Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                      --------->At4g35610                    <---------At4g35610       --------->ANAC46                ---------->ID1    <---------YAB1         <---------ZAT14     <       <---------ANAC55(2)         <----------DOF2       <---------AHL20(2)     --------->ZAT14     -       --------->ANAC55(1)  <------ZmHOX2a(2)        <----------DOF2<---------AHL20(2)              <       --------->ANAC55(2) --------->ARR11(3)   <----------DOF2    <---------AHL20(2)       --------- ---YAB1  ------->TEIL     <---------ARR11(3)<-----------GT1       --------->AHL20(2)<---------GLK1(1)   gtgaagttcacgtatgtgtgtctgatgaagatcatttctttgttttttttcttttctttataatttgaataaaattggtcactgtagaaatctgactcta  1220400                                                                                          --------->AHL20(2)                                                                                       -------->HAHB4                                                                                       --------->ATHB12                              --------->ALFIN1                                         <---------ICU4                             <------NtERF2                                             <--------ATHB1                             <-------GAMYB                                             --------->ATHB51                            <---------DEAR3(2)                                        --------->ICU4                            <---------MYB46(3)             <---------ICU4             <---------YAB1                           <---------DEAR3(1)       --------->SPL7                  --------->YAB1                           <---------DREB2C(2)    --------->LBD16                   <---------ICU4    <---------ANAC58      <------NtERF2          <---------ANAC55(2)               <---------YAB1    <---------ANAC58      <---------ABI4(1)      --------->ANAC55(2)               --------->ICU4 ---------ANAC58        <---------DEAR3(1)      --------------->AtSPL3           --------->YAB1 -------->ALFIN1        ---------->CDC5   <-----------GT1 --------->ICU4   --------->ANAC58 ---------ANAC58     ------->GAMYB<---------At4g35610     <---------YAB1   --------->ANAC58 >ZAT6       --------->ALFIN1--------->ATERF1(1)--------------->AtSPL8 --------->YAB1 <---------ATHB51   atgtgtgcgtaagaagtgtgtaacgctcggcggtggagcttatgttacaatccgtacttcattattctgtctgtgataagaaataataataattgaatat  1220500                                                               <---------ARR11(3)                                                      --------->ANAC58                         ------                                                      --------->ANAC58            --------->AHL20(2)                                                <---------------AGL15             <---------AHL20(2)                      <---------YAB1  ------------>CBF--------->ANAC46       ------------>CBF  <-----               ---------->DOF2       <-----------GT1--------->MYB52(1)      <-----------GT1 <--------           --------->AtLEC2    ------------>CBF<-----------------AGL3 ------------>CBF      ---------   gtagcctagttttatgcaaaagttttgaatgttttcaatttacaatccaactaaaaacggaacaacatctcaaacaatttacaataaaatcaaagattta  1220600                                                                                                 <---                                                                                                <----                     <---------AHL20(2)                                                        ------                --------->ANAC55(2)                                                           <------                <---------ANAC58                                                           <---------AHL20(1)                <---------ANAC55(2)                                                        --------->AHL20(1)                <---------ANAC55(1)     --------->TOE1(2)                                  <---------AHL20(2)  <----------DOF2   --------->AHL20(2)  --------->TOE2(2)                                  --------->AHL20(2) --->AHL20(2)   <---------ANAC58      >>>>>>>>>MYB98   <----------DOF2                  --------->AHL20(2) ----AHL20(2)   <---------ANAC46  ----------->GT1      <---------DAG2        <---------------AGL15 -ARR11(3) --------->At4g35610   --------->DAG2       <---------DAG2         --------------->AGL15--- >ARR11(3) <---------At4g35610  ---------->DOF2    <-----------GT1  <---------ALFIN1----------->GT1   tattctttatctcagattacgttttaatttcataaaaagtaacataagaaattatacctttttggattcaacactgtttcattttttggttaaaatatta  1220700      <---------ARR14(2)                                                          --------->YAB1      --------->ARR14(2)                                                      --------->AHL20(2)     <---------CCA1(2)                                                        <---------AHL20(2) ------YAB1                     ---------->DOF2                       ----------->GT1 -------GT1          <---------ANAC58                             --------->AHL20(1) --->YAB1            <---------ANAC58                             <---------AHL20(2)  ------------>CBF ---YAB1          <-----------GT1          --------->TOE2(3)      --------->AHL20(2) <-----------GT1 ------>YAB1------------>CBF--------->At4g35610           <---------AtLEC2    ----------->TBP   tcatcccatatcgtctcaattttccttgttagcacaaagaaataacatcaaaacctattttcatgaaataaaatgtgaatataaatataacaatagatta  1220800                                                                                     <----------DOF2                                                                                    <---------ANAC58                                                                          <---------SPL7                                                             <---------ANAC58       <---------ANAC58                                                             <---------ANAC46--------->ANAC58                                                             <---------ANAC58--------->ANAC58      <-             <---------AHL20(2)                        --------->ATHB12  <---------ANAC58       -----             --------->AHL20(2)                       <---------YAB1     <---------ANAC58  --------->ANAC46       --------->LBD16        ------------>CBF      <---------MYB46(3)   <---------ANAC46<-----------GT1   agtctattccccaaatttatcacgagaaaatgaacaatctcttcatattttcgattgttattggcttatgcattggcgtaagcaatgcttttcacgagat  1220900                                                                                           <---------ARR14(2)                        <---------ATHB12                                       ------>ZmHOX2a(2)            <---------ANAC58                                                  <------ZmHOX2a(2)            <---------ANAC46                                                 <---------ARR11(3)            <---------ANAC58                                                 --------->ARR11(3)       ---------->DOF2 --------->ANAC58                      <---------ANAC58--------->ARR14(3)    --------->ANAC58   --------->ANAC58               <-------TEIL           <---------ARR14(3)    --------->ANAC58  --------->WOX13(1)         ---------->DOF2             <---------ARR14(2)  ---------->DOF2  --------->ANAC58            ------>ZmHOX2a(1)   ---------->DOF2<---------LBD16 -----ZmHOX2a(1)   --------->ANAC58   --------->At4g35610    <---------ANAC58--------->ARR14(2) ---->CCA1(2) <---------ZAT6          <---------At4g35610   <-----------------------TaNAC69(2)   aggagaaagcaaagtcgtgttaagcaatcaattggaacacagcaaactcctcaaagttcattgtcgttccaaagacgacgatcttggggagcatattttg  1221000                                                                                          --------->YAB1                                                                                ------>ZmHOX2a(1)   <                       <---------DAG2                                  <------ZmHOX2a(2)  <---------ICU4                   <---------ZAT14                           <-----------HVH21 <---------MYB59      <         --------->ZAT6<----------DOF2      --------->MYB52(1)         ================HOX2a_HOX2a  -   aaaattggccaagactacgagtttacttttggtgataacatttggcaaacgactagtttctcatgtcaaatggatcagggtcctaattttaagcatcacc  1221100                                                          --------->MYB59                                             <---------ANAC58                                             <---------ANAC46                                             <---------ANAC58         <---------ANAC46                <---------HSFC1(2)<------MYB46(1)                          -    <-----------RAV1(1)          <---------ARR11(3)     --------->ARR14(2)                      ----- ---------ARR11(3)               --------->ARR11(3)   <XXXXXXXXXXXXXXXXXXXXMIR3440B-5P          <---- ---------GLK1(2)            ---------->DOF2<-------TEIL<---------ARR14(2)                     ------ -------->ARR11(3)   <---------ANAC46    --------->HSFC1(2)<------MYB83                        <-----   tagattttgtggcatatgagacttcgtggagcaaagctcttgaagcttcgtgtaagtggataggtagagaagatggaatctatttttctcaagatggagt  1221200                                                                                                  ===                                                                                                  ---                                                                                                 <---                                        --------->DAG2       --------->ATHB12                    ----          --------->DAG2               ---------->DOF2      <---------YAB1                      <----         ---------->DOF2            --------->AtMYB61       ------>ZmHOX2a(1)                <-------      --------->AtMYB61         --------->MYB46(3)        ------>ZmHOX2a(2)                  <-------  <---------MYB55(2)            <---------MYB55(2)      <---------ARR11(3)                  <-------GAMYB  --------->MYB46(3)          ------>ZmHOX2a(1)         --------->ARR14(2)                 <---------MYB46(3) ----->ZmHOX2a(1)             ===================================HOX2a_HOX2a            <----------DOF2 ---->ARR14(2)            --------->ARR14(2)            <---------ARR14(2)            <---------YAB1 -----ARR14(2)            <---------ARR14(2)            --------->ARR11(3)           --------->ARR11(3) --->GLK1(1)             --------->GLK1(1)            ----------->ARR10              <---------ARR11(3) ----GLK1(1)             <---------GLK1(1)  <<<<<<<<<<<<<<<<<LFY --------->YAB1    <---------AHL20(2)   tcctcccaccaaaaagtaccaagatggagttcctcccaccaaaaagtaccaatgggatgatcctcattgaaaattagagttttatattatctttggttga  1221300  Previous    Next  AGI:  At5g04347.1    Description:  similar to self-incompatibility protein-related [Arabidopsis thaliana] (TAIR:AT5G04350.1); similar to self-incompatibility [Papaver nudicaule] (GB:CAA06689.1); contains InterPro domain Plant self-incompatibility S1 (InterPro:IPR010264) Range:  from: 1219829    to: 1220613    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g04350.1    Description:  self-incompatibility protein-related. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G04347.1); similar to self-incompatibility [Papaver nudicaule] (GB:CAA06689.1); contains InterPro domain Plant self-incompatibility S1 (InterPro:IPR010264) Range:  from: 1220830    to: 1221270    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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