Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          ------>ZmHOX2a(2)                       <------ZmHOX2a(2)                      <---------ARR14(2)                      --------->ARR11(3)                      --------->ARR14(3)                      --------->ARR14(2)          <------ZmHOX2a(2)         <---------ARR14(2)         --------->ARR14(2)        <---------RAP2.6(3) <---------ZAT2       <---------ARR14(3) --------->ZAT2       <---------ARR11(3) ----->MYB46(1)<---------ZAT18 ----->MYB83   <---------At4g35610                                    <---------AHL20(2)          <-- --------ZAT14 --------->At4g35610               <---------ANAC55(2) <---------WOX13(1)        <----- -------MYB59  --------->ZAT14         --------->YAB1    <------ZmHOX2a(1)                     ------ ---->HVH21------>ZmHOX2a(2)          <---------YAB1  --------->YAB1 <---------YAB1      ---------->DOF2   ccgaactggccgatctgtgctcacgatcttgttgttcttgatcatagcattacctataaggacctcatttgattaatggagagttggagactaaagaatg  1187900                                                                  ---------->DOF2                                                               <---------ARR11(3)      --------->AHL20(2)                                       --------->ARR11(3) <---------HSFB2a(2)                                         --------->ICU4 <---------HSFC1(1)                                     --------->ANAC58 --------->HSFC1(1)                                     --------->ANAC58                        <---- --------->HSFB2a(2)          --------->TOE2(3)     --------->ANAC58                        --------- -------YAB1--------------->AtSPL3                  --------->ANAC46                       --------->ATHB12 ----YAB1   <---------------AtSPL8                  --------->ANAC58                      <-------TEIL --->ICU4   --------------->AtSPL8                --------->ZAT6<------ZmHOX2a(2) <-----------GT1  <-   attctagaaaaaatacagtacatactacataacattatacatctgttcatcaacactcaagtcaagatcaaaggcaaaatagtttttccatattcattgt  1188000                                           <---------AHL20(1)               <---------MYB52(1)          --------->ARR11(3)              <-----------HVH21            --------->AHL20(1)    ------->GAMYB                         <---------AHL20(2) --------->MYB52(1)                     --------->AHL20(2) ---------->DOF2    <---------WRKY18(1)<---------AHL20(1) <-----------GT1--------->ATHB12  --------->AHL20(2) -----YAB1   --------->ANAC46   <---------TOE2(3)                                             ------- ------------>WRI1 --------->WRKY12    --------->AHL20(1)                                    -------- --------MYB52(2)  --------->WRKY38(1)--------->AHL20(2)                            ----------->GT1 -   aattaacgccctaatccgtcattgaccctagattaagaaaatatatatattgagacatagatgatatatgtaaacatgttcaaacacagaaaaaaaaaag  1188100                                                         <---------ARR14(2)                                                         --------->ARR14(3)                                                         <---------ARR14(3)                                        <------ZmHOX2a(2)--------->ARR11(3)                      <---                                    <------ZmHOX2a(2)    <---------ARR11(3)         --------->ANAC55(2)  --------->TOE2(3)                --------->ARR11(3)    --------->ARR14(2)        --------->MYB59<-- -->DAG2                   <-----------GT1          <---------ATHB12               <---------TOE2(3) -->DOF2     <---------ATHB12      <---------ARR11(3)--------->YAB1             <----------DOF2 ----- -------->ICU4--------->YAB1   ---------->DOF2    --------->WOX13(1)  <----------DOF2          ------   tgattcttaaaactaatcaagagagagatttaccaaagatcgatccagacttcaatcaatatcttcaagtttctttctcaagctttaggtatttgtagcc  1188200                         --------->GLK1(2)                        <---------GLK1(2)                        <---------ARR11(3)                        <---------ARR14(2)                        --------->ARR14(2)                <xxxxxxxxxxxxxxxxsmallRNA(i)                xxxxxxxxxxxxxxxx>smallRNA(i)                <xxxxxxxxxxxxxxxxsmallRNA(s)                <xxxxxxxxxxxxxxxxsmallRNA(le3)                <xxxxxxxxxxxxxxxxsmallRNA(si3)                <xxxxxxxxxxxxxxxxsmallRNA(fl3)                <xxxxxxxxxxxxxxxxsmallRNA(se3)               <xxxxxxxxxxxxxxxxxsmallRNA(si3)               <xxxxxxxxxxxxxxxxxsmallRNA(fl3)              <xxxxxxxxxxxxxxxxxxsmallRNA(si3)              <xxxxxxxxxxxxxxxxsmallRNA(i)              <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)              <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)              <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)              <xxxxxxxxxxxxxxxxxsmallRNA(si3)              <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)             <xxxxxxxxxxxxxxxxxxsmallRNA(le3)             <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)             <xxxxxxxxxxxxxxxxxxsmallRNA(si3)             <XXXXXXXXXXXXXXXXXXXXMIR172C/D             <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                <------             <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                               <--------             <xxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                             <---------ZAT2            <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                             --------->ZAT2            <xxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                              <---------At4g35610            <xxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                             --------->At4g35610            <xxxxxxxxxxxxxxxxxsmallRNA(si3)                                           <-----------RAV1(1)            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                   <xxxxxxxxxxxxxxxxsmallRNA(i)            <XXXXXXXXXXXXXXXXXXXXMIR172A/B                                        <xxxxxxxxxxxxxxxxsmallRNA(s)            <xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                    --------->YAB1            <xxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                     <xxxxxxxxxxxxxxxxxsmallRNA(fl3)            <xxxxxxxxxxxxxxxsmallRNA(fl3)                                        <xxxxxxxxxxxxxxxxxsmallRNA(si3)            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                   --------->TOE2(3)  *TSS            <XXXXXXXXXXXXXXXXXXXXMIR172E                                        <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)            <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                  <xxxxxxxxxxxxxxxxxxsmallRNA(le3)            <xxxxxxxxxxxxxxxsmallRNA(le3)                                       <xxxxxxxxxxxxxxxxxxsmallRNA(se3)            <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                   <xxxxxxxxxxxxxxxxxxsmallRNA(si3)            <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                 <XXXXXXXXXXXXXXXXXXXMIR172B*            <xxxxxxxxxxxxxxxsmallRNA(si3)                                      ------->TEIL<---------DEAR3(1)            <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                  <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)            <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                 XXXXXXXXXXXXXXXXXXXX>MIR172A/B            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)            <xxxxxxxxxxxxxxxxsmallRNA(si3)                                     <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                XXXXXXXXXXXXXXXXXXXX>MIR172E            <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                 <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)            <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                  XXXXXXXXXXXXXXXXXXXX>MIR172C/D           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                <---------CCA1(2)------           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         <---------REM1(1)        <-------TEIL                                <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <---------MYB46(3) <---------YAB1                                          <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --------HVH21<xxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->TOE1(3)              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ----NtERF2<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->TOE2(3)              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ---->DEAR3(1)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               <-----------GT1<xxxxxxxxxxxxxxxxxxxxsmallRNA(i2) --->ATERF1(1)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <---------TOE2(3)     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   gtcgattgttgatgcagcatcatcaagattctcatatacatatcaaaaccctaatttagggtatttatcaatttccatgtgaatcttaatggtgctgcgc  1188300                                      --------->ORA47(1)                                      ------>NtERF2                                     --------->RRTF1(2)                                     --------->RRTF1(3)                                     --------->RAP2.3(2)                                     --------->At1g77200                                     --------->DREB2C(2)                                     --------->DEAR4(1)                                     --------->RAP2.6(2)                                     ----------->HVH21                                     --------->RAP2.3(3)                                     <---------ETT(1)                                     --------->DEAR3(1)                                    --------->ORA47(2)                                    --------->RAP2.3(1)                                   --------->LBD16                                   ------>NtERF2                                       --------------                                   <---------ATERF1(1)                                 <-------------                                 ------>ZmHOX2a(2)            --------->ANAC58        <------------CBF                 --------->At4g35610--------->ERF1            --------->ANAC46       -------->ATHB1            <---------At4g35610  --------->MYB46(3)           --------->ANAC58       --------->ATHB51        ------->GAMYB            --------->ATERF1(1)      --------->ANAC58           --------->YAB1       --------->MYB46(3)       <------ZmHOX2a(2)         --------->ANAC58          <---------YAB1     --------->MYB52(1)   <---------AtLEC2                --------->ANAC46     --------->ARR14(2)  --------->ANAC46 <----------DOF2 --------->At4g35610  <-----------GT1        --------->GLK1(2) ---ANAC46<-----------RAV1(2)  <---------ARR14(2)  <---------AHL20(2)          <---------ARR11(3) -ATERF1(1) --------->At4g35610------->TEIL  ----------->GT1 ------->TEIL      <---------ARR14(2)<--- >NtERF2----------->RAV1(1)    --------->ARR14(2) --------->AHL20(2)     <------ZmHOX2a(2)   --------   ctacaaacaacgacagatgagctttcttccatggatccgccgacaacttgtataaaatttacgcacgcacaagagatcgagtatctattattgtacaaca  1188400                                       <---------ANAC58                                       <---------ANAC58                                     <---------AHL20(2)                                        ------                                     --------->ARR11(3)                                       >>>>>>>                                  <---------ICU4               <---------ICU4                 -------                        --------->ANAC58                  ------>ZmHOX2a(2)          --------->HSFB2a(2)                        --------->ANAC58                 <------ZmHOX2a(2)           <---------HSFB2a(2)          --------->CCA1(2)      <---------YAB1         --------->AGP1           <---------ANAC46 ->AtSPL8--------->AHL20(1)    --------->YAB1           <---------ARR11(3)       <---------ANAC58 --AtSPL8<---------ARR11(3)   ----------->GT1           --------->ARR11(3)       <---------ANAC58 ------YAB1           --------->MYB52(1)                <---------AGP1  ------>ZmHOX2a(2)  >>>>>>>>>TBF1 --->RAV1(1)<---------YAB1    <---------YAB1    --------->ANAC46<----------DOF2<---------AHL20(2)   taatagaacaatatatgaatgaagaaacgaaaatgataatttcttgctacacaaaatagatctaatcttttcgatctctattttcttggagaagaagaag  1188500                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    -                                                                                                    -                                                                                                    <                                                                                                  <--                                                                                                 ----                                                                                                 ----                                                                                               ------                                                    ----------->GT1                    ------->TEIL <                                          --------->CCA1(2)                            --------->GLK1(2)                                         --------->ARR14(2)                         --------->ANAC58<    <----------ID1             --------->DAG2      --------->DAG2                   --------->ANAC46<   ------------------------>ANAC81   --------->ALFIN1       <------MYB83----------->GT1--------->ARR14(2) ----->GT1                    ---------->DOF2     ---------->DOF2     ----------->GT1  <---------ARR14(2) >>TBF1                   <------ZmHOX2a(1)     <------ZmHOX2a(1)<---------ANAC46   --------->ANAC58- ----------------->ANAC81----------->GT1 <---------ARR14(2) <------MYB46(1)       --------->MYB52(1)=   aaaaaaacgagaaaaacaagaacaagaaggagaaaagcagtgggatatgaggaaaagtagataggtgaagtagagagaaaaacctcacgaatccaagggc  1188600   <-----------HVH21 ---------O2 ---------ANAC55(2) ---------ANAC55(1) ---------ANAC58 -------->O2<---------YAB1 -------->ANAC55(2)          --------->TGA2(2) ---------ANAC46            <-----------TGA1     <---------HSFB2a(1) -------TGA2(2)            --------->ANAC55(2)   --------->HSFB2a(1) ------->TGA1              <---------ANAC55(2)   <---------HSFC1(2) ------->HVH21             --------->bZIP60(1)   --------->HSFC1(2) --->At4g35610             --------->ANAC46    <---------GLK1(2) ---------TGA1a          <-----------GT1  --------->CCA1(2) ---------bZIP60(2)   ------>ZmHOX2a(1)  --------->AHL20(1)                        <---------ANAC58 ---------ANAC58      <----------DOF2   --------->AHL20(2)                         <---------ANAC58 -------->TGA1a --------->ALFIN1    --------->AHL20(2)<---------YAB1               <---------ANAC46 ================================bZIP_DOF--------->ARR11(3)         --------->REM1(2)        --------   tgacgtgtcaacttataagtggtccttttacgtcataagaaaatatatggaatcttctgattttagaccgtgaagaaaacaaattgtgtgaaactataag  1188700                                           --------->MYB52(2)                                           --------->MYB46(2)                                           ----------->GT1                           ------->GAMYB               --------->YAB1            <--------P              <------ZmHOX2a(2)  <---------MYB52(2)              <---------AHL20(2)         <---------MYB52(1)   <---------ETT(2) --------->ANAC58              <---------YAB1            <---------MYB52(1)------>ZmHOX2a(2)    --------->ANAC58   <--   <---------AtLEC2               ----------->HVH21 <-----------GT1            --------->ANAC46------ -->DOF2     --------->AHL20(2) <---------ICU4<---------AHL20(2)<---------ARR14(2)  --------->MYB46(3)   cgaatgcatggagcatataatagttgatattcaatactgaccggttagttaatttttcgatctgtcgatccaaagtctcacacacaacaaactaatcttg  1188800  Previous    Next  AGI:  At5g04275.1    Description:  MIR172/MIR172B; miRNA Range:  from: 1188212    to: 1188300    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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