Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                             --------->YAB1                                           <--------HAHB4                                           --------->ATHB12                                           <---------ICU4                              <---------At4g35610    <---------TOE1(3)         --------->At4g35610          ----------->GT1   --------->ARR11(3)    <---------TOE2(3)        --------->GLK1(2)         --------->GLK1(2)     <---------ARR11(3) <----------DOF2        ---------->DOF2   <---------ATHB12 <---------ANAC55(2)<------ZmHOX2a(2) ------GT1 --------------->AGL15        --------->WOX13(1)--------->MYB59    --------->ARR14(2)   cgtctttaggttactaaatatgtataaaaagcatctgataatcaatcatttggcgaaaatcaggtaaaataaaactccagatcatcaaaaactcggtgat  1114500                                                             ------->GAMYB                                   <---------LBD16          --------->MYB46(3)                       --------->ICU4                      --------->ANAC58                     --------->YAB1--------->LBD16         --------->ANAC58                    <---------ATHB12                   --------->YAB1          --------->YAB1              <-----------GT1    <---------LBD16 --------->YAB1              --------->MYB52(1)    <-   agaaagaatgaaattgaaaccagtcatgttgattttctggggaaaacaaaatcaaaatcacaaccaaaaatgtatagacaaacagaaccaattcaaaatt  1114600                                                     <---------MYB52(1)                                          --------->ANAC58                                          --------->ANAC58                                          <----------ID1                          <---------YAB1             <------ZmHOX2a(2)      --------->At4g35610                           <---------ANAC55(2)  <-----------------AGL2         ---------->DOF2   ----------->GT1           <---------ICU4 --------GLK1(1)               ---------->DOF2    <-------TEIL       --------->MYB52(1)      --------   gaattctgaaaatggatcaaaatcgatttctaacaaagagcagaacgacaaattcgttatttagacaaaactaagagaaaaattacgagagaccctatcg  1114700                                  --------->ANAC58                                  --------->ANAC46                                  --------->ANAC58                                               <---                               <---------ARR14(2)                                                ----                               --------->ZAT14                                            <----------                          --------->LBD16                                                 --------->ARR11(3)                        <---------LBD16      --------->TOE2(3)                            <---------ARR11(3)              ------>ZmHOX2a(1)--------->ARR14(2)                                         --------->GLK1(2)    --------->YAB1    --------->ARR14(2)   --------->ARR11(3)                            --------->RVE1(1)   <---------YAB1     --------->GLK1(2)    <---------ARR11(3)                      ----------->GT1 --------->YAB1       <---------ARR14(2)   --------->GLK1(2)                     ---------->DOF2 ---- ->MYB52(1)  --------->TOE2(3) <---------ZAT14        --------->TOE2(3)     ---------->DOF2   <------   gtatcatcataagctccttaatcgaatccggagtatacgcgagaaaatctcaaaatcgttagagagagagaattttagaaaagaaaagaaaaaatctaac  1114800  <---------DAG2                                                                                -----  <----------DOF2                                                                               -----  --------------->AGL15                                                                        ------  <---------------AGL15                                                                       <------ <-----------------AGL3    --------->YAB1                                             <---------MYB52(1) ----------------->AGL3    <---------ICU4                              <---------AHL20(2)  <---------AHL20(2) ------MYB59              --------->ICU4                        --------->LBD16      <-------GAMYB ----->TOE1(3)          --------->YAB1            --------->ALFIN1  *TSS  <---------YAB1 <-----------TBP -ARR10                --------->ICU4       ---------->DOF2    <---------HSFB2a(2)  ----------->GT1 ----->TOE2(3) <-----------HVH21           <---------AHL20(2)  --------->HSFB2a(2)<---------MYB52(1) -----GT1    --------->MYB46(3)       <---------YAB1          <---------LBD16    <-----------HVH21   cttacttttttaagaaccatcagcgataatcatcactcttatgaattaaagggtgtgtccatttcccagaaaatttatgaaacagtcagttatttatacg  1114900    <------------CBF ------>GT1            --------->ANAC46         ----------->TBP ---->LBD16          ----------->RAV1(1)        <---------YAB1 --->ANAC46       <------ZmHOX2a(1)           --------->YAB1 ---LBD16   --------->CCA1(2)                <---------YAB1        <-----------GT1   gagaaacattgaatatatgaggaccacataaccaaaaactctgaacgattataaaaaaaaaaactcattttacaaaatgttttgtattgcatcaaaatat  1115000                                                                                                    <                                                                                                 <---                                                                              <---------AHL20(2)<----                                                                          <---------AHL20(2)  <------                                                                      <---------AHL20(2)      -------                                             <----------DOF2          --------->AHL20(2)      -------                                             --------------------->WRI1 <---------AHL20(2)    <------                                             <---------DAG2     --------->TOE1(3)             -------                        ----------->GT1   <-----------GT1--------->TOE2(3)--------->AHL20(2) <-------                   --------->ATHB12    --------->YAB1   ----------->GT1 --------->AHL20(2)   -------- <-------TEIL     <-------TEIL   <-----------GT1 <-----------GT1--------->TOE2(3)            <-------   agattcaaaaattctaaatattcatttggaaaaatatacaattttaactttatactcatcgtaaaaccttatatatatatataaacttataaacaattat  1115100  ------>MYB46(1)  ------>MYB83 ---------MYB59 --------GT1              ------>ZmHOX2a(2)                              ------>ZmHOX2a(1) -----YAB1               <------ZmHOX2a(2)                           ------>ZmHOX2a(2) --HAHB4                 --------->CCA1(2)                          <---------GLK1(1) -->YAB1                --------->ARR11(3)                          --------->GLK1(1) -->ATHB51              <---------ARR11(3)                         <---------ARR11(3) ---ICU4                <---------AGP1                             --------->ARR11(3) ->ATHB1                --------->AGP1                           <---------YAB1 --ATHB51    <---------AHL20(1)                    ------->TEIL<---------ICU4 ->ICU4      --------->AHL20(1)                 <---------YAB1 --------->YAB1 --YAB1      --------->ARR11(3)         <---------TOE1(2)    --------->ARR11(3)             <--------   taccgacttggagaaaatattgttaagatctaagaaatattctaggtttgatgaatattagaaaatcatgatctcctagtgaatgttttctatggattat  1115200                        <---------YAB1                       --------->ARR11(3)                       <---------ARR11(3)         <---------TOE2(3)                   <--------HAHB4   --------->AHL20(1)                  --------->ICU4    <---------AHL20(1)                  <---------YAB1    --------->AHL20(2)        <------ZmHOX2a(1) <----------DOF2      <---------YAB1    ---------->DOF2<---------ICU4--------->AHL20(2)                   <---------AHL20(2)            -  <---------AHL20(2)   <-----------GT1--------->TOE2(3)              --------->AHL20(2)             <  --------->YAB1--------->YAB1 --------------->AGL15              <---------AHL20(2)                <  --------->AHL20(2)  --------->YAB1<---------AHL20(2)            --------->AHL20(2)                - -GLK1(2)   <---------AHL20(2) <---------------AGL15      <---------WOX13(1)  --------->ICU4   ------   ctaataaaaaggatttattcataattatctttacttaaaatattaatctattaatgcttaattgccaaaaaattaatgtcatatttgttacacaagaagg  1115300            --------->YAB1         --------->YAB1                                                    --------->GLK1(2)    ------>ZmHOX2a(1)                                                      --------->ICU4 -------->ARR14(2)                                              --------->YAB1  <---------AHL20(2) ---------ARR11(3)                <---------HSFB2a(2)      --------->AHL20(2)--------->TOE2(3) ---------ARR14(2)     <---------HSFB2a(2)           ----------->GT1--------->DAG2                  - -------->ARR11(3)     --------->HSFB2a(2)        --------->ALFIN1 ---------->DOF2                  < ----->GT1 <---------YAB1         --------->HSFB2a(2)<---------ANAC46<---------TOE2(3)          -----   aaaatcctctattatcagagtttttctaaaaaacttatggaagaaagaataagtggggtaaaaaaatcataaaggaaattcttaaattgtgagaaaccat  1115400  Previous    Next  AGI:  At5g04110.1    Description:  DNA topoisomerase II family protein. similar to DNA topoisomerase, ATP-hydrolyzing, putative / DNA topoisomerase II, putative / DNA gyrase, putative [Arabidopsis thaliana] (TAIR:AT3G10270.1); similar to DNA gyrase subunit B, chloroplast/mitochondrial precursor (GB:Q5YLB4); contains InterPro domain DNA topoisomerase, type IIA, subunit B, region 2; (InterPro:IPR013506); contains InterPro domain Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005); contains InterPro domain DNA topoisomerase, type IIA, subunit B or N-terminal; (InterPro:IPR001241); contains InterPro domain Range:  from: 1110447    to: 1114868    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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