Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -            <---------AHL20(2)                                                               <-------            --------->AHL20(2)                                                        ---------->DOF2            <---------ICU4                                                        --------->HSFB2a(2)            --------->ATHB51                               ------>MYB83           <---------HSFB2a(2)           --------->ICU4                        <-----------GT1                 <-----------------AGL1           <---------ATHB12              <------------MYB.PH3(1)               <----------DOF2    <--           <---------ATHB51            <-----------GT1     ------>MYB46(1)   <---------DAG2  <-------         --------->YAB1                --------->MYB52(1)<---------MYB59  <-----------GT1    -------- --------->GT1                      ------>MYB46(1)<---------ANAC55(2)<---------AHL20(2)     -------- ----TOE2(3)<--------ATHB1          ------>MYB83<---------YAB1       --------->AHL20(2)  ----------->GT1   ctagtataaactaataatttagatggtttgactaaaccaaataactgtttattactgaaccaaattttcgattaaatcactctttcagaaaaggaaattt  1332400          ---------->DOF2                                      ----------->GT1                ------>MYB46(1)    ---------->DOF2                                           --------->DAG2                 -------- ---------->HVH21                                            ---------->DOF2                 -------- --HSFC1(2)                       --------->AHL20(2)      <---------ANAC55(2)                -------- --------DOF2             --------->ATHB12         <---------GLK1(2)                       --------->MYB46(3) --HSFB2a(1)             <---------YAB1     --------->ICU4--------->ANAC46          <-----------GT1 ->HSFB2a(1) ----------->GT1      <---------AHL20(2)      --------->ANAC58     <---------MYB46(3) --- ->HSFC1(2)--------->DAG2--------->ICU4   --------->ATHB12--------->ANAC58     ----------->GT1------>MYB83   ctttgacaaaggaaaaggaaacatatacttattggattaattagtgattagtagattatcacgaaaaggaaatagaatcgatggtttaactgaaccagcc  1332500               <----------DOF2        <-----------RAV1(2)   --------->MYB52(2) <---------MYB52(1)                       --------->GLK1(1)           <-----------RAV1(2) <--------P    <---------DAG2       ---------->DOF2          <------MYB46(1) <----------DOF2 ->ANAC46     <---------ANAC58  <---------------AGL15        <---------MYB46(3)       <---------ICU4 ->ANAC58     <---------ANAC58 ----------------->AGL3        <------MYB83 <---------DEAR3(1) ->ANAC58 <---------At4g35610  <-----------------AGL1       --------->MYB59<---------MYB46(3)      -- ------>ICU4 <-------TEIL <---------TOE2(3)    <------------CBF <-------TEIL<-------GAMYB   <--------   atggttagtttcaggtgcttttcgagttaagttttcaaaaaaggaaatcgattgtacttagtttggttcgtctcaggcggtttaagagtcattactttca  1332600            --------->YAB1           <---------YAB1         --------->YAB1         <---------ICU4        <---------AHL20(2)        --------->AHL20(2)        --------->ICU4                                   ----------->GT1  ----------->GT1                                      --------->DAG2               ----------->GT1 ----------->GT1                               <-----------HVH21         --------->ATHB12 -------->DOF2<---------YAB1                <------------CBF           <---------WOX13(1) --DOF2 <---------ATHB51           --------->ATHB12   ---------->DOF2 <------------CBF <-----------GT1   aaaaaggaaaataattatacttagttcgtttaatcactgattagctaattgtcagaaaaaggaaatatagtcgattgattagaaacgagtaacaacacag  1332700                                                                                   <-----------GT1                                                                              <----------DOF2                                                  ----------->RAV1(1)  <------------------------ANAC81                                               --------->ANAC58     --------->RVE1(1)                                               --------->ANAC58    --------->ARR11(3)           <----                                        <---------GLK1(2)          <---------ARR11(3)       <--------         --------->ANAC46            --------->YAB1         --------->ZAT6   <-----------------------   ----------->TBP                <---------CCA1(2)  ------->GAMYB --------->GLK1(2)   ------>ZmHOX2a(1)   agtctatatatacacgattagaaacagagagtagccatatcatattctttcgcaacaggctaacacaaaaatctctctgtctttttctccttctctttct  1332800                                 --------->REM1(2)                              <---------ANAC46                              <---------ANAC58                              <---------ANAC58                             <-----------------------TaNAC69(2)                                  ----                             <------NtERF2                                                       ----                           <---------DEAR3(1)                                          <----------DOF2                           <---------RAP2.3(3)          ----------->HVH21             <---------ANAC58                          <---------ANAC58            --------->At4g35610          <---------MYB52(1)                          <---------ANAC58            <---------At4g35610        <---------MYB46(3) ------DOF2              --------->ALFIN1   --------->GLK1(1)                    <-----------RAV1(1) --DOF2                --------->ALFIN1    <---------ARR11(3)            <-------TEIL <---------ANAC58 -ANAC81          --------->ANAC46         --------->ARR11(3)           --------->CCA1(2)        ----   ttgtctgtgaaatcgtgaacacagaatggggggcgtgaagagaaagatttctatagagctgatagagaagaaagattcaagagctgttgctttctcaaaa  1332900                                             --------->At4g35610                               <----------DOF2                        <---------ALFIN1  --------->ALFIN1            ------>ZmHOX2a(2)                     <---------ALFIN1 ----->ANAC58               --------->ARR11(3)                --------->YAB1 ----->ANAC46               <---------ARR11(3)               <---------YAB1<---------MYB52(1) ----->ANAC58     ---------->DOF2  ---------->ID1            <------ZmHOX2a(2)         <---------ATHB12   cgcagtaggggtctatatagcaaagcctctgatctttgtcttctctccgatgcacaaattgcgatcatagccactccggtctcttccaaatcaaacgttt  1333000                                                                        --------->ARR11(3)                                                                        <---------ARR11(3)                                                                       <------MYB46(1)                                                                  --------->HSFB2a(2)                                                                  <---------HSFB2a(2)                                                                ------>ZmHOX2a(1)                                                                <---------LBD16                                  <---------REM1(1)         <---------ZAT18   <---------ZAT6                              <---------TOE1(3)    --------->ANAC58    <------MYB83        <----------DOF2       <---------TOE2(3)    --------->ANAC46   <---------AtMYB61           ---       <---------DAG2        <---------DOF5.7(2)   --------->ANAC58  <--------P             <--------    --------->REM1(1)  <-------GAMYB            ------>ZmHOX2a(1)<---------LBD16         <---------AtMYB61    <---------ALFIN1------>ZmHOX2a(1)      <----------DOF2--------->At4g35610<---------TOE1(3)    <--   ctttctacacctttggccattcctctgttgataacgttgtagccgctttcctcacgaatcagcgtcctcgggaaggtctagggttagactattggtggga  1333100                                                                                    --------->GLK1(1)                                                                                   --------->ARR14(2)                                                                             ----------->HVH21                                                                            ------>ZmHOX2a(2)                                                                            =============HOX2a_HOX2a                                                                           <------ZmHOX2a(2)                                                                           ==============HOX2a_HOX2a                                                                           --------->CCA1(2)                                          --------->ANAC58                --------->ARR11(3)                                <---------ARR14(2)                        --------->AGP1                                --------->ARR14(2)                        --------->ARR14(2)                       <---------ARR14(2) --------->ANAC46                <---------ARR14(2)           --------->YAB1      <------ZmHOX2a(1)                          <---------ARR11(3) ------>At4g35610     <------ZmHOX2a(1)   --------->ANAC58                <---------AGP1 -ANAC46<----------DOF2--------->ARR14(2) --------->ANAC55(2)   <---------ARR11(3) <---------ARR14(2) -------At4g35610  --------->At4g35610  --------->CCA1(2)       --------->ARR11(3)<------ZmHOX2a(1)   agatgagaggctttcaaaatcagaggacctggaggaactgagagacgcaatggactcgatgtcgaagatgttgaaagatctgaaggatttgcagaatcaa  1333200                                                  ---------->DOF2                                          --------->GLK1(1)                                      --------->ANAC58                     >>>>>>>>>TBF1    --------->ANAC55(1)              <---------ANAC46        --------->ANAC46      <----------DOF2              <---------ANAC58        --------->ANAC55(2)  --------->TOE1(3)    <---------ANAC46              <---------ANAC58        --------->ANAC58     --------->TOE2(3)    ----------->GT1            <------ZmHOX2a(1)        <---------LBD16--------->ANAC58     --------->YAB1         <------ZmHOX2a(1)         <---------REM1(2)--------->ANAC58------>ZmHOX2a(1)         -------   cgagattgtgaggaggacgtgaagaagaagggtgttttacacggaactcatcaaaagcaaacctttaatcctgaatcatgttctgtgaatttcgatgggt  1333300  Previous    Next  AGI:  At5g04640.1    Description:  AGL99; DNA binding / transcription factor. similar to AGL97, DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G46408.1); similar to unknown [Brassica oleracea] (GB:ABB83614.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) Range:  from: 1332826    to: 1333794    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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