Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                      <---------ANAC58                                                    <---------ANAC58       <---------ARR14(2)                           <---------ANAC46       --------->ARR14(2)                       <---------At4g35610   <---------LBD16                              --------->ZAT2                                      < -------DOF2                 ---------->DOF2    <---------ZAT2                                      - ---->TOE1(3)             --------->ANAC58      --------->At4g35610                         <-------- ---->TOE2(3)             --------->ANAC58   <---------ZAT14             <---------ICU4     --------- ->ARR14(2)               --------->ANAC46   --------->ZAT14            --------->ICU4      <-------- --GLK1(2)       <---------ZAT14             <---------ZAT18      --------->At4g35610      --------->CCA1(1) --ARR14(2)      --------->ZAT14            --------->ALFIN1 >>>>>>>>>TBF1 <---------YAB1--------->YAB1   tttacttcggaaatgggattgcagtctcacacaaaggccaaacacagtgcagctgcttgagaagaagaagcagcatgatgactactctctataatatcta  984000      <----------DOF2   <---------ARR11(3)                   <---------ANAC58   <<<<<<<ZML2                          <---------ANAC58                                      <------ ---------HSFB2a(2)                     <---------ANAC46                                      <------ -------->HSFB2a(2)                  --------->TOE1(2)                                     <--------- ---ARR10                      <---------HSFB2a(2)              <----------DOF2       ------>ZmHOX2a(1) >ARR11(3)                     --------->HSFB2a(2)          <------MYB83       --------->ARR14(2) --- -ARR11(3)     <----------DOF2<---------LBD16--------->ZAT18<------MYB46(1)    <---------ARR14(2)<---   ctctagaactttgatgtcttttggtacttaaatctggaacttgcgagtgagccagttttagttggtcttttttttcaggcatttcttcctgtttaacttt  984100                                                                                     <-----------ARR10         <---------At4g35610                                                         <---------ARR14(2)    <---------AtMYB61                                                                --------->ARR14(2) ----DOF2<---------ZAT2                                                              <---------ARR11(3) ---DAG2 --------->At4g35610                                                         --------->GLK1(2) --GT1 <--------P                          <---------ZAT6                            --------->ARR11(3) ------->ID1                           <---------ZAT14       <----------DOF2    <---------ZAT6 --------------AGL1        --------->TOE2(3)     ----------->GT1        <----------DOF2            --   atcgttttggtagctgaaactgtgctaaacctttgtttgtgtttagtggtatggatattaagtctttttgtagacttttctagtgaaaatctacatttga  984200                                                                                <---------ARR11(3)                                                                             <---------TOE1(3) <-----                                                                      --------->LBD16      <---------                                                                     --------->ANAC58     <---------ANAC58                                                                     --------->ANAC58     <---------ANAC46                                                     --------->YAB1  --------->ANAC46     <---------ANAC58                       <---------WOX13(1)     <----------DOF2     ------->TEIL  --------->ARR11(3)>>>                     --------->ATHB12    <-----------HVH21   --------->MYB52(1)<------ZmHOX2a(1)<---- ------->GLK1(2)<-------TEIL          <---------AtLEC2   --------->GLK1(2)   <---------TOE2(3) ------   aattctctgtccaaaacatacattgattgaagattagttagcatgtcactttgtaacataatctaatggacccgaaattaaggatttttagggcttgtgg  984300                                                                  xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                  xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                  xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                  xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                  xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                    <---------AHL20(2)            *TSS                                    <---------YAB1                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                   <---------AHL20(1)             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                   --------->AHL20(2)             xxxxxxxxxxxxxxxx>smallRNA(s)                                   --------->AHL20(1)             xxxxxxxxxxxxxxxxxx>smallRNA(se3)                        <---------ANAC46                     --------->ANAC46       --------->At4g35610    <---------AHL20(2)         --------->YAB1       <---------ZAT2   <---------ANAC58              --------->YAB1 xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       <---------At4g35610 <---------ARR14(2)         <---------ICU4 xxxxxxxxxxxxxxxxxx>smallRNA(fl3) ----MYB46(3) --------->ANAC46--------->AHL20(2)    --------->AHL20(2) -DOF2------->TEIL      <---------ANAC58  <------ZmHOX2a(1)  --------->ANAC58                      <- >>>>>>GT-1   --------->REM1(1)   --------->YAB1    --------->AHL20(1) ----------------->AGL1 <xxxxxx ---GAMYB    --------->ZAT14  ----------->TBP      --------->YAB1 xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ----->GT1   <---------ZAT14----------->TBP   ----------->GT1--------->ANAC58 <---------MYB46(3)   --   ttaatatgcagctactacaccagtttgcgtatataaatataataggaagagaaaaataataacaagcaggtttgcccgagtggttaagggggaagactta  984400                        <---------PCF2                        xxxxxxxxxxxxxxxx>smallRNA(s)                       <---------DEAR3(2)                      <---------TOE1(2)                    <-------PIF5                    <-------MYC2                    ------->MYC3                    <-------MYC3                    ------->MYC2xxxxxxxxxxxxxxxx>smallRNA(le3)                    ------->PIF5xxxxxxxxxxxxxxxx>smallRNA(s)                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   <---------ANAC58                   <---------ANAC58                 <---------ANAC58                --------->ZAT18--------->ANAC58                xxxxxxxxxxxxxxxx>smallRNA(s)                <---------ZAT18--------->ANAC58             xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)             xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            xxxxxxxxxxxxxxxx>smallRNA(s)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)           xxxxxxxxxxxxxxxx>smallRNA(se3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)  --------->ARR14(2)    --------->AHL20(2)      <---------ZAT18--------->ALFIN1         <---------ARR14(2)    <---------AHL20(2)        <------      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    <---------GLK1(1)     --------->AHL20(2)         <------ --------ARR11(3)<---------ANAC46   <---------ALFIN1            <---------YAB1             <---------ALFIN1 xxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxx>smallRNA(s)      --------->AHL20(2) <---------ANAC58 ------->ARR11(3)<---------ANAC58 <---------ALFIN1         ----------->GT1        <---------ANAC58<--   agttcttctgcacataagtgcgcgtgggttcgaaccccacagcctgcatttcccctctattttgttaaaattaataaacttgttgtgttccttccacttt  984500                                                                                 <------------CBF                                                                                --------->ATHB12                                                                               <---------YAB1                                                                            --------->ZAT6                                                                          --------->YAB1                                                             --------->ANAC46--------->YAB1 ----DOF2                              <---------YAB1   ------>MYB83     <---------YAB1 ---DAG2                     <---------ANAC46           ------>MYB46(1)--------->YAB1 <<<<<<<<<MYB2 -------At4g35610        <---------At4g35610       <-----------GT1  --------->YAB1<---------WOX13(1)   tgctgtcttccaaaggtttccaacttccgcttcgtatttctctgattgtgaattaaccaaatcacaccaagaatcataatactaattggttttcatgtag  984600                                             --------->ICU4                                            --------->ANAC58                                            --------->ANAC58                                        --------->ANAC46                             <----------DOF2                                        --------->ANAC58                        <---------At4g35610           <---------RAP2.6(2)          --------->ANAC58                        --------->At4g35610          <---------LBD16            --------->ARR14(2)                  <----------DOF2      -------         <-----------GT1             <---------ARR14(2)            <---------At4g35610        -------    <----------DOF2             ---------->DOF2          <----------DOF2 <---------DAG2     <--------   agtttccttttttgcggttttcatgttgaagaaaaaaaggaaacgcaagtattagttttcttttaatcgagcttactttttaagctgctttgctctttat  984700                                                                     <---------DEAR3(1)                                                                  <---------ANAC58                                                                  <---------ANAC58                                                                  <---------ANAC46                                                              <----------DOF2                                                          --------->ANAC46    <---------WOX13(1)                              --------->DEAR3(1)   <------------CBF                                <---------At4g35610 -->AHL20(2)                                 ---------->DOF2 <---------ANAC58           ------------>CBF ---->TBP                                 --------->TOE2(3)  <---------ANAC58          --------->YAB1 --DOF2     <---------MYB52(1)            <----------DOF2 <---------DEAR3(1)     --------->ETT(1)   atacagattgctctgttttgtaagaagctaagttttgggttttgccttaatgcagcgactacggcgtttcgtctgtggtaatgtcggaataacaatggaa  984800                           <----------ID1                           --------->ANAC58                           --------->ANAC58                                --------->ANAC46                           --------->ANAC46                      <---------STY1(1)                  <------ZmHOX2a(1)                              --------->STY1(1)        ------->TEIL  >>>>>>>>>TBF1                 --------->ALFIN1     <-----------GT1      -------   gtattcgatgaacctgatgaggaagaagaacgccaaattagccaatacatcgatgtggtagactcacctagggtttcacagaacgagagtgagtatcaaa  984900  Previous    Next  AGI:  At5g03740.1    Description:  HD2C (HISTONE DEACETYLASE 2C); nucleic acid binding / zinc ion binding. Identical to Histone deacetylase HDT3 (HDT3) [Arabidopsis Thaliana] (GB:Q9LZR5;GB:Q9M4T4); similar to HD2A (HISTONE DEACETYLASE 2A), nucleic acid binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G44750.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15973.1); contains InterPro domain Zinc finger, C2H2-like; (InterPro:IPR015880); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) Range:  from: 981875    to: 984199    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g03745.1    Description:  pre-tRNA. tRNA-Leu (anticodon: TAA) Range:  from: 984366    to: 984448    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g03750.1    Description:  similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G03450.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN68707.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63019.1); contains domain PTHR16047:SF7 (PTHR16047:SF7); contains domain PTHR16047 (PTHR16047) Range:  from: 984795    to: 985496    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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