Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                         <---------DEAR3(2)                                       <------MYB46(1)                                --------->YAB1                               <------ZmHOX2a(2)                 ----------->RAV1(2)                       --------->bZIP60(1)                       --------->At4g35610            -----                       --------->TGA2(1)                         <---------At4g35610            -----                    --------->ICU4     <------MYB83             <-----------------------TaNAC69(2)         <-----------GT1     ------->GAMYB                     <---------ARR14(2)             <------      <----------DOF2  <---------REM1(1)                 --------->TOE1(2)                  ---------      ================================HOX2a_HOX2a        --------->TOE2(2)             -------->P      ------>ZmHOX2a(1)<---------bZIP60(1)     --------->ZAT14 <-----------GT1         ------>MYB83 ------ALFIN1    =====================HOX2a_HOX2a       ----------->RAV1(2)            ------>MYB46(1) ----------AGL1  ------>ZmHOX2a(1)     ----------->GT1 ------->TEIL----------->HVH21  ------>ZmHOX2a(1)   cactggtcctttaacattcctcatgatgtaacgatcagagtcggtaaacttcactcgaacctgagtaacctgaccccttgaaccagtcctacccatgacc  1028700           <---------ZAT18          <---------ANAC46          <---------ANAC58     --------->AtMYB61    --------->GLK1(2)     <---------ALFIN1     <---------ARR14(2)  ------->GAMYB   <---------AGP1  --------->AtMYB61 ------>ZmHOX2a(2)          ------->GAMYB  --------->ANAC46<---------ARR11(3)           --------->AtMYB61 --------->MYB46(3)<---------At4g35610        --------->MYB46(3)                --------->YAB1      - <---------MYB55(2)--------->At4g35610       -------->P--------->AtLEC2      --------->WOX13(1) ----- ---->TOE1(3)  <----------DOF2            <---------ATHB12                --------->TOE2(3)     <---- ---->TOE2(3) <---------ANAC58          --------->WOX13(1)           --------->AHL20(2)   --------->ANAC46 ---ARR11(3)  <---------ANAC58    <---------YAB1  XXXXXXXXXXXXXXXXXXX>MIR172B* <---------ATHB12<----- -->HVH21 <---------ANAC58--------->ARR14(2)--------->WOX13(1)    --------->TOE2(3)  <-------TEIL   <   ttaaccaccacagcgtgcttgatctgagaatccattctgattcaatcaaccaaaaccatgaaaattcacattaaaacatcaatcaaatgcatacacaatc  1028800                     <---------ATHB12                    --------->ANAC58         <---------ANAC46 <----------DOF2        <-------TEIL--------->ANAC58              --------->GLK1(1) -------->ZAT14    --------->WOX13(1)             <---------GLK1(1) ---->YAB1      --------->ANAC58              --------->YAB1 <---------YAB1                       <-- -----ICU4    ---------->DOF2           --------->YAB1<---------ANAC46                         <----- ----ATHB12--------->AtLEC2            <---------YAB1 <---------ANAC58                         ====== ---------ZAT14 --------->ANAC58   <---------GLK1(2)  <---------ANAC58    --------->YAB1  --------->YAB1   agtacacagtttcatgtaaagcaatcaactttacagagattatcacaatcagaattccttgttatgaaagtttcaatcttcagagtttctcatcgtaaca  1028900                                                                --------->ANAC58                                                                --------->ANAC46                                                                --------->ANAC58                                                        <-------TEIL         <---------TOE2(3)                             --------->ARR14(1)    --------->ZAT6                                    --------->ARR11(1)  ----------->RAV1(1)                                 <---------ARR14(2) ----ZmHOX2a(1)                                       --------->ARR14(2)      --------->At4g35610 ------RAV1(2)                                        <---------GLK1(2)    --------->At4g35610 =============RAV  --------->AHL20(2)            --------->MYB52(1)        <---------At4g35610   ggagcaacactagggtttcaattatctaagaaaacaggggctaacttcaaataacagattcgatacaagacagatttagcagaagaaaatgtacaagaga  1029000                                                                          --------->LBD16                                                                          <---------RAP2.3(1)                                                                         <---------DEAR3(1)                                                                         <---------RAP2.6(2)                                                                        <---------LBD16                                                                       --------->ALFIN1                                                                     --------->At4g35610                                                                     --------->GLK1(1)                                                                     <---------At4g35610                                                                     <---------GLK1(1)                                                                    ----------->ARR10                           <---------ARR14(2)                    <---------ANAC46                           --------->ARR14(2)             <---------TOE2(3)<------NtERF2                         ----------->ARR10                <---------TOE1(3)------>NtERF2                 ----------->RAV1(1)        <---------ARR14(2)  <---------LBD16               <-------TEIL<---------ARR11(3)<---------GLK1(1) --------->MYB52(1)              --------->CCA1(2)             --------->ARR14(2) <---------WRKY18(1)        -----------          <---------HSFB2a(2)               <---------ARR11(3)--------->WRKY12     <---------ANAC58--   <---------ATHB12 ------->GAMYB <---------DOF5.7(2)  <---------REM1(1)<-------TEIL<-----------HVH21 --------->WOX13(1)--------->MYB46(3)       --------->ARR11(3)----------->HVH21    <---------ANAC58--   tagcaatcgattcgagatacaacagacaagatttgtaaacgatgaagatacctgtagatgaaggttgacggagatgcggcgataagcgtgagaggcaaaa  1029100                                                                                                    -                                                                                             --------                                                                                           <---------ZAT14                                                                                     --------->GLK1(2)                              <---------GLK1(1)                                   ------->GAMYB<-----               --------->ANAC58          <-----------TBP                         ----------------->AG >GT1          --------->ANAC58   <----------DOF2     <----------DOF2          --------->MYB52(1)   < ------->TOE2(3)              --------->GLK1(1)     --------->At4g35610   ------------>CBF --------->ZAT14 ------->TOE1(3)    *TSS--------->MYB52(1)<---------AHL20(2) --------->MYB59  --------->MYB46(3)  <--   accctaattttacagagacgaaagaataagggatttctttgcattttataggcctgcttaatttcggtactcggttttcaataaccgaatcagttcagtt  1029200                                           <---------MYB59                                          -------->ZAP1                                       --------->WRKY12                              <---------ICU4  <---------ARR14(2)                              --------->ATHB51<---------ARR11(1)                              <---------AHL20(2)                              --------->AHL20(2)      <----------DOF2                              <--------ATHB1  --------->GLK1(2) <---------AHL20(2)          <---------ATHB51 --------->ARR14(2) -------->AHL20(2)           <---------ATHB12<---------ARR14(1)                 --------->TOE2(3) --->GT1              <---------DEAR3(2)<---------WRKY18(1)         <-----------GT1     <-----------GT1 ----MYB52(1)      <---------ZAT2      ----------->HVH21       --------->AHL20(2)     <---------AHL20(2) ---------AHL20(2) --------->ZAT2      --------->WRKY38(1)     <---------AHL20(2)     --------->AHL20(2) -------YAB1     <-----------RAV1(2)  <---------WOX13(1)   <---------YAB1       --------->YAB1   <---   attttaattttgttttcgcccagccggttcaataatttggattgaccgaatccatgcttttatgtttaatttacaaatccaagcttaatttatcaatttt  1029300                                               <---------ANAC58                                               <---------ANAC46                                        <---------TOE2(3)                                       <---------DOF5.7(2)                    <<<<<<<<<TBF1      ---------->DOF2                 <<<<<<<<<TBF1       --------->DOF5.7(2)                                            -            <---------ANAC58        --------->TOE1(3)       <----------DOF2                     <----            <---------ANAC58        --------->TOE2(3)    <---------AHL20(2)<----------DOF2  <--------       --------->ATHB12           ---------->ID1     <------------------------ANAC81        <-------- ---------------------ANAC81<---------AHL20(2) <---------ANAC58        <<<<<<<<<<GT-3b     --------->ANAC46   gtatttgtttcattgcttcttcttcttcatttttttttcgttaaagatggcgttttcatttactttggtttatttttctttggtttcaattacactttac  1029400     <---------AHL20(2)                                                             <---------YAB1     --------->AHL20(2)--------->AHL20(2)                                         --------->YAB1    --------->AHL20(2) <---------AHL20(2)                               <---------AHL20(2) <---------AHL20(2)<---------AHL20(2)                                   --------->AHL20(2) -------->AHL20(2)--------->AHL20(2)                                    <---------AHL20(1) -----YAB1        <---------AHL20(2)                                <---------AHL20(2)       -------- -DAG2--------->WOX13(1)  <---------TOE2(3)                         --------->AHL20(2)  ----------->GT1 --DOF2          --------->YAB1                             <----------ID1       <---------YAB1<-----   gataaaattaatcactgaattttaatttaagaaaaacaagttgaatttttggaataacaaaaaaaacaaattaaaaaatttgtatgataaatgtaaaaag  1029500                           --------->YAB1                          <<<<<<<<<ARR2                      --------->TGA1a                        --------->WOX13(1)                   <---------O2                     --------->YAB1                          --------->ANAC46              <---------AHL20(2)                  --------->TOE2(3)                          --------->O2                  --------->AHL20(2)                 --------->ATHB12            --------->GLK1(2)                 <---------YAB1      <-                 <--------HAHB4              <---------ARR14(2)              <-----------GT1       --                 <---------ICU4              --------->ARR14(2)             <---------AHL20(2) ------                 -------->ATHB1             <---------GLK1(2)<---------TGA1a--------->AHL20(2)<------ -->DOF2         --------->YAB1----------->HVH21             --------->bZIP60(1)       <---------ATHB12 -----ID1       --------->ICU4 ----------->TGA1 <---------YAB1  <---------ANAC46  >>>>>>>>>>>>>>>>>LFY   acaaattgaatttttagaatcattaacaatcaaatgacgagatttagaatctgattagttctcacgtcgtattctaaatttatcatccaatgttttatta  1029600  Previous    Next  AGI:  At5g03850.1    Description:  40S ribosomal protein S28 (RPS28B). Identical to 40S ribosomal protein S28-1 (RPS28B) [Arabidopsis Thaliana] (GB:Q9SR73); similar to 40S ribosomal protein S28 (RPS28A) [Arabidopsis thaliana] (TAIR:AT3G10090.1); similar to unknown [Populus trichocarpa] (GB:ABK92734.1); contains InterPro domain Ribosomal protein S28e; (InterPro:IPR000289); contains InterPro domain Nucleic acid-binding, OB-fold (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold-like (InterPro:IPR016027) Range:  from: 1028339    to: 1029120    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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