Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                             <---------AHL20(2)                          ------->GAMYB                                                   --------->YAB1                         --------->MYB46(3)                                          <---------MYB52(1)                         <---------MYB111(2)                                        <-------GAMYB                       <-----------GT1                               >>>>>>>>>>>>>>>>>LFY --------->AHL20(2)                       --------->YAB1                            --------->AHL20(2)<------MYB46(1)                    <---------ICU4                               <---------AHL20(2)----------->GT1                    --------->YAB1                              --------->AHL20(2) <------MYB83                   <---------AHL20(2)                  ----------->GT1            --------->MYB59               <---------YAB1          --------->TOE2(3)    --------->AHL20(2)<---------MYB46(3)   cattttctattttgtttataaataataacaacctttcaaaacataaatagatgaaaattgtataaattaaaatccattgtttgttcggttaataaaaatg  1129500                                               --------->CCA1(2)                                              --------->ARR14(2)                                        <-----------RAV1(1)                                  <---------------AGL15              ----------->RAV1(2) ------>ZmHOX2a(1)        <-----------GT1           <----------DOF2    <---------AHL20(2)           --------->TOE2(3)                    <-----------ARR10    --------->AHL20(1)        ------->TEIL  <---------MYB46(3)        --------->ARR11(3)       <-----    <---------AHL20(1)     --------->ANAC55(2)<---------ARR14(2)      <---------ARR11(3) --------->YAB1    --------->AHL20(2)    --------------->AtSPL8    ------->TEIL  <-----------GT1     <---------ICU4   --------->AHL20(2)   <---------AHL20(2) <---------ANAC46<------ZmHOX2a(1)       --------->YAB1<---   tatgaataaattacaaacctgactattttatgtatcctttatctggtggatatgaattttaggagtagtcactatcttccctctatcaaaatgacaattt  1129600                                                                                                  ---                                                                                                 <---                                                                                                 ----                                                                                                -----                                                                                                <----                                                                                             <-------                                                                                             --------                                                                                            <--------                                                                                      --------->PCF5                                                                                      --------->PCF2                                                                                     <---------SPL7                                                                                     <-----------HVH21                                                                                    <---------ATERF1(1)                                                                                    <---------DEAR3(2)                                                                      <---------ARR14(2)    <--------                                                                      --------->ARR14(2)    ---------     <---------MYB52(1)    <----------DOF2                            <---------GLK1(2)   <---------TOE1(2)    --------->TOE2(3)    ----------->GT1     <---------ANAC58      ------->GAMYB    <---------MYB46(3)    --------->TOE1(3)    --------->LBD16     <---------ANAC46      <---------MYB59 <---------RAP2.6(2) -------->P            <---------LBD16---------->DOF2       --------->WOX13(1)     <---------ANAC58 ----AHL20(2)        <---------ARR14(2)      <---------ANAC58   --------->MYB52(1) <---------DREB2C(2) --------GT1         --------->ARR14(2)--------->DAG2   ----------->GT1            <---------ANAC58   atctacccttaatttcatgtctcaatccggtttaatgaccaaaagtgtcgtatcaaaccggttaatcaaccgaattctccaaatggcggtcccagattcc  1129700         --------->ANAC58       --------->ZAT6   --------->DOF5.7(2)   <---------MYB52(1)  <-------GAMYB                                          --------->ANAC58 --->NtERF2                                              --------->ANAC46 ------ETT(1)                            <---------HSFC1(2)      <-----------HVH21 ------->HVH21                           <---------HSFB2a(1)    ------->GAMYB ---->HSFB2a(2)                          --------->HSFC1(2)    --------->MYB46(3) -----HSFB2a(2)                          --------->HSFB2a(1) ----------->RAV1(1)                 ---- --GLK1(1)                           ----------->GT1     --------->ANAC58                      <----- ->GLK1(1)                         ---------->DOF2    <---------ZAT14                         <------ -ARR14(2)                    <---------------AGL15   --------->ZAT14              --------->LBD16 -GLK1(2)--------->ANAC58     --------------->AGL15   <---------ZAT18   <----------DOF2    ---------- >ARR14(2) --------->YAB1     <----------DOF2         --------->ZAT18<---------ALFIN1    <-----------GT1   cgaccgttaccactcaaaacattttgttttttctttaaaaagaaaattcgattttgtgcactccaacagtcacacttttaaaatccccaaaatacccttt  1129800                                                      ----------->GT1                                                     *TSS                                                     ------------------------>ANAC81                                                   --------->MYB52(1)      --------->ZAT14                           --------->ANAC58      <---------ZAT18                           --------->ANAC55(2)      <---------ZAT14                           <---------ANAC55(2) <-------TEIL                              <---------ICU4 ----->MYB59                  <---------ANAC46  --------->ANAC46 ----MYB52(1)             --------->ARR14(2)    --------->ANAC58---------->DOF2                ------ ----DOF2 <----------DOF2 <---------ARR14(2)   ------------------------>ANAC81            --------->At4g35610 ------->AGL1      ---------->DOF2        --------->AHL20(2)---------->DOF2          >>>>>>>>>TBF1   aggtacagagcacttttattcaaaagcgaattttgtgtaaacgaataaatacgaaacagagaaaaagaaagagagagagagagagaagaagaagctctca  1129900                                                                               <---------ZAT18                                                                               <---------ZAT14                                                                               --------->ZAT14                                                                               --------->ZAT18                                                                              <---------ZAT6                                                                        <---------AHL20(2)                                                                   <---------AHL20(2)                             <<<<<<<<<TBF1                         <---------AHL20(1)           <----        <---------MYB52(1)<<<<<<<<<TBF1     <-----------GT1        --------->AHL20(2)    --------->TOE2(3)    <---------At4g35610<<<<<<<<<TBF1    <----------DOF2      <----------DOF2 <---------------AtSPL8 --->YAB1        ------>ZmHOX2a(1) ------>ZmHOX2a(1)      <-----------GT1    --------------->AtSPL8 -   tcactcatctgttatcttcctcttcttcttcttcttcctcttcttttttccttccacatttatctttattttattttttagtgtacatttatcttatttt  1130000    --------->ANAC58                                                    ----------->RAV1(1)    --------->ANAC46                                                   --------->ANAC46    --------->ANAC55(1)                                      <---------GLK1(2)  <---------ZAT2    --------->ANAC58                                        --------->HSFC1(2)  --------->ZAT2  -----  <---------ALFIN1                                       ------>ZmHOX2a(1)     ------>MYB83   ------- -------GT1    <---------AHL20(2)                ----------->RAV1(2) --------->ANAC46    <----------DOF2 -------->ANAC46   <-----------GT1          <----------DOF2 <---------HSFC1(2) ------>MYB46(1)<------   acacacacgcctctcattttttttcatttcaatggcgatgcaatctctttcccctgttcctaagcttctctccacaacaccaagctctgttctttcttct  1130100          <<<<<<<<<TBF1   <---------ARR11(3)   --------->ARR11(3)               <---------ZAT6                                        --------->ANAC58 --------->ANAC58         <---------TOE1(2)                       <---------ANAC46        --------->ANAC58 --------->ANAC58        <---------MYB52(1)              --------->ANAC58               <---------ALFIN1 ------>HVH21           <-------GAMYB                    --------->ANAC58              ------>ZmHOX2a(1) -->At4g35610          <---------ANAC58              <-----------RAV1(2)         ------>ZmHOX2a(1) << ---At4g35610          <---------ANAC58           <------ZmHOX2a(1)          ----------------------->TaNAC69(2)   gacaagaacttcttcttcgtcgatttcgttggattatactgtaagtccaagaggaccagacgcagacttcgtggagactcttcctcttcctcacgctctt  1130200                                                                                ------>ZmHOX2a(1)                                                                         ===================HOX2a_HOX2a                                                                         <------ZmHOX2a(2)                                                                         --------->GLK1(1)                                                                         ==============HOX2a_HOX2a                                                                        <---------ARR11(3)                                                <-------MYC2            <-----------ARR10<---------At4g35610                                   <---------DOF5.7(2)                  --------->ARR11(3)                                 --------->DOF5.7(2)                    <---------ARR14(2)                                 <---------MYB52(1)       <---------ANAC46------>ZmHOX2a(2)      ----                                <-------GAMYB   ------->MYC2            --------->ARR14(2)       <---                                <---------RAP2.6(3)       <---------ANAC58=============HOX2a_HOX2a                          <---------ANAC58      ------->MYC3       ---------->DOF2   ------>ZmHOX2a(1)                          <---------ANAC58    ------->TEIL<---------ANAC58==================HOX2a_HOX2a                    ------>ZmHOX2a(1)--------->ETT(2)<---------AtLEC2  <------ZmHOX2a(1) --------->At4g35610 <<<<<<<TBF1   <----------DOF2 <---------ANAC46 <-------MYC3<------NtERF2<---------GLK1(1) <---------   cttcttctctctctcgtctttcctctgttcgtgccgttatcgaccttgaacgtgttcatggcgtctctgaaaaggatctctcctctccttcagctttaag  1130300                                                                        <----------DOF2                                                                       ------>ZmHOX2a(2)                                                                       ==============================                                            <-------MYC3              <------ZmHOX2a(2)                                            <-------MYC2              ===============================                                            ------->MYC2             <---------ARR14(2)                                            ------->MYC3             --------->ARR14(2)                                         ------>MYB83                <---------ARR11(3)              <---------ZAT14           --------->MYB55(1)           --------->ARR11(3)              --------->ZAT14          <---------MYB55(2)        <---------LBD16                    -         <---------MYB52(1)            --------->MYB46(3)   <----------DOF2---------->DOF2          -       --------->MYB52(2)             --------->ANAC58      ==================HOX2a_HOX2a           < <-----------RAV1(2)                  --------->ANAC46      =================HOX2a_HOX2a          <-- ----->ARR11(3)                       --------->ANAC58<-------TEIL   <---------ARR14(3)           --- ------ARR11(3)        <---------AHL20(2)--------->MYB52(1) ------>ZmHOX2a(1)                     <-- -DOF2<-------TEIL     --------->AHL20(2)------>MYB46(1)   --------->TOE2(3)       <--------P    <---   acctcaggttcgtttcttcactgatataaatttcacaaacacccaacgtgcaaagtttcatcctttatggggatcttttaagcaggttgctaatttggag  1130400  Previous    Next  AGI:  At5g04140.1    Description:  GLS1/GLU1/GLUS (FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1); glutamate synthase (ferredoxin). Identical to Ferredoxin-dependent glutamate synthase 1, chloroplast precursor (GLU1) [Arabidopsis Thaliana] (GB:Q9ZNZ7;GB:P93649); similar to GLT1 (NADH-dependent glutamate synthase 1 gene) [Arabidopsis thaliana] (TAIR:AT5G53460.1); similar to GLU2 (Glutamate synthase) [Arabidopsis thaliana] (TAIR:AT2G41220.1); similar to Ferredoxin-dependent glutamate synthase, chloroplast (Fd-GOGAT) (GB:Q43155); similar to Ferredoxin-dependent glutamate synthase; Glutamate synthase, large subunit region 1 and 3, putative; Glutamate synthase, eukaryotic [Medicago tr Range:  from: 1129853    to: 1138443    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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