Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                  xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                  xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                  xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                  xxxxxxxxxxxxxxxx>smallRNA(s)                                    <---------AHL20(2)            xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                    <---------YAB1                xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                   --------->AHL20(1)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                   <---------AHL20(1)             *TSS                                   --------->AHL20(2)             xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                        <---------ANAC58                     --------->ANAC58              --------->ANAC46----------->TBP            --------->YAB1       <---------ZAT2   <---------ANAC46              <---------ICU4 xxxxxxxxxxxxxxxxxx>smallRNA(fl3)       --------->At4g35610    <---------AHL20(2)      --------->YAB1 xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       <---------At4g35610 <---------ARR14(2)       --------->AHL20(2) ---GAMYB     --------->REM1(1)   --------->YAB1    --------->AHL20(1) ----------------->AGL1      -- ----->GT1   <---------ZAT14  --------->AHL20(2)   --------->YAB1 xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ----MYB46(3)--------->ZAT14----------->TBP   ----------->GT1--------->ANAC46                 <xxxxxx -DOF2------->TEIL      <---------ANAC58  <------ZmHOX2a(1)  --------->ANAC58 <---------MYB46(3)   <-   ttaatatgcagctactacaccagtttgcgtatataaatataataggaagagaaaaataataacaagcaggtttgcccgagtggttaagggggaagactta  984400                        <---------PCF2                        xxxxxxxxxxxxxxxx>smallRNA(s)                       <---------DEAR3(2)                      <---------TOE1(2)                    <-------PIF5                    <-------MYC2                    ------->MYC2                    ------->MYC3                    ------->PIF5xxxxxxxxxxxxxxxx>smallRNA(le3)                    <-------MYC3xxxxxxxxxxxxxxxx>smallRNA(s)                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   <---------ANAC58                   <---------ANAC58                 <---------ANAC58                --------->ZAT18--------->ANAC58                <---------ZAT18--------->ANAC58                xxxxxxxxxxxxxxxx>smallRNA(s)             xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)            xxxxxxxxxxxxxxxx>smallRNA(s)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)           xxxxxxxxxxxxxxxx>smallRNA(se3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------ARR14(2)    --------->AHL20(2)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     --------->ARR14(2)    <---------AHL20(2)        <------      <---------ZAT18--------->ALFIN1        <---------GLK1(1)     --------->AHL20(2)         <------ ------->ARR11(3)<---------ANAC46   <---------ALFIN1            <---------YAB1             <---------ALFIN1 xxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxx>smallRNA(s)      --------->AHL20(2) <---------ANAC58 --------ARR11(3)<---------ANAC58 <---------ALFIN1         ----------->GT1        <---------ANAC58<--   agttcttctgcacataagtgcgcgtgggttcgaaccccacagcctgcatttcccctctattttgttaaaattaataaacttgttgtgttccttccacttt  984500                                                                                 <------------CBF                                                                                --------->ATHB12                                                                               <---------YAB1                                                                            --------->ZAT6                                                                          --------->YAB1                                                             --------->ANAC46--------->YAB1 ----DOF2                              <---------YAB1   ------>MYB83     <---------YAB1 ---DAG2                     <---------ANAC46           ------>MYB46(1)--------->YAB1 <<<<<<<<<MYB2 -------At4g35610        <---------At4g35610       <-----------GT1  --------->YAB1<---------WOX13(1)   tgctgtcttccaaaggtttccaacttccgcttcgtatttctctgattgtgaattaaccaaatcacaccaagaatcataatactaattggttttcatgtag  984600                                             --------->ICU4                                            --------->ANAC58                                            --------->ANAC58                                        --------->ANAC46                             <----------DOF2                                        --------->ANAC58                        --------->At4g35610           <---------RAP2.6(2)          --------->ANAC58                        <---------At4g35610          <---------LBD16            <---------ARR14(2)                  <---------DAG2       -------         <-----------GT1             --------->ARR14(2)            <---------At4g35610        -------    <----------DOF2             ---------->DOF2          <----------DOF2 <----------DOF2    <--------   agtttccttttttgcggttttcatgttgaagaaaaaaaggaaacgcaagtattagttttcttttaatcgagcttactttttaagctgctttgctctttat  984700                                                                     <---------DEAR3(1)                                                                  <---------ANAC58                                                                  <---------ANAC46                                                                  <---------ANAC58                                                              <----------DOF2                                                          --------->ANAC46    <---------WOX13(1)                              --------->DEAR3(1)   <------------CBF                                <---------At4g35610 ---->TBP                                    ---------->DOF2 <---------ANAC58           ------------>CBF -->AHL20(2)                              --------->TOE2(3)  <---------ANAC58          --------->YAB1 --DOF2     <---------MYB52(1)            <----------DOF2 <---------DEAR3(1)     --------->ETT(1)   atacagattgctctgttttgtaagaagctaagttttgggttttgccttaatgcagcgactacggcgtttcgtctgtggtaatgtcggaataacaatggaa  984800                           --------->ANAC58                           <----------ID1                           --------->ANAC46                                --------->ANAC46                           --------->ANAC58                      <---------STY1(1)                  <------ZmHOX2a(1)                              --------->STY1(1)        ------->TEIL  >>>>>>>>>TBF1                 --------->ALFIN1     <-----------GT1      -------   gtattcgatgaacctgatgaggaagaagaacgccaaattagccaatacatcgatgtggtagactcacctagggtttcacagaacgagagtgagtatcaaa  984900                                                                                                  <--                                                                                                 <---                                                           --------->ICU4                        <---                                                         -------->ATHB1                          <---                                                         <--------HAHB4                         <----                                                         --------->YAB1                        ------                                                         <---------ICU4                       <------                                                        --------->ICU4                        -------                                                  ---------->DOF2                           ------->GAMYB                       <---------YAB1          <------ZmHOX2a(1)                          ------>MYB83                 <---------MYB46(3)            ==============================HOX2a_HOX2a  ------>MYB46(1)          --------->DAG2                    =================================HOX2a_HOX2a--------->AtMYB61     --------->At4g35610                    <------ZmHOX2a(1)         ------>ZmHOX2a(2)--------->DEAR3(2)     <---------At4g35610            <------ZmHOX2a(1)  --------->GLK1(2) <---------AtLEC2--------->MYB52(1) --->DOF2---------->DOF2<---------ICU4   <-----------RAV1(2)  <---------YAB1           --------->MYB46(3)   gaaggtcatcagaaagtgtttgttcatcatcgtcttcaggattgcaggaggataaagaatcattatgttcgatctgtatggaagtttggaccaacggtgg  985000                         <---------ANAC58 -----GAMYB       ------->TEIL ------ANAC58    <---------ALFIN1                  --------->YAB1 ------ANAC58----------->RAV1(2)       ------>ZmHOX2a(2) ------ANAC46--------->ZAT2           --------->GLK1(1) --NtERF2    <---------ZAT2           <------ZmHOX2a(2) >NtERF2 -------->P      <---------ANAC58   --------->MYB46(3) ---DEAR3(1) --------->At4g35610     <---------ARR11(3)       <-----------RAV1(1) -->ALFIN1   <---------At4g35610     --------->ARR11(3) --------->ICU4 <---------ZAT14         ------   cgttgttcgtctaccagctgcaccttgtcttgttcttgggatctcaacaactatcacaatgtttatgctggactacagaatggaatggttttagtatttg  985100                                     <---------bZIP60(1)                                     --------->ANAC58                                     <---------ANAC55(2)                                     --------->bZIP60(1)                                     ----------->GT1                                     --------->ANAC46                                     <---------ANAC58                                     --------->TGA1a                                     <---------O2                                     --------->O2                                     <---------ANAC58                                     --------->ANAC55(2)                                     <---------TGA2(1)                                     --------->ANAC58                                     <---------TGA1a                                     --------->TGA2(1)                                <---------At4g35610                               <---------MYB46(3)                             <---------MYB52(1)                            ===================MYC_MYB                            <-------GAMYB                           <---------ANAC58 --------->ANAC46                           <---------ANAC58 --------->ANAC58                   <----------DOF2 <---------TGA2(2)                   ============================bZIP_DOF                --------->ARR11(3)----------->HVH21   <-----------HVH21       <---------ANAC46 --------->ANAC58                <---------YAB1 <-------TEIL   <---------ARR11(3)----------->TGA1     <-------TEIL    <---------GLK1(1)         ---- ----->HVH21   <------ZmHOX2a(1)--------->At4g35610--------->MYB59     --------->GLK1(1)         ----   acatgcgtcaaaacagaggacctttggtttcgttggctgacgtaacaagcaattcggttcatattgtagatggatttcatgtttgtctcaagagaagagg  985200                                           --------->At4g35610                                 --------->ANAC58                                     <------ZmHOX2a(1)                                 --------->ANAC58                            <----------DOF2      <---------YAB1             --------->ANAC46                    <---------MYB46(3)   ----------- <---------MYB46(3)          --------->ANAC46                  --------->MYB52(1) <---------ANAC58 ------->HVH21               --------->ANAC58                  --------->ARR14(2) <---------ANAC58 <- ----->ALFIN1                --------->ANAC58             ----------------->AG    <---------ANAC46 <-   tgatggttcttattctcagaaacagtcatccacacaagctatagtagatgccatcagtttgccaagaacggcgattagactttggcgaggaaatgacaca  985300  Previous    Next  AGI:  At5g03745.1    Description:  pre-tRNA. tRNA-Leu (anticodon: TAA) Range:  from: 984366    to: 984448    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g03750.1    Description:  similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G03450.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN68707.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63019.1); contains domain PTHR16047:SF7 (PTHR16047:SF7); contains domain PTHR16047 (PTHR16047) Range:  from: 984795    to: 985496    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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