Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                              --------->ANAC55(2)          --------->ANAC58                 --------->MYB59          --------->AtLEC2                 <---------TOE2(3)                         --------->ZAT14   ---------->DOF2                    --------->ATHB51                              <---------DAG2 -------->GT1                         --------->AHL20(2)             --------->TOE1(3)           ---- ----->DOF2    --------->ICU4        --------->ICU4     <---------AHL20(2)          <----------DOF2 ->LBD16  --------->ANAC58       ----------->GT1    ------>ZmHOX2a(1)--------->TOE2(3)          ----- >RAP2.6(2)  ---------->DOF2  ---------->DOF2      --------->TOE2(3)----------->RAV1(2)       -------   aagaaaaaagacatgcaaagatgaagaatgaagaaaggaataatttaggtattcctaagtaatttctctaacctgaatagattccactttagtcgataaa  1010100                                                        --------->ARR14(2)                                                        <---------ARR14(2)                                                       --------->ATERF1(1)                                                       <------NtERF2                                                      --------->LBD16                                                     --------->ETT(1)                                                     <---------ANAC46                                                    --------->ATERF1(1)                                                    <---------LBD16                                                    <------NtERF2                                                   ------>NtERF2                                                 <-------PIF5                                                 ------->PIF5                                                 --------->ATERF1(1)                                                <---------ATERF1(1)                                                <---------DEAR3(2)                                                <---------DEAR4(2)                                               --------->DEAR3(1)                                               <---------DEAR3(1)                                              --------->ATERF1(1)                                             <---------RRTF1(1)                                             <---------ATERF1(1)                                             ------>NtERF2<------NtERF2                               --------->At4g35610--------->ALFIN1                               <---------At4g35610----------->HVH21                             <--------P      <---------ERF1 --------->LBD16                            <---------MYB52(1)<------NtERF2<---------ANAC46                      <---------GLK1(1)      <---------RAP2.3(1)                     --------->ARR11(3)     <---------RRTF1(2)                     --------->ARR14(2)     <---------RRTF1(3)       <------NtERF2 <-----------ARR10      <---------DEAR3(1)       --------->MYB52(1)      ------>NtERF2  <---------ARR14(2)     <---------RAP2.3(2)     <---------ARR14(2)     --------->ATERF1(2)   --------->LBD16  <---------RAP2.3(3)     --------->ARR14(2)            <--     <---------ATERF1(2) <---------LBD16   --------->ATERF1(1)<---------ETT(2)    --------->At4g35610 ----->YAB1          <---------ARR11(3)   <---------ATERF1(1) --------->ETT(2)    <---------At4g35610 ---->ICU4         <---------HSFC1(2)    --------->ALFIN1------>NtERF2         <------ZmHOX2a(1)  --- --->DOF2          --------->HSFC1(2)<------ZmHOX2a(1)<---------ATERF1(1)   <------ZmHOX2a(1)     ---   gatgatgctggcaacgagggaagtatctccggtagcagaggagatggcgccggtgccggagccgtagacagaaacggaggaggaagatgagaagtagtag  1010200                                                                                        ---------->DOF2                                                                                 <---------YAB1                                                                               --------------->AGL15                                                   --------->ANAC58           ----------------->AGL2       ----------->GT1                             --------->ANAC58           ----------------->AGL3 -------ZAT14               <----------DOF2   ---------->DOF2               <---------ARR14(2) ------>ZAT18            ------->TEIL   <---------ICU4                      --------->ARR14(2) ------>ZAT14 ---------->DOF2    <------ZmHOX2a(1) --------->ANAC46        <------ZmHOX2a(1)   tggacagagaggttaataaagaagttgaatctttaggaccaatatttacaaagacgaaaccagaaatgacaacaagaggaaccatgaatagaaagagttt  1010300                   <------ZmHOX2a(1)                                  <---------ARR11(3)                 <---------TOE2(3)                                    --------->ARR11(3)             <-------GAMYB                                   --------->At4g35610         --------->bZIP60(1)                                 <---------At4g35610         --------->O2                             XXXXXXXXXXXXXXXXXXXX>MIR774B*                 =====         <---------O2                 <-----------GT1 <---------ARR11(3)                        -----         <---------bZIP60(1)<---------RAP2.6(3)  <---------ATHB12  <---------TOE1(2)--------->AHL20(2)      --------->ANAC46  --------->AtLEC2--------->ZAT6--------->ARR11(3)------>ZmHOX2a(2)   <--------   agttgaatacgacgtcgttgaggaacatgcagacatgtttttacacttcccatcaacatcttcatctcccatgatctctctctctattaattctctttct  1010400                                                                                                   <-             ---------->DOF2                                                         <----------DOF2          --------->YAB1                                                            --------->TOE2(3)   ----------->GT1        <------ZmHOX2a(1)                     <----------DOF2     <---------DAG2<-- ===================================================================================================MADS_MADS ---------->AGL15---------->DOF2          --------->YAB1        <---------DAG2      --------------->AGL15 --DOF2   --------->AHL20(2)   <----------ID1       ---------->DOF2     *TSS     <-----------GT1  <--   ctgagaagaaaattataaagaaagaagaggaagaagacgaagaatcaaaactaataaagaagagagcttttttgtttttatttcaaccttttttagtttt  1010500                                                                                          <-------PIF5                                                                                  <-----------HVH21                                                                                 --------->ANAC46                                                                                 <---------O2                                                                                 --------->O2                                                                          --------->At4g35610                                                                          <---------At4g35610                                                                        <--------P<-----------TGA1             --------->At4g35610              =============================================bZIP_DOF           <------ZmHOX2a(1)                  ---------->DOF2         <---------MYB46(3)  ------->PIF5     <----------DOF2            ---------->DOF2             <------MYB46(1)      ==================== ---------DOF2                <---------AHL20(2)            <------MYB83===================MYC_MYB <- -------ANAC58               --------->AHL20(2)   --------->YAB1 --------->ICU4  --------->bZIP60(2) -------ANAC58  --------->At4g35610   ----------->GT1       ----------->GT1      --------->TGA1a   <-   gctttcggttttaggagcagaagaagagaaatttaaaagaaggtgaatgaaagaataacatttggtaataagtggttgctccctcgtcacctcgtgccaa  1010600                                   --------->AtLEC2                                   --------->ANAC58                                               <--     <----------DOF2               --------->ANAC58             --------->ANAC58                 ---- ===============bZIP_DOF          <-------MYC3                  --------->ANAC58             -------- ----------HVH21                  ------->MYC3                  --------->ANAC46            <-------- ----------TGA1            <----------DOF2<----------DOF2     <---------ALFIN1 <-----------GT1-------   gcgtcatctttctttccactctctcttctcttttcacatgcaaactttttatttctatcaatttccaccccaaacgttttatttctatctatttctaccc  1010700        ------>MYB83        ------>MYB46(1)      --------->AtMYB61     <---------MYB55(2)     <---------ATHB12     --------->MYB46(3)    --------->ANAC58    ------>MYB46(1)                       ----------->GT1    ------>MYB83                     <---------AHL20(2)    --------->ANAC58             --------->ICU4 ---------HVH21                  <---------AHL20(2) ----->ANAC46                 <---------ZAT6 >P -------->P             --------->HSFB2a(2)                 <---------ANAC58 <---------AHL20(2) ---GT1--------->WOX13(1)  <---------HSFB2a(2)                 <---------ANAC58<---------AHL20(2)---- -->ANAC46      --------->AtMYB61--------->AHL20(2)   <----------DOF2      <----------DOF2    <------   cgtcccaaccaatccaaaccaaaactcttctagtattaattaagttgttatatcaactttgctatgcgtttgcaatgcttttttatttgaaactttgaat  1010800                                                                                                    -                                                                                                   --                                                                                                   <-                                                                                                  <--                                                                                                  <--                                                                                                  <--                                                                                                  ---                                                    ---------->DOF2                               ---                                             ------->TEIL                                 <----------      ------->TEIL                      --------->MYB52(1)                            <---------DEAR3(2) ----->ZAT18                          <---------MYB52(2)    <---------ICU4   --------->ARR11(3)  <--- ---AtLEC2  --------->YAB1       <-----------GT1  <---------YAB1         --------->MYB52(1) ---------   ggactatgtagctatcagaaccaaaactctcgtattaacaacttacgaatttataaaagaaaacattacaaaaactaagggtcttggtcgattcaccaca  1010900 ----->ZmHOX2a(2) ------->GLK1(1) -----ZmHOX2a(2) -------AGP1 -------ARR11(3) -------ARR14(2)                             <---------GLK1(2) ------>ARR11(3)                             --------->ARR14(2) ------>ARR14(2)                <---------YAB1--------->GLK1(2)                ------->GAMYB   <----- -GT1                         --------->YAB1 <---------ARR14(2)              --------->At4g35610   <- ------CCA1(2)               --------->ICU4 <------ZmHOX2a(1)         <-----------GT1          ------ >ANAC46            --------->AtLEC2  ----------->RAV1(2)         <----------DOF2     <---------YAB1   gatctctacaagaacacttgccattcacaaaatgatgaaaccctgaggaatctctcaaaactatctctctttttaccacaactgaaatatacttgaagaa  1011000  Previous    Next  AGI:  At5g03795.1    Description:  oxidoreductase. similar to exostosin family protein [Arabidopsis thaliana] (TAIR:AT3G07620.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16010.1); contains InterPro domain Exostosin-like; (InterPro:IPR004263); contains InterPro domain Rieske [2Fe-2S] region; (InterPro:IPR005806) Range:  from: 1007389    to: 1010472    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g03800.1    Description:  EMB175 (EMBRYO DEFECTIVE 175); catalytic. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G16860.1); similar to hypothetical protein OsJ_022333 [Oryza sativa (japonica cultivar-group)] (GB:EAZ38850.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16012.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN82063.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 1010779    to: 1013585    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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