Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                      ------>ZmHOX2a(2)                                         <---------LBD16           <---------GLK1(1)              ---                                   ----------------->AGL1          <------ZmHOX2a(2)              ---                                  --------->MYB52(1)               --------->GLK1(1)           ------                                 <-----------GT1                  --------->ARR14(2)           ------                           ------>ZmHOX2a(2)                      <---------ARR14(2)       ------->TEIL                           ----------->GT1                    --------->LBD16           ----------->HVH21                          <------ZmHOX2a(2)                  <---------ANAC46 --------->At4g35610<---                         <---------ARR14(2)        --------->YAB1 --------->ARR11(3)  --------->LBD16                      ------>ZmHOX2a(2)<---------GLK1(2)    <-----------RAV1(2)<---------ARR11(3)----                     <------ZmHOX2a(2)<---------ZAT2       <-------TEIL       --------->ZAT2---------       --------->MYB52(1)--------->ARR14(2)      --------->GLK1(2)<---------ARR11(3)<---------LBD16 -------->GT1       --------->ARR14(2)--------->ZAT2      <---------ARR14(2)  <---------At4g35610---- ---ZmHOX2a(1)      <---------ARR14(2)--------->At4g35610 <-----------HVH21   <---------ZAT2=========   gagaaaaaaaaacagaagaccagatcggatcgaaaataccagcttcggaagaatcatgcggttcaggggatctcttagccagctcttccggtgaacctgc  1253500 ------>LBD16                                       ------>MYB83 --->NtERF2 <---------ZAT18             --------->ANAC58 >MYB83   --------->At4g35610           --------->ANAC58 >MYB46(1)<---------At4g35610           --------->ANAC46 ------ANAC46  --------->ANAC46       --------->MYB52(1)   --------->ICU4 ------->RAV1(1)         <---------At4g35610        ------>MYB46(1)                    --------->ANAC58 -->RAV1(2) --------->ZAT14         --------->CCA1(2)<---------ATHB12             --------->YAB1 ----->RAP2.6(2)         --------->At4g35610     --------->MYB46(3)    <---------ATHB12--------->ANAC58 ========RAV<---------ZAT14----------->RAV1(1) <-----------GT1<---------YAB1----------->GT1   cgcatatgactcagtagactccattgctgctacagaagataaacggcattaaccaatcgacattatcaattcaatgaagagaaataagaacgaaatcgga  1253600                                                                                       --------->At4g35610                                                                                   --------->ARR14(2)                                                                                   <---------ARR11(1)                                                                                   <---------ARR14(2)                                                                                   <-----------ARR10                                                                                   --------->GLK1(2)                                                                         --------->ANAC58                                            <----------ID1               --------->ANAC46           --------->CCA1(2)                ----------->GT1              --------->ANAC58           <         --------->CCA1(2)                 ----------->GT1            <---------REM1(2)<---------At4g35610    <------ZmHOX2a(1)       <---------GLK1(1)                <-----------GT1       ------->TEIL   <--   gagagaggaagagataagactcgttcatcgaaatctgagattgagaaggaaaaattccaaagtttacctgtcttcacacaattcgaatctgctccctccg  1253700                 --------->ATERF1(2)                 <---------ATERF1(2)                 <---------DEAR3(1)                 --------->DEAR3(1)               <---------ATERF1(1)               <---------RAP2.3(1)               <---------RRTF1(1)               <---------ERF1               ------>NtERF2              <---------DEAR3(1)              <---------RAP2.3(2)              <---------RRTF1(3)              <---------RRTF1(2)                                              <----------DOF2         --------->TGA1a                                                   <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         --------->O2<---------MYB46(3)                             <---------ANAC58            -----         =====================MYC_MYB                               <---------ANAC58           ------         <---------O2--------->MYB55(2)                            <---------MYB46(3)         <------NtERF2         <---------TGA1a       ------->TEIL                        --------->HSFC1(2)         -------     <-----------TGA1----------->GT1                               --------->ABI4(2)         ------>NtERF2     <-----------HVH21<-------GAMYB                          --------->ARR14(2)        <----------DOF2   <------NtERF2<------NtERF2  --------->GLK1(2)             <---------ARR14(2)  -------------------- <---------DEAR3(1)<---------MYB52(1)                      <---------SPL7------>ZmHOX2a(1)<---------- ------NtERF2 <---------RAP2.3(3)                      --------->YAB1    <---------LBD16 <-----------RAV1(1) -------DEAR3(1)--------->ATERF1(1)                   <---------ATHB12  --------------------->WRI1  <   tcgtcgtcgtcacttggcgccggtggttaaatgaatctgagcaaaactaagtctcaatcgtcgtatcggtgcttcctcggcttcttcgtctttgtcgccg  1253800                                                                                                   <-                                                                                                 ----                                                                                                 ----                                                                                                 <---                                                                                                 <---                                                                                            ---------                                                                                            <--------                                                                                           --------->AHL20(1)                                                                             <---------AHL20(2) ----- ->NtERF2<---------ANAC46                                                   <---------AHL20(2)  <---- --->DEAR3(1)                                                           <---------YAB1     <---------AHL20(2) -->ATERF1(1)                                                          <---------AHL20(2)  --------->AHL20(2) ->WRI1--------->ZAT14             ------>ZmHOX2a(1)                 <---------YAB1   ------>ZmHOX2a(1) -HVH21<---------ZAT14 <------NtERF2                              *TSS <---------AHL20(1)  <---------AHL20(1) ---------MYB46(3)   --------->ALFIN1    <---------CCA1(2)   <---------MYB52(1)      --------->TOE2(3)   agcggtttgtgaagtgaatgaaggtggctctggtgtccttcgtctatctatccactagcctcccttattctattattttttatttttcctaaatttaatt  1253900    -------->ZAP1   <---------At5g28300  <-----------GT1                       <----------DOF2  <---------WRKY18(1)                 ------>ZmHOX2a(1) -----------CBF                    ---------->ID1 ----->AHL20(2)                    <-----------GT1       <----------DOF2 ----->AHL20(1)              <---------AHL20(2)    --------->At4g35610 ------AHL20(2)             <---------AHL20(2)     <---------At4g35610 ------YAB1                 --------->AHL20(2)   --------->YAB1 >AHL20(2)                  <---------AHL20(1)  <---------ATHB12     --------->AHL20(2) -AHL20(2)              <---------AHL20(2)  ------------>CBF <---------AHL20(2)     --------->ANAC46 ---->AHL20(2)          --------->AHL20(2) --------->YAB1<---------DAG2            --------->At4g35610 -----AHL20(2)     <----------DOF2<-----------GT1<---------ICU4  ----------->GT1<---------ATHB12   ttattgaccgcctctctatttcttttttaatttttttttcctctttcacaatcatctcactttttatttgttaaaatatcaaatcaactcaactacaaaa  1254000                                 <---------ICU4                                --------->ICU4                                <---------YAB1                              --------->YAB1                --------->YAB1                    --------->ANAC46                       <---------YAB1      --------->ANAC58    --                    --------->ANAC58            <----------ID1                 --------->ANAC58   <--                    --------->ANAC58--------->YAB1        <-----------GT1    ---------->DOF2    -----               <---------------AtSPL8----------->GT1     --------->YAB1   --------->YAB1       <-----      --------->TOE2(3)   --------->AHL20(2)--------->AHL20(2)      <-----------GT1         ------->TEIL   tgtgttaacatcaaaatgtgctacgaaataaaacataattagaaaataaaacaccaaaattatcatttttctacaattttaaagcaatagaatgaacatg  1254100           <---------AHL20(2)     --------->AHL20(2)     <---------AHL20(1)     --------->AHL20(1)     <---------AHL20(2)                                                                         <----  --------->YAB1                                                                         --------->YAB1 <---------YAB1                                                                         <---------YAB1 --------->ICU4                                                                    <---------AHL20(2) ------->YAB1   ----------->GT1                                 <---------AHL20(2)<---------AHL20(2) -------YAB1 <---------ICU4                                     --------->AHL20(2)--------->AHL20(2) ---->YAB1--------->YAB1                      <---------------AGL15              <---------WOX13(1) ----YAB1--------->AHL20(2)  <----------DOF2  --------------->AGL15       <---------MYB46(3) --------   ataataataaaataaaaatggcaatatgtgtctttttctctctattttctcattttagaatttgattttattgcattggtttgatttattttcatagttt  1254200               --------->At5g28300    ------>ZmHOX2a(2)   <------ZmHOX2a(2)                                                       --------->YAB1  --------->ARR11(3)                             --------->WRKY12   <---------------AGL15  <---------ARR11(3)                             ----------->HVH21  --------------->AGL15  --------->ARR14(2)                          <---------ZAT6       <---------YAB1  <---------AGP1                       --------->SPL7             <-------TEIL  --------->AGP1                      <<<<<<<<<SPL1              --------->ARR14(1)  <---------ARR14(2)                  <<<<<<<<<SPL5              --------->CCA1(2)         --------->ATHB12 <---------CCA1(2)                 <---------------AtSPL3       --------->ARR11(1)        <---------YAB1 -----MYB46(3)----------->GT1     <------------------SPL14      --------->ARR14(2) ------->TEIL ---->MYB.PH3(2)    --------->AHL20(2)<<<<<<<<<SPL4             <---------ARR14(2)<---------AtLEC2   gttagatcttgaattgcagtaaatatatgtttatcaaattgtacggtagagttgacgaagacgatagatacgattaatggtaatgcatgtttatgatttg  1254300                                                                 <------------ATHB5                                                                 <---------ICU4                                     ----------->GT1             --------->ATHB51                                    <---------TOE2(3)            <--------ATHB1                                    --------->DAG2               --------->YAB1                                 <---------AHL20(2)             <---------ATHB12                                --------->YAB1                  --------->ICU4                            <---------AHL20(2)                  <---------ATHB51              <---------TOE2(3)<---------YAB1               <------NtERF2                      <-----             <---------ICU4 <---------YAB1                 --------->LBD16                  ---------          --------->YAB1   --------->YAB1                 --------->ANAC58                 --------->AHL20(2)         <---------AHL20(2)--------->AHL20(2)             --------->ANAC58      <----------DOF2<-----        --------->AHL20(2) <---------AHL20(1)            <---------LBD16  --------->ALFIN1 <---------AHL20(2)   aatcggtcgatttaataatgtaagttcaatattattataaggtgattttggttttttagcccggcaataatgggaagtggctctttagccaaaataaata  1254400  Previous    Next  AGI:  At5g04430.1    Description:  KH domain-containing protein NOVA, putative. similar to KH domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G10070.1); similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G33680.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68859.1); contains InterPro domain K Homology; (InterPro:IPR004087); contains InterPro domain K Homology, type 1; (InterPro:IPR004088) Range:  from: 1250252    to: 1253866    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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