Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                               --------                                                                                            ---------                                                                                           ------>MYB46(1)                                                                                           ------>MYB83                                                                                           --------->ARR14(2)                                                                                           <---------ARR14(2)                                                                                           --------->MYB52(1)                                                                                         <---------MYB52(2)                                                                                         --------->MYB46(3)                                                                                         <---------MYB55(2)                                                                                         <---------MYB46(2)                                                                                         --------->DEAR3(1)                                                                                        --------->ANAC46                                                                                       --------->MYB52(1)                                                                                      <---------ALFIN1                                                                                     --------->MYB46(3)                                                                                     <---------MYB55(2)                                                              ---------->DOF2        --------->DEAR3(2)                                                           --------->LBD16          ------->TEIL                                                          <---------ANAC55(2)    --------->ANAC46                                                  <---------ARR14(2)             --------->ANAC58                                                  --------->ARR14(2)             <---------MYB52(2)  --------->AHL20(2)                           <---------HSFB2a(2)               --------->ANAC58 ----------DOF2                                --------->HSFB2a(2)            <---------WRKY45 -----ZAT18                                   ----------------->AGL1          <---------WRKY12  <---- ---->ZAT18          ---------->DOF2     ---------->DOF2  <---------ANAC46    <---------WRKY38(1)   ggcttttaatagttaatgctactaaatgcgaaaacagtaatccaaaagtccagaactggtccgtaaaagagtcagtctggtccacgaaccaccgaaccgc  1169100                         --------->ZAT6                         --------->ANAC58                         --------->ANAC58                        --------->ZAT18                       <---------ALFIN1                                        ----------->GT1                      <---------ZAT18                                     --------->TOE2(3)                      --------->ZAT18                           --------->MYB52(1)                     --------->ANAC58                          --------->DEAR3(1)          <---------KAN4(2)                     --------->ANAC58                       --------->ANAC46  <---------TOE2(3)                    <---------ZAT18               --------->ANAC46      <---------ATHB12 <------ZmHOX2a(1) ->MYB46(3)        <---------ANAC46               --------->ANAC58      --------->ICU4 --------->MYB59 >SPL7   <---------At4g35610                      --------->ANAC58 ------->GAMYB --------->AHL20(2) -----MYB52(1)    <---------ZAT18               <---------ALFIN1------>NtERF2---------->DOF2        <   tggtttaagttatctgatactgcgcgcacactagtaagagtttagttatcccacgctaacatgcgccaacggcaaacattaaagtaaattaggaattttc  1169200                                                                     --------->ZAT18                                                                    ------->GAMYB                                                                 --------->ARR14(2)                                                                 <---------ARR14(2)                                                                 <---------ALFIN1                                                              <---------ANAC58                                                              --------->ANAC58                                                              --------->ANAC58                                                              <---------ANAC58                                                              --------->ANAC55(2)                                                          <-------GAMYB                                                         <---------MYB46(3)                 --------->ANAC46                --------->ARR14(2) --------->RAP2.6(2)             <----------DOF2         <---------ANAC58  <-----------HVH21       <---------CCA1(2)          <---------ARR11(3)         <---------ANAC58  --------->LBD16<---------ALFIN1    <-----------GT1              <----------DOF2<---------MYB52(1) --------->MYB46(3)               < ---------ARR11(3)     <----------DOF2      ------>ZmHOX2a(1) <---------ANAC55(2)             ------>ZmHOX2a(1)   aagatttaacaatttctttacacaactttctctctctttgcttctcctccgtttctccgtcgttgcgcaaccgcacagttcatatcgtttcttctcctca  1169300                                      --------->ANAC58                                      <---------ANAC55(2)                                      <---------ANAC46                                      ----------->GT1                                      --------->ANAC55(2)                                      --------->ANAC58                                      <---------ANAC55(1)                                      <---------ANAC58                                   <---------MYB52(1)            <----------DOF2       <-------GAMYB       --------->At4g35610     --------->SPL7                                             <-------TEIL       <---------At4g35610   <---------SPL7    <---------YAB1                            --------->CCA1(2)       --------->LBD16      ------>ZmHOX2a(2)  <---------AHL20(2)    <---------ARR14(2) <---------ARR11(3)   --------->ARR14(2)      --------------->AtSPL3                    --------->ARR14(2) <---------ARR14(2)   --------->GLK1(2)       <---------------AtSPL3               --------->PCF5          --------->ARR14(2)  --------->ARR14(2)       --------------->AtSPL8             <------MYB46(1)       <------ZmHOX2a(1)  <---------GLK1(2)  <---------MYB46(3)--------->TOE2(3)      <------MYB83       <-----------RAV1(2)  <---------ARR14(2)<---------MYB52(1)<---------ANAC58       --------->MYB59  --------->ANAC58 ---------YAB1     <-------GAMYB  <-----------HVH21      --------->ATHB12     --------->ANAC58   tgaagattccgctgcttttgccgttgttgatcgtaccgttacgtaaaatttcattgtgttgatttggtcccgatttgaagaagccaggaagatacatctt  1169400                     <---------ARR11(1)                     ------->TEIL                     <-----------ARR10                     <---------ARR14(2)                     --------->ARR14(2)                <-----------GT1              <---------HSFC1(2)              --------->HSFB2a(1)              --------->HSFC1(2)                                                            ------>ZmHOX2a(2)              <---------HSFB2a(1)           <---------GLK1(1)                         <------------CBF             <---------KAN4(2)          <---------ANAC46                      <------------CBF        <------NtERF2--------->GLK1(2)--------->ZAT2                     ----------->GT1   <---------At4g35610        <---------At4g35610           <---------ZAT2                   ------>ZmHOX2a(2)  <---------AGP1        --------->At4g35610          --------->ALFIN1                <---------ARR11(3)<---------WOX13(1)  --------->DEAR3(2)<---------ARR14(1)<---------ZAT14                --------->ARR11(3)<---------KAN4(2)   tgaaaccggcatcggaattttcgaatctagggttttagagtgctgggtttctccactaggtttctgttcttgatcttgttaattgtgggattgatctgat  1169500                       --------->ANAC58                       <---------ANAC55(2)                       ----------------->AGL1                       --------->ANAC58                       --------->ANAC55(2)                             ---------->DOF2                       --------->ANAC46                             <---------ANAC46                      <-----------------AGL1                        <---------ANAC58     <---------ZAT2                      <---------LBD16                               <---------ANAC58     --------->At4g35610                      <-----------------AG                     <---------ARR14(2)        ----------->RAV1(2)                    <---------SPL7                       --------->GLK1(2)               <---------At4g35610           --------->ALFIN1<------------CBF             <---------GLK1(1)   <----------DOF2   <---------MYB46(3)--------->MYB52(1)          --------->ICU4--------->ARR14(2)       ------>NtERF2   tttggtgtttgaagtgctgggtcttacggaattgggaatttaagatgggtaatgttgaaattccgaattggcttaaagctttgccattggcacctgtgtt  1169600                                    --------->ANAC55(2)                                   ------>ZmHOX2a(1)                                <---------ANAC58                                     --------->KAN4(2)                                <---------ANAC46                                    <---------KAN4(1)                                <---------ANAC58                                    --------->KAN4(1)                         ------>ZmHOX2a(2)                                         <---------YAB1                        <------ZmHOX2a(2)                                          ==============HOX2a_HOX2a                       --------->ARR14(2)                                     <---------AtLEC2                       <---------ARR14(2)                                 --------->GLK1(1)      ----                       --------->ARR11(3)                                <---------ARR14(2)  <-------                       <---------ARR11(3)                                --------->ARR14(2)  <-------                      --------->At4g35610           --------->DAG2 <----------DOF2 <------ZmHOX2a(2)    ------>MYB46(1)   <---------GLK1(1)            ---------->DOF2<----------DOF2 <---------ARR11(3)    ------>MYB83      <---------At4g35610----------->GT1        <---------ZAT18   --------->ARR11(3)   tagacctacagacactgaatttgcagatcccattgcttacatatcgaaaatcgaaaaggaagctagtgcctttgggatttgcaagatcattcctccttta  1169700 --------->ANAC46                                                     --------->ARR11(3)            < --------->ANAC58                                       --------->LBD16                            <- --------->ANAC58       <---------HSFB2a(2)            --------->HSFB2a(2)                   -------- ----->ANAC46           --------->HSFB2a(2)           <-----------------AGL1         <---------TOE1(2) ---DOF2    --------->DAG2                         --------->ALFIN1  <---------At4g35610<---------ANAC46 --DAG2    ---------->DOF2--------->REM1(1)<----------DOF2         <-----------RAV1(2)  --------->ALFIN1   cccaagccatcgaaaaagtatgttttctacaacttgaacaagtctcttttgaagtgtcccgaattggtttcagatgttgacatttcgaaggtgtgtaaag  1169800                                                                                              <------     --------->At4g35610                                                                    ---------     <---------At4g35610 <------NtERF2     ----------->GT1                                 <---------AtMYB61 ---------ARR14(2)       --------->At4g35610            ---------->DOF2                    --------->ALFIN1 -----ZmHOX2a(1)--------->ZAT6          --------->MYB52(1)                          ---------->DOF2 -->DOF2     <-----------GT1      --------->MYB59   <----------ID1             --------->ICU4 <------   aggatagagctgtattcaccactaggcagcaagagttaggccaaactgtgaaaaaaaacaaaggagagaagggtaagagtaattctcaaaggagtggtgt  1169900                                                                                            <--------                                                                                         <---------ANAC55(2)                                                                                <------ZmHOX2a(1)                                                                        --------------->AGL15                                                                        <---------------AGL15                                                                       <-----------------AGL1       <                     ----------->GT1                                   <-----------------AG ---------                     <---------ANAC46                                  ----------------->AG<------ZmHOX2a(1)                     <---------ANAC58                           <---------HSFB2a(2)      <---------TOE2(3)     --------->ALFIN1<---------ANAC58                           --------->HSFB2a(2)      --------->ANAC55(2) ---ZAT6            <------NtERF2                           <----------DOF2   --------->MYB59      -- -->GT1        --------->ALFIN1     <------ZmHOX2a(2)  ---------->DOF2 ----------------->AGL1      -- ---ANAC46 ---------->DOF2   >>>>>>>>>EIN3    <---------At4g35610 --------->ANAC46       <---------TOE1(3)   taagcaggtttggcaaagtggaggcgtttatacattggatcagtttgaagctaagtcgaaagctttctacaaaacccaattaggaacggttaaggaactg  1170000  Previous    Next  AGI:  At5g04238.1    Description:  unknown protein Range:  from: 1169218    to: 1169412    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g04240.1    Description:  ELF6 (EARLY FLOWERING 6); transcription factor. similar to REF6 (RELATIVE OF EARLY FLOWERING 6), transcription factor [Arabidopsis thaliana] (TAIR:AT3G48430.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68926.1); contains InterPro domain Transcription factor jumonji (InterPro:IPR013129); contains InterPro domain Transcription factor jumonji, JmjN (InterPro:IPR003349); contains InterPro domain Zinc finger, C2H2-like; (InterPro:IPR015880); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087); contains InterPro domain Zinc finger, C2H2-type/integrase, DNA-binding; (InterPro:IPR013087); contains InterPro domain T Range:  from: 1169545    to: 1174879    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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