Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100               *TSS --------->DAG2                                <---------AHL20(2)          <------ZmHOX2a(1)                                 --------->AHL20(2)                   <---        --------->ANAC58                                    <---------AHL20(2)                   ----        --------->ANAC58                              <----------DOF2                            <---   --------->ANAC58                              <----------DOF2--------->AHL20(2)               ----   --------->ANAC58   <----------DOF2  --------->DAG2<---------ANAC58                            <---  --------->SPL7 ---------->DOF2      ---------->DOF2<---------ANAC58           <-----------GT1<-----   atggaacggcaaggacacaaaaagcttttagatgaacaaataaagttaagcctttgcttttattaattaatgtctaactaagtaacccttgtatttgtaa  1145000                      --------->AHL20(2)        <---------ANAC46        <---------ANAC58        <---------ANAC58 ------ANAC55(1)  <---------AHL20(2) ------->GT1      --------->AHL20(1)                         --------->ARR11(3) ------ANAC55(2)  --------->AHL20(2)                         <---------ARR11(3) ----->ANAC55(2) --------->AHL20(2)                       <---------------------WRI1 ------ANAC46    <---------AHL20(2) --------->YAB1    --------->MYB52(1)                            < ------GT1----------->GT1  ----------->GT1     <---------ANAC46                      ----------->GT1-   cgtattatttgcttgttaattaaattaagtagataatatcaaaatcgttgcctaaataacgacgatattatcaaatcgatatttgtattgtgaaactata  1145100              --------->CCA1(2)             <---------ARR11(3)                                                                     <             --------->ARR11(3)                                                                    <-    <------MYB83                                             --------->ZAT6                        --    <------MYB46(1)            ----------->GT1             --------->YAB1                         ---    ----------->GT1   --------->ARR14(2)                  <---------AHL20(2) <---------YAB1   <------ ---------ARR14(2)    <---------ARR14(2)      --------->ANAC58         <---------AHL20(2)   --------- -------->ARR14(2) <---------TOE2(3)          --------->ANAC58         --------->AHL20(2)  <---------YAB1   tggatttggttaaaagatttagaggttatggtgaagaaaattacattcaagtaagagtatataatactactatttttttatgtttcatgaaatatgataa  1145200     <---------TOE2(3) --------->YAB1--------->CCA1(2)                               <---------ATHB12 ---------YAB1--------->AHL20(1)                    <-----------GT1 --------AHL20(2)             <-------GAMYB     --------->AHL20(1) ------->AHL20(2)     <---------ARR11(3)        <---------AHL20(2)                            ------- ------>YAB1 --------->AHL20(2)   <---------TOE2(3) --------->YAB1                <---------ARR11(3) ---YAB1 --------->AHL20(2)  <-----------RAV1(1)--------->AHL20(2)                --------->AHL20(1) >YAB1----------->GT1 --------->ARR11(3)       --------->AHL20(2)                 <---------AHL20(1)   ttttaataagataaaatatatgaagataattctgttgaggctatttgaaattaattacaacacaaatcaaacgaactaatacaatatatcaaaccgttcg  1145300                                                    ------>ZmHOX2a(2)                                                   <------ZmHOX2a(2)                                           <---------At1g77200         ----------->GT1                                           <---------ANAC46           <---------YAB1                                         ------------>AtMYB77        <------------CBF                                   -------->HAHB4 --------->ARR11(3)--------->ATHB51                                   --------->YAB1 <---------ARR11(3)--------->ATHB12                                  <---------YAB1  --------->AGP1    -------->ATHB1                            --------->ANAC58  <---------MYB52(1)    <---------ICU4                ------>MYB46(1)  <-----------TBP  <---------AGP1   <---------YAB1                ----                ------>MYB83--------->ANAC46 <-------GAMYB------------>CBF                       ----       <---------ANAC46     --------->ANAC58<---------MYB46(3)     --------->ICU4                <--- -->SPL7      <---------MYB59--------->LBD16<---------DEAR3(2)    <----------DOF2                <---   aaattagtgtcttaaaccgaactaaaacccccgctaattatagtgtcggttagatctaattccaatggcattattgtaaatagtttgaaattagagagaa  1145400              ------>ZmHOX2a(1)          --------->ZAT18       *TSS        --------->AHL20(2)          <---------ZAT18     --------->ANAC58                                                ------- ----->HSFB2a(1)              --------->ANAC58  <---------ICU4          <---------AHL20(2)  --------- ----->HSFC1(2)        ----------->HVH21  --------->At4g35610          <---------YAB1       --------- ------HSFB2a(1)    --------->GLK1(2)   <---------WRKY12  ---------->DOF2   <-----------GT1 <-------- ------HSFC1(2)  ------------>CBF       <---------WRKY38(1)    <----------DOF2   <----------DOF2   atttcccaagagtgtccttgacaatctgacacaagcttgaggtcaactaaatatcacattcaaagctttgatttttattttctctttcgacgaaaatctc  1145500                                                                                                 ----                                                                                          ------>ZmHOX2a(1)                                                                                         --------->TOE1(2)                                                                                         --------->TOE2(2)                                                                                      --------->ARR11(3)                                                                                      --------->ARR14(2)                                                                                      <---------ARR11(3)                        ------>ZmHOX2a(2)                                             <---------ARR14(2)             <---------MYB52(1)                                                      <----------TaMYB80            ------>ZmHOX2a(1)                                                        <---------GLK1(1)            <----------DOF2                                                          --------->GLK1(1)        <---------ARR14(2)                                                          <---------ARR11(3)        --------->ARR11(3)                                                          <---------ARR14(2)        --------->ARR14(2)          <---------ARR14(2)                              ---------->TaMYB80        <---------ARR11(3)         <---------HSFB2a(1)                              --------->ARR11(3)  <----------DOF2      --------->GLK1(1) <------------------------ANAC81            --------->ARR14(2) -->TOE2(3) ===================HOX2a_HOX2a          --------->TOE2(3)              <------ZmHOX2a(1) >ARR11(3) --------->TOE2(3)       --------->HSFB2a(1)         --------->ANAC58  >>>>>>>GRF7 ------>NtERF2 >GLK1(2)<------ZmHOX2a(2)         --------->HSFC1(2)          --------->ANAC58 <-----------RAV1(2) -ARR11(3)------>ZmHOX2a(2)        <---------HSFC1(2)      <-----------HVH21  <-----------HVH21  ----   aaaactttaagatcctttatttctgatctctcttcgaagtttcggtttttgttttcttaattgtcaagtcatttcatcgatgtcaggatatcctccgact  1145600                            <------NtERF2                            --------->At5g28300                          <---------DEAR3(1)                         --------->ATERF1(1)                        <---------ERF1                        <---------DEAR4(2)                        <---------RAP2.6(1)                        <---------ATERF1(1)                        <---------RAP2.3(1)                        <---------ORA47(2)                       <---------RRTF1(3)                       <---------DEAR3(1)                       <---------ATERF1(2)                       <---------RRTF1(2)                       <---------RAP2.6(2)                       --------->DEAR3(1)                       <---------RAP2.3(3)                      <---------ABI4(1)                      --------->ATERF1(1)                     <---------RAP2.3(1)                    <---------RAP2.3(2)                 <---------ARR14(2)                 --------->ARR14(2)                 <---------MYB52(1)                <-----------HVH21                <-------GAMYB              <---------TOE1(3)            ------------>AtMYB77           <---------MYB52(1)        ------->GAMYB  ------->GAMYB           --------->ARR14(2)       --------->MYB46(3)           <---------ARR14(2)      -------->P       <---------ALFIN1          <-------GAMYB<---------DREB2C(2)    --------->TOE2(3)                                    --        <---------TOE2(3)<------NtERF2        --------->AtMYB61                                   ---        <---------TOE1(3)<---------ABI4(1) --------->AtMYB61                              <------ZmHOX2a(2)        <---------ANAC46------>NtERF2--------->AtMYB61 <---------DAG2  <---------ARR14(2) ===========      --------->MYB52(1)<---------RRTF1(1) <---------ALFIN1         <---------ANAC46     --------->ARR14(2)      ------------>AtMYB77<---------ANAC46 --------->DEAR3(1)      <---------LBD16       <---------ARR14(2)     <---------ARR14(2)<---------RAP2.3(2)--------->MYB46(3)      ------>NtERF2 ------>ZmHOX2a(1)----  <---------TOE2(3) <---------RAP2.6(2) <---------ALFIN1          --------->LBD16     --------->ANAC46  <---------TOE1(3)<---------At5g28300  --------->ANAC46        <---------LBD16 =================HOX2a_HOX2a ----->ANAC58 <---------ANAC46     ------->TEIL    --------->MYB46(3) <------NtERF2<---------SPL7<--- ----->ANAC58 <---------TOE2(3) <---------ATHB12   <---------MYB55(2)--------->LBD16 <---------LBD16   agccaaggttacggttacggttacggcggcggtaatcaacctccaccacctcaaccaccttactcttccggcggaaacaatcctccctacggatcatcaa  1145700                                                                          --------->GLK1(1)                                                                          ===========================                                                                         <---------ARR14(2)                                                                         ------->TEIL                                                                         <---------ARR11(3)                                                                         --------->ARR11(3)                                                                         <-----------ARR10                                                                         --------->ARR14(2)                                                                        <---------CCA1(2)                                                                      --------->ANAC58                                                                     ------->TEIL                                                                     <-------TEIL                                                                     --------->SPL7                                                                    --------->SPL1(1)                                                                   <---------SPL7                                                                 <------NtERF2                                                                 <---------------AtSPL3                                                                ------>NtERF2                                                                <------------------SPL14                                                               --------->At1g77200                  <                                                               --------->DREB2C(2)               ----                                                               --------->RRTF1(3)               -----                                                               --------->RAP2.3(2)            ------>NtERF2                                                               --------->RAP2.3(3)            -------                                                               --------->DEAR3(1)            <-------                                                               ----------->HVH21             --------                         --------->ANAC46                     <------NtERF2------>ZmHOX2a(2)---------                         <---------DEAR3(1)                   --------->ORA47(2)          <---------ALFIN1                       --------->MYB52(1)                     --------->ATERF1(1)        <---------ZAT2                       <---------STY1(1)                      --------->ERF1             --------->ZAT2                       --------->STY1(1)                      --------->DEAR3(2)     --------->ANAC46                      <---------SPL7                 ============================HOX2a_HOX2a---------                   ------->TEIL              --------->YAB1   --------->RAP2.3(1)   <---------LBD16 -          ------>ZmHOX2a(1)    <-----------ARR10     =============================HOX2a_HOX2a-------- ------>P <---------SPL7--------->SPL7 --------->TOE2(3)----------->RAV1(2)========================== ---->GAMYB --------->SPL7   --------->ABI4(2) <---------YAB1------>NtERF2<------ZmHOX2a(2)<---------ATERF1(1) ================HOX2a_HOX2a ------>NtERF2   <---------ICU4  <---------RAP2.3(1)  <---------SPL7<---- ----->MYB46(3)  --------->ZAT14    --------->ANAC46 ------>ZmHOX2a(1)--------->ANAC58   <---------ABI4(2) ------MYB111(2) <---------SPL7------->TEIL <---------ATHB12 <---------ATERF1(1)<---------YAB1<------   caacctcttctccttacgctgtaccctacggcgcatctaaaccacaatcatcatcctcttctgcgccgacgtacggatcttcatcatacggagcaccgcc  1145800        <---------ANAC46     ------------------>SPL14                                                                <-------    --------->At4g35610                                                                      --------    --------->ZAT2                                                                 --------->AtMYB61    <---------At4g35610                      ---------->DOF2                       <---------ALFIN1    <---------ZAT2                       --------->RAP2.6(2)                       --------->DEAR3(1) ======HOX2a_HOX2a                       --------->RAP2.3(2)                      --------->MYB46(3) -----------HVH21                        --------->RAP2.3(3)                    <---------ALFIN1 -->NtERF2                               --------->ANAC46                   <---------ZAT2   <------- ---->DEAR3(1)          --------->LBD16  --------->DEAR3(1)                 <---------At4g35610     - -->ABI4(1)            --------->HSFB2a(2)--------->LBD16                   --------->ZAT2  <-------- --ALFIN1<---------SPL7<-----------RAV1(2)------>NtERF2                <---------LBD16    --------->HSFB2a(2) ->DREB2C(2)    <------NtERF2           --------->RAP2.3(1)          <---------ARR14(2)   <---------HSFB2a(2) >ORA47(2)     ------>NtERF2          --------->ANAC46              --------->ATERF1(1) ----------->RAV1(2) >DEAR4(2)  --------->ANAC58          --------->ANAC58           <------ZmHOX2a(1)<---------MYB55(2)< ----->ZmHOX2a(1)      <---------HSFB2a(2)<---------RAP2.6(3)    ==================================== ->DEAR3(1)--------->SPL7 <------ZmHOX2a(1)<------NtERF2         --------->ATERF1(1)  --------->DEAR3(1) ======HOX2a_HOX2a     <---------LBD16--------->ANAC58      --------->ANAC46<---------GLK1(1)<------- -----ALFIN1--------->ANAC58        ---------->DOF2        --------->SPL7   --------->GLK1(1)-------- ---ATERF1(1) --------->ANAC46   --------->REM1(1)        --------->MYB52(1)--------->At4g35610------   tccttcagctccgtacgcgccttctccaggagactacaacaagccgccaaaggagaaaccatacggaggaggctacggagctccaccaccgtctggatct  1145900  Previous    Next  AGI:  At5g04160.1    Description:  phosphate translocator-related. similar to phosphate translocator-related [Arabidopsis thaliana] (TAIR:AT3G10290.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN61104.1); contains InterPro domain Protein of unknown function DUF250 (InterPro:IPR004853) Range:  from: 1142783    to: 1144913    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g04170.1    Description:  calcium-binding EF hand family protein. similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT3G10300.3); similar to Os12g0137100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066106.1); similar to hypothetical protein OsJ_033791 [Oryza sativa (japonica cultivar-group)] (GB:EAZ19582.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) Range:  from: 1145432    to: 1147782    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version