Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 <-----                                                                                               ------                                                                                         --------->AHL20(1)                                                                                         --------->AHL20(2)             --------->GLK1(2)                                                           <---------AHL20(2)            <---------GLK1(2)                                                         --------->YAB1            --------->ARR14(2)                                                       <---------YAB1            <---------ARR14(2)                      --------->YAB1                  --------->AHL20(2)           <---------At4g35610                      <---------ICU4             --------->AHL20(2) <---------CCA1(1)                              <---------YAB1                 <---------AHL20(1) <---------RVE1(1)                              --------->AHL20(2)             <---------AHL20(2) ---------GLK1(2)                               <---------AHL20(2)  ----------->RAV1(1)  <---------AHL20(1) -------->ARR11(3)                   <---------YAB1--------->ICU4--------->ANAC46   <---------AHL20(2) ---------ARR11(3)                  --------->TOE2(3)  <-----------GT1        --------->AHL20(2)    -   aagattttttgtcagattctactaggccaagttggcattgttaatgagttttaattatcacggttttaggcaacataatattaaattttaataaattatg  1208800                                            <---------ANAC58                                            <---------ANAC46                                            <---------ANAC58             <---------YAB1                 <---------TGA1a           --------->YAB1                   --------->O2          --------->AHL20(2)                <---------O2          <---------AHL20(2)                --------->TGA1a    <-----------GT1                      --------->WRKY12 <---------ICU4    <---------YAB1        ----------->HVH21                       --------->TOE2(3) ----------->GT1 --------->YAB1        <----------DOF2             <---------At4g35610              - ----ANAC55(2)   <---------ICU4        ===============bZIP_DOF     <---------ZAT2--------->TOE1(3)  - --->ANAC55(2)  <---------YAB1      <---------ARR11(3)             --------->At4g35610      <-------- -------->ICU4--------->YAB1        --------->ARR11(3)--------->REM1(1)          <---------MYB59    -   taatagttacaatttataatcatagttgtttagaagaatacctttgacgtgaaactacaactacatgtgagcagagctataaacctaaatgtttctgatt  1208900             <---------ARR11(3)                                                   <---------ZAT18             --------->ARR11(3)                                               <---------ICU4  <---------MYB59                                                             --------->ATHB51  ------->GAMYB                                                               --------->ATHB12 ----->MYB46(1)      ------>ZmHOX2a(2)      <---------TOE2(3)                <---------YAB1 ------->P <---------TOE2(3)       ------->GAMYB                             --------->ICU4 -YAB1     <---------TOE1(3)       <---------MYB59                        --------->ICU4 ----->MYB83 <---------GLK1(2) --------->MYB46(3)       --------->LBD16 ----------->GT1    ----------   ccaaccgaattttaagattttgatccaaaaactacaaccgaattttaagtttttcatccgaaaactgattacagtagttattattgcacatagccacatt  1209000                                                                                                    -                                                                                                    -                    <----------DOF2                                                            <-----                 <-----------GT1                                                               <-----                <-----------GT1                                                          <---------AHL20(1)          <---------TOE1(3)                ---------->DOF2              <---------ICU4   <---------AHL20(2)      <---------TOE2(3)         <---------AHL20(2)                     --------->ICU4    --------->AHL20(1)    <---------AHL20(2)         <---------AHL20(2)                    ================================   <---------AHL20(2)   <-----------GT1 <XXXXXXXXXXXXXXXXXXXXMIR413  <---------------AGL15<---------AHL20(2) ->RAV1(1)<---------TOE2(3)    --------->AHL20(2)          <-----------GT1<---------YAB1 --------->AHL20(2)   tgttttttaatgaaggttttaacttttaactatttaaattgcagaaaaagagaaattgtttttacaaatgcccattatgagttatgaccaatttatttcg  1209100            --------->ZAT2      ---------->DOF2                                                 ---------->DOF2     --------->AHL20(2)                                            <-----------TBP ---------------->AGL3                                         --------->LBD16             --------->At4g35610 ----------->CBF ---------->DOF2                             <---------LBD16               ---------- ----ANAC58 <---------At4g35610                          ----------->HVH21               <-----------RAV1(2) ----ANAC58 --------->At4g35610             <-----------GT1 ------->TEIL    --------->At4g35610    *TSS =================MADS_MADS         <------------CBF --------->At4g35610 <---------At4g35610       <-   agcccaattaaagcagctcaaaagcccaactagaaggaaattgaattttctaatcagatgtgaaccgggttttaaagctgatgaaaccagaccaggtgaa  1209200                                          ------->TEIL                                          <---------ARR11(1)                                          <-----------ARR10                                          <---------ARR11(3)                                          --------->ARR14(2)                                         <---------CCA1(2)                                       ------->GAMYB                                     -------->P                                     ------>MYB46(1)                                <---------ARR14(2)                              --------->DEAR3(1)                             <------NtERF2<---------ARR14(2)                            --------->LBD16                            <---------At4g35610                            ------>NtERF2<---------ARR14(1)                           --------->ATERF1(2)                                        <---------At4g35610                           <---------ATERF1(2)                                        --------->At4g35610                           --------->DEAR3(1)    <---------ANAC58              --------->ALFIN1                 <---------ANAC58    ------>MYB83<---------ANAC58      <---------ARR14(2)   ----------->GT1        <---------RAP2.6(2)<----------DOF2           --------->ARR14(2) ->GT1         <<<<<<<<<<WRKY63 --------->ARR14(2)                     --------->GLK1(2) --------AHL20(2)<---------ANAC58<------ZmHOX2a(2)                     <-----------ARR10   --------->At4g35610   tttttttgtaaatttgttgacttggtttgccgccgatccaaccgtatctttccgtcttcttcgatagagtgagaatctagggtttgggagatgagcagtc  1209300                 ----------->RAV1(1)               <---------ZAT2               --------->ZAT2             --------->ANAC46            --------->LBD16          ------>ZmHOX2a(2)         <------ZmHOX2a(2)        --------->ARR14(2)        <---------ARR14(2)                                                                   --------      <---------MYB46(3)                                                                   ----------    <---------MYB52(1)                                                              <---------AtLEC2   <-------GAMYB<---------ALFIN1                                                    <---------ANAC58  <---------ANAC58                 <---------AHL20(2)               --------->ATHB12<---------ANAC58  <---------ANAC46 <---------ALFIN1--------->AHL20(2)          --------->ATHB12     <---------ANAC46  <---------ANAC58 --------->AtMYB61---------->DOF2     ---------->DOF2      ----------->ARR10   gattccgttggatccccagcaccacatctgtatgaaattaaaggctgtgagtctatctgaaagcttgatttcattggcttcgatttgcttgaagagataa  1209400                    --------->At5g28300                   ----------->GT1                  <---------DEAR3(1)               <---------O2               <---------bZIP60(1)               --------->bZIP60(1)            ----------->TGA1            ----------->HVH21          <---------At4g35610          --------->LBD16                                      --------->GLK1(2)                 <---        <---------LBD16                                      <---------HSFB2a(1)      <---------GLK1(2)      --------->GLK1(2)                                      --------->HSFB2a(1)    <---------YAB1      --------->ARR14(2)                                <---------YAB1         <---------------AtSPL8     <---------GLK1(2)                            --------->LBD16              <---------------AtSPL3 ->ARR11(3)<-----------HVH21                    <-----------------AGL1     <------ZmHOX2a(1)     <--- ->GT1<---------ARR14(2) <-------TEIL           ----------------->AGL1 --------->TOE1(2)         <---   tcgaagagattccggtgacgacggtgatacattgttgacttccattttcttccgaattttgaaaggttctgaagctaggagagagtacgattctcactat  1209500           ----------->GT1         <--------P      <---------ZAT6  <---------ZAT14                            --------->HSFB2a(2)    <---------ANAC58 ------ANAC58                          <---------------AGL15        <---------ANAC58 ------ANAC58      --------->ATHB12    <----------DOF2     <---------YAB1 <-------TEIL           ---- ------ANAC46     <---------AHL20(2)  <-----------------AGL3   --------->ALFIN1     --------->LBD16   cgtgtttactggtaagttaattcattgtccaaattgtttagcttttactggaatcgaaagtatgagtgaggcttgattcatgtttccccaatttcagagt  1209600               <---------At4g35610                                                              -----            <------MYB83                                                                        <----           <---------AtMYB61                                      ----------->GT1               <----           --------->ALFIN1                                      --------->DAG2              --------         <------ZmHOX2a(1)                                     ---------->DOF2              ------>MYB83     ---------->DOF2                                        ----------------->AGL1          ------>MYB46(1)    --------->YAB1--------->MYB52(1)  <---------ZAT14      ----------------->AGL1        --------->MYB46(3)   <---------ATHB12               <---------WRKY18(1) --------->MYB59                   ------->TEIL --------->WOX13(1)              --------->WRKY38(1)  <---------TOE2(3)       <-------TEIL ---------- ----->ZAT18<------MYB46(1)  ------->TEIL             <---------TOE1(3)     --------->YAB1 ==========   ccccaatcaaaggatggtgctaactgaaatgagccttgactactctaatagggttttaggttcccaaaaggtgaacaatattcatacatgaaccaacaaa  1209700  Previous    Next  AGI:  At5g04320.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G10440.1); similar to hypothetical protein OsI_009118 [Oryza sativa (indica cultivar-group)] (GB:EAY87885.1); contains InterPro domain Shugoshin, C-terminal; (InterPro:IPR011515) Range:  from: 1209199    to: 1212579    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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