Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            --------->YAB1                                      <---------WRKY38(1)                                   --------->WOX13(1)                                 <---------MYB52(1)                                <-----------TGA1         --------->ANAC55(1)      --------->TOE2(3)                                <-----------HVH21        --------->ANAC46        --------->YAB1                              <-------TEIL--------->TOE2(3)                   --------->YAB1                           --------->At4g35610     --------->AtLEC2 <----------DOF2<---------YAB1                           <---------At4g35610<-----------GT1      <---------DAG2<---------ICU4 -----                     <----------DOF2 --------->WRKY18(1) --------->YAB1      <-------TEIL    --------   gtttgttttggaccataacatgacttttgagcttcgtcagtcaatgttaaaccttgcacacataactagcctttttagtttcatcatcaatgtacaagag  1195700                                                   --------->ZAT14                                                <---------ANAC46                                       --------->AHL20(2)                 ----------->GT1     <---------ANAC46   <---------YAB1 <---------AHL20(2)               <------------CBF        ----- ---->CCA1(2)   --------->LBD16       <---------WOX13(1)          <---------ANAC58      <---------MYB52(1) ->ANAC46     <---------LBD16      <---------YAB1  <---------ZAT14<---------ANAC58  <-----------GT1   acgagtgtcttaggcatccgcatgttattctaaaattttgatttattgttttgtatactgtacatattgcttcatattgtcaaaattttcgttttttcct  1195800                  --------->ARR14(2)                 ------>MYB83                                                            ---------->DOF2                 ------>MYB46(1)                                                         --------->YAB1               --------------->AGL15                                                ------------>CBF               <---------------AGL15                                            <---------AHL20(2)               <---------MYB59                       <----------ID1         <---------AHL20(2)              ----------------->AG             <---------YAB1               --------->AHL20(1)              ----------------->AGL1          <------------CBF              --------->AHL20(2)             <-----------------AG           <---------YAB1      --------->DAG2  --------->YAB1   ------------>CBF                         <---------AHL20(2) ---------->DOF2  --------->AHL20(2) ->ZmHOX2a(1)<-----------------AGL1 --------->At4g35610   ---------->DOF2  --------->AHL20(2)   ataagttcaatctattaccaaataggcaaataaaacgaagcagaatattattgtagagacaaaagaaaagttgagaaattaattaaaacaataaagagtc  1195900                ---------->DOF2              --------->AHL20(2)              --------->YAB1                              ---------->DOF2              <---------AHL20(2)     ----------->GT1  --------->ANAC58           --------->YAB1        <---------ZAT14      --------->ANAC58           ----------->GT1       ---------->DOF2 --------->ANAC46                   <-----------GT1       ----------->GT1        ----------->GT1    --------->ANAC58         --------->YAB1    <------------CBF      ---------->DOF2        --------->ANAC58      --------->WOX13(1)     -------   --------->ATHB12    <---------------AGL15   ---------->DOF2       ------------>CBF<---------TOE2(3)   caaatcgattggataataaaaaggccttaaaagagtaaagagtaaaaaaaaaagccactcaaaagtcggaaaacaatcacatctataaacgttttcttca  1196000                                                                                                  <--                                                                                                 <---                                                                                                 <---                                                        --------->REM1(2)           ----------->GT1 <                                                   -------->P                      ----------->GT1---                    ---------->DOF2  ---------->DOF2 ------->GAMYB              ---------->DOF2  <---             ---------->ARF1       <---------YAB1  <---------At5g28300  ------>ZmHOX2a(2)      <-----     <---------At4g35610    ------------>CBF      --------->MYB52(1)    --------->ANAC58       ------ -->ZAT14    <---------CCA1(2) <------------CBF <---------MYB52(2)      --------->ANAC58     <-------   ctctctctgctacttgtctctcaaaagaaatgcaattgtgaaagccctaaactaaccgtgaagaagacgatggatcgcaagggaaagggtaaacaggtcg  1196100                             ----------->GT1                           ---------->DOF2                     <------NtERF2     --------->ATHB12------>NtERF2    --------->ICU4  <---------SPL7 -------ATERF1(2)   ----------->HVH21 ------ANAC46    ------>NtERF2 ------LBD16    <---------RAP2.6(2) ---------MYB52(1) <---------ANAC46 ------>ATERF1(2)--------->LBD16                                   <------ZmHOX2a(1) ---NtERF2      <---------RAP2.3(2)                              <---------TOE2(3)            <------ ----DEAR3(1)   <---------LBD16          --------->LBD16  <---------TOE1(3)                  <------- --->ETT(2)    <---------LBD16<----------ID1              <---------TOE2(3)           ----------->RAV1(2) ----HVH21  <---------ARR14(2)----------->GT1          <---------REM1(1)     ----------->GT1 --------   ccggtagtgattcgtattccggcggacagaaaaggaaaaactccgtcgaattcagagatgaaggtttgaggattaagaagcgcaaaaaccctgaggttct  1196200                                                                                         <---------ICU4                                                                                         <--------HAHB4                                              ------>NtERF2                              --------->YAB1                                             --------->DEAR3(1)                         <---------YAB1                                             ----------->HVH21                  --------->At5g28300                                          <---------ARR14(2)                   ------->GAMYB                                          --------->ARR14(2)                --------->MYB52(1)                                         --------->At4g35610              ------>ZmHOX2a(1)                                         <---------ZAT2                  --------->TOE1(3)                                         <------NtERF2                  ----------------->AG                <---------At4g35610      --------->ATERF1(1)            ----------------->AGL1                <---------ZAT2           --------->ZAT2                <-----------------AGL1--------                --------->At4g35610      <---------At4g35610       <------MYB46(1)     <-----------GT1                ----------->RAV1(2)     <---------ATERF1(1)        <------MYB83----------->GT1 --------->ARR14(2)                   --------->ATERF1(1)         --------->MYB59    --------->AHL20(2) -TEIL          --------->ZAT2        <------NtERF2               <---------TOE2(3)  <---------AHL20(2) --ARR14(2)   <-----------RAV1(2)    <---------ATERF1(1)    <---------ANAC46<---------DOF5.7(2)     < ->ARR14(2) --------->GLK1(2)   <---------LBD16          ----------->TGA1--------->TOE2(3)   <-------   tcagttcttcgaagaatcagctgaagttggctactacggaggcagctccgacgaagatgatgacggattaggtttccttaacggtaatttatcattatct  1196300         <---------MYB52(1)        <-------GAMYB       <---------MYB46(3)             <---------ANAC58       --------->MYB52(2)<---------ANAC58                                                          <-      <-------TEIL       <---------AtLEC2                                                         <-- ->ARR11(3)              <---------ANAC58  <---------MYB52(1)                                 <------ ---------LBD16      <----------DOF2  <---------ANAC58                                       -------- --ARR11(3)    <-----------GT1   --------->ATHB12 <----------DOF2                            <-------   tctctgggttcgttgattttcttctttgcatggtttcattgcttcgtttcttcttttgtgaggtctccgattgtgtctgtttttgtttctactgagattt  1196400                                                               <---------TOE1(3)                                                               <---------TOE2(3)                                                        <---------TOE2(3)                                                  ----------->HVH21          --------->ALFIN1                      <---------ANAC58      ---------->DOF2                           <---------ANAC55(2)                           <------ --------At5g28300                              <---------ANAC55(1)                           <------ ---------GT1                                   <---------ANAC46                           <---------ANAC58 ---RVE1(1)                     <-----------HVH21--------->LBD16                           <---------ANAC58 ->ARR11(3)            <-----------HVH21        --------->ANAC55(2)              <---------ANAC58 --ARR11(3)          --------->MYB59            <---------ANAC58                 <---------ANAC58 <--   ttaccatctaaagtggcgatttttaggtcatctctgtcgaatggctgattccgtgactagggtttagggtttgcattttgttttcgtttgatttcgagct  1196500                                                                        <---------ARR11(3)                                                                  <----------DOF2                                                                  <---------DAG2                                                               <---------ALFIN1                    <---------TOE1(3)                   --------->HSFB2a(1)                     -----            <-----------GT1                             <---------HSFC1(2)                     ------           <-----------GT1 --------->YAB1               --------->HSFC1(2)          <----------DOF2 ---ZAT2<---------ZAT6  <----------DOF2                 <---------HSFB2a(1) <-----------GT1    ------ ---At4g35610  <----------DOF2      ---------->DOF2   ---------->DOF2   --------->ARR11(3)     <----- -------MYB52(1)    <---------TOE2(3)         <---------ICU4 <---------ALFIN1 <---------YAB1   ------   gttttgtctagttttaacttttaaggctttcatactcttaaagcttgaacattgcagaaagttccacactttattatcttactattcttttgatgcagat  1196600  Previous    Next  AGI:  At5g04280.1    Description:  glycine-rich RNA-binding protein. similar to glycine-rich RNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G60650.1); similar to glycine-rich RNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G60650.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO68882.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain RNA recognition motif, glycine rich protein (InterPro:IPR015465); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 1192275    to: 1195663    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g04290.1    Description:  KOW domain-containing transcription factor family protein. similar to KOW domain-containing transcription factor family protein [Arabidopsis thaliana] (TAIR:AT4G08350.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68890.1); contains InterPro domain Transcription antitermination protein, NusG, archaea; (InterPro:IPR003257); contains InterPro domain KOW (InterPro:IPR005824) Range:  from: 1196070    to: 1202654    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version