Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        <---------ARR11(1)                                      <---------ARR14(2)                                      <---------ARR11(3)                                      --------->ARR14(2)                                      --------->AGP1                                      <---------AGP1                       <---------ANAC46 ------>ZmHOX2a(2)                       <---------ANAC58<------ZmHOX2a(2)                       <---------ANAC58--------->GLK1(1)      <---------MYB46(3)                    <--------P<---------ANAC58                --------->MYB52(2)                   <-------GAMYB  <---------LBD16           <---------MYB52(1)                   <---------ANAC58  <---------ARR14(1) --------->At4g35610    ----------->GT1<---------ANAC58  <---------CCA1(2)  <---------At4g35610 ------>DOF2      <---------MYB46(3)--------->LBD16--------->YAB1                     >>>>>>>>>CBP60g ->GT1         <----------DOF2<---------ANAC58    <---------YAB1 <-----------GT1      >>>>>>>>>SARD1   aaagggaagaaaatcaactttggttgcttgttgtttgccggatctacaattgatcataagctgtttgttacctccaagttgattcgaaatttggatgttg  1095600                                                                                               <-----                                                                                             <-------                                                                                            ---------                                                                                     <---------YAB1                                                                                 <----------DOF2 <---                                                  ---------->DOF2       <-----------GT1 <---------YAB1                                             --------->AHL20(2)       --------->HSFB2a(1)   <--------                                     ----------->GT1    <------ZmHOX2a(1) <-----------GT1 <---------AHL20(2)               ---------->DOF2       <---------ZAT6    ----------->GT1<---------HSFB2a(1)--------->AHL20(2)   aaatgcctaaatataagtaaagagtctatttgctggatagagataaaaaatataaagaggaaacatataagaattttctccatctttgttattatatatt  1095700                                                                 <-----------GT1                                                            <---------AHL20(2)                                                           <---------ARR11(3)                                                           <---------AHL20(1)    <---------YAB1                                         --------->AHL20(1) *TSS                                                      --------->AHL20(2) <-----------GT1                                           --------->ARR11(3) ----AHL20(2)                  <---------DAG2     <------------CBF                             <----- --AHL20(2)               <-----------GT1       <---------AHL20(2)              <------------CBF >AHL20(1)            <-----------TBP   <---------ALFIN1   <---------AHL20(2) <---------AHL20(2) ------AHL20(2)   ----------->GT1   <-----------GT1 ----------->GT1           --------->AHL20(2)    < -AHL20(1)<---------ANAC55(2)  <----------DOF2  <---------YAB1  <---------AHL20(2)        <----------DOF2   ttttttctcattacatgaataggtatatataccctttttcacacacttgtataattgttaatatatttaacttcatttcatttattgtgtttcttttata  1095800                                                              --------->WOX13(1)                                                             ------>ZmHOX2a(2)                                                            <------ZmHOX2a(2)                                                           --------->ARR11(3)                                                           <---------ARR11(3)      <---------MYB52(1) <---------AHL20(2)                --------->AGP1    <---------ANAC58    --------->AHL20(2)                 <---------AGP1           <---------WOX13(1)    <---------ANAC58 --------->YAB1             ---------->DOF2<-----------HVH21 <---------TOE2(3) ------GT1  <---------ICU4         <---------HSFB2a(2)    --------->RVE1(1)      <---------YAB1 ----------DOF2     <---------YAB1 --------->HSFB2a(2) ---------->DOF2    --------->YAB1 --------->YAB1   ctctttccgtttcatattgactatcattttataacttctaaaaactatatcaaaggaaaaagatctatcagcgataacataataagattgatcatcaaaa  1095900                               --------->ANAC46                               <---------ANAC55(2)                               --------->ANAC55(2)                               --------->ANAC55(1)                               --------->ANAC58                               --------->ANAC58                    --------->MYB52(1)                      <------------CBF                          --------->ANAC58           --------->DAG2                    --------->AHL20(1)                          --------->ANAC58          ---------->DOF2                    --------->AHL20(2)                          --------->ANAC46      --------->DAG2                    <---------AHL20(2)                     ------>NtERF2             ---------->DOF2  ------->TEIL     --------->AHL20(2)     <---------GLK1(1)--------->PCF2    ---------->DOF2   catgtatgttacaaaaaaaaaaaaaattgtttcacgtaatttggatttcacttgagaactcggcccacgaaacagacatcaaagcccaaaagtaaagtaa  1096000                                                        --------------------->WRI1                                                       <---------DEAR3(1)                                                      --------->ATERF1(1)                                                      <------NtERF2                                                     <---------ATERF1(1)                                                     --------->ABI4(1)                                                     ------>NtERF2                                                    <---------DEAR3(1)                                                    <---------ATERF1(2)                                                    --------->ATERF1(2)                                                    --------->RAP2.3(2)                                                    --------->RAP2.3(3)                                                    --------->DEAR3(1)                                                   --------->RAP2.6(1)                                                   <------NtERF2                                                   --------->RAP2.3(1)                                                   --------->ORA47(2)                                                   --------->ERF1                                                   --------->DEAR4(2)                                                   --------->ATERF1(1)                                                   --------->RRTF1(1)                                                  <---------RAP2.3(1)                                                  ------>NtERF2                                                  <---------ATERF1(1)                                                 <---------DEAR3(1)                                                 --------->DEAR3(1)                               <--                                                --------->ATERF1(1) --------->At4g35610           <--                                               <---------ATERF1(1)  <---------At4g35610           ---                                            ------>ZmHOX2a(1)     --------->ZAT14                <---                                         ------>ZmHOX2a(1) --------->ZAT14                      <----                                        <---------ALFIN1--------->LBD16                         <----                                    <---------At4g35610--------->DEAR3(1)  <----------DOF2      <----                               <---------ZAT14 <-----------HVH21  <---------ZAT14               <----               *TSS  <-----------GT1--------->At4g35610--------->ATERF1(2) <---------DAG2       <----         ------------>CBF      --------->ZAT14--------->ANAC46--------->ZAT6                   <-----   tccatttcttctccaatttgttttctccctctctgctctgctcctcctccgtcgccgccggtgaacacttcgctgaactttttctattccatggttttgc  1096100       <---------ZAT14       --------->ZAT14       --------->ZAT18       <---------ZAT18 -------At4g35610 -------ZAT2                                                                                        - ------>At4g35610                                                                                   - ------RAP2.3(1)        <---------LBD16                                                           --- -----RAP2.3(2)         --------->LBD16             <---------ANAC58                              <-- -----RAP2.6(2)        ------->GAMYB      <---------CCA1(2)                                   ------- -----RRTF1(2)     --------->MYB46(3)     ---------->ID1      --------->TOE2(3)  <----------DOF2  --- -----ANAC58     <---------HSFB2a(2)  <---------ANAC58      --------->GLK1(2)    <---------DAG2------ -----ANAC58     --------->HSFB2a(2)  <---------ANAC58    <------ZmHOX2a(1)  ---------->ID1   <------ ----LBD16 <---------DAG2   <---------GLK1(2)       <---------ANAC58     <----------DOF2  <---------GLK1(1)   ggctgagagttcactctttctacaaccgtggaatctcattccttgtctcttcttccttgaggaatcttagtactgcttcttcgctttttttgaactccga  1096200   --------->AtMYB61  --------->MYB46(3) ----->MYB46(1) ----->MYB83 ------>AtMYB61 -------MYB59 -->DEAR3(1) ------>MYB46(3)              --------->ZAT2      --------->ANAC58                             <----- >NtERF2          ----------->GT1                 --------->ANAC58        --------->ZAT14 --------->ANAC46 ---ETT(1)    --------->ATHB12<---------ZAT2      --------->ANAC46<--------P     ----------->GT1   ccaaaccatcactgagccattggtgaaatcagagctcgaagccctagttctcaagcaatactctcatggtaagttctacagtctcgttaaaaacgccgtt  1096300                               --------->ARR14(2)                               --------->GLK1(2)                               <---------ARR14(2)                           --------->YAB1                         <-----------HVH21                                           <---------HSFB2a(1)                      <------NtERF2                                                  <---------MYB46(3)                      ----------->RAV1(2)                                            --------->HSFB2a(1)                     ------>NtERF2                                                   --------->HSFC1(2)                    --------->RAP2.3(2)                                           --------->LBD16                    --------->RAP2.3(3)                                          <---------HSFB2a(2)                   --------->RAP2.3(1)                                           --------->LBD16                   --------->DEAR4(2)                                            --------->HSFB2a(2)                   --------->ERF1                        --------->LBD16<---------ANAC58                   --------->ORA47(2)                   --------->HSFB2a(2) ---------->ARF1                   --------->ATERF1(1)                 <---------LBD16  <---------ANAC58                  <---------ATERF1(1)                  --------->SPL7   ------>ZmHOX2a(2)    <---------ANAC58--------->ATERF1(2)      --------->LBD16           <------ZmHOX2a(2)    <---------ANAC46<---------ATERF1(2)      ------>NtERF2            <---------ARR14(2)    <---------ANAC58--------->DEAR3(1)      --------->ANAC46      <---------At4g35610<---------HSFC1(2)  ------>NtERF2  --------->ANAC46          <---------LBD16   --------->ARR11(3) <---------LBD16 ----MYB52(1)------>ZmHOX2a(1)<---------GLK1(2)      <---------SPL7   --------->ARR14(2)   tctctgccttgtgtccttctcgccgcctgtcagaatctgtctctctccgccaattcgtccggagatttagccgatcgtgtctcccggaggttctcaatcg  1096400                 --------->ANAC58                 --------->ANAC58                 <---------ANAC55(2)                <-------TEIL               --------->ARR14(1)               --------->CCA1(2)              <---------ARR14(2)              --------->ARR14(2)              --------->ARR11(1)            ----------->ARR10          <------NtERF2         ------>NtERF2        <---------ANAC58        <---------ANAC58                                    <---------CCA1(2)        <---------ANAC46                         <---------ANAC58     <---------RAP2.3(3)                         <---------ANAC46                                  --   --------->ALFIN1        <------MYB46(1)       <---------ANAC58                              ------ --------->CCA1(2)         <------MYB83     <-----------RAV1(1)                       --------->AHL20(2)   aagaaatggggcgcgagatacgcgaaggcaggtttgatattcgttcatgttgcgtcgaattcatctcttcaagtcttgttcttcccaatttaaaactcaa  1096500  Previous    Next  AGI:  At5g04047.1    Description:  similar to Expressed protein [Arabidopsis thaliana] (TAIR:AT4G10895.1); contains InterPro domain Plant self-incompatibility S1 (InterPro:IPR010264) Range:  from: 1095056    to: 1095701    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g04050.1    Description:  maturase-related. similar to intron maturase, type II family protein [Arabidopsis thaliana] (TAIR:AT1G74350.1); similar to hypothetical protein OsI_023184 [Oryza sativa (indica cultivar-group)] (GB:EAZ01952.1) Range:  from: 1096015    to: 1098920    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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