------GT1<---------YAB1       --------->GLK1(2)   tatatatttatatagagtcataacggtatcatacaatctttggtgtttttctatcttattctttgattgattttacatatgagaatatatcctttgcttg  1352700                      <---------ARR11(3)                      <---------GLK1(2)             <------------CBF           <---------AHL20(2)        <-----------------AGL3       <---------AHL20(2)      --------->AHL20(2)      <---------AHL20(2)                                                   ----------->RAV1(1)     <---------WOX13(1)                                                   <----------ID1  --------->ICU4      --------->ARR11(3)                                  <---------ETT(1) -----MYB46(3)      ----------->ARR10                               <---------AHL20(2) --MYB83<-----------------AG                                        ----------->TBP --MYB46(1)--------->AHL20(2)                   <-------TEIL        --------->AHL20(2) --ANAC46 <---------AHL20(2)                   --------->ARR14(2) ----------->TBP--------->AHL20(2) --ANAC58 <---------AHL20(1)              ---------->DOF2        --------->AHL20(1) --AtLEC2 --------->AHL20(2)<----------DOF2 <---------TOE2(3)    <---------AHL20(1)               --- --ANAC58<---------------AGL15      ----------->GT1             --------->AHL20(2)    ---------->DOF2   gttactgattaatttaattggaaagattttcttttggacagaaataaaggttcttctatatgaaaaatatataaatccgacaaaaaaataaagaagctcg  1352800                       --------->ANAC58                       --------->ANAC46                       --------->ANAC58               <---------TOE1(3)        <------------CBF      --------->AHL20(1)                  <----------DOF2      --------->AHL20(2)                  ================================================MADS_MADS      <---------AHL20(2)                  <---------------AGL15                  ----------->GT1      <---------AHL20(1)             <---------At4g35610                  --------------->AGL15 ------>SPL7   <---------TOE2(3)<----------DOF2                           <---------------AGL15   tacagtattttattgtcaaggtttcaagacatgtcttttggctgctttaactagtcagttttttgcacagttcatacttcatagggtgatatagtttgtc  1352900              --------->AHL20(2)              <---------AHL20(2)          <--------HAHB4          -------->ATHB1          --------->ATHB51               --------->DAG2          <---------AHL20(2)            --------->DAG2                                       --------          --------->AHL20(2)            ---------->DOF2     --------->AHL20(2)              ------>MYB83         <---------ATHB51         --------->ZAT6     --------->YAB1                         ------>MYB46(1)         --------->ICU4           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            ---------->DOF2 <- --------->TOE2(3)           <----------DOF2    --------->At4g35610        <---------YAB1  ---------- --------->TOE1(3)  <---------AHL20(2) ---------->DOF2    --------->AHL20(2)    <-----------GT1  ----   aaaccctaacaattatttatatataaacgcgctttaacacaaaaaggcacagctataaaaaaaaatataaaaccattacaatttacaaagtaccaacagt  1353000  Previous    Next  AGI:  At5g04690.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G04700.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G04680.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64101.1); contains InterPro domain Ankyrin (InterPro:IPR002110) Range:  from: 1349644    to: 1352526    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version