Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                      <---------AHL20(2)                                                    -------->HAHB4                                                    <---------ICU4                                                   --------->ICU4                                                   <---------ATHB51                                                   <---------YAB1                                                <---------AHL20(2)                                               <---------AHL20(2)                                               --------->AHL20(2)                                              --------->YAB1                                           --------->YAB1     <---------ZAT6                        <---------ICU4 ------->HAHB4                             <--------ATHB1 -------->YAB1                             <---------AHL20(2) --------YAB1                              --------->AHL20(2) ----->YAB1------>ZmHOX2a(1)               <---------AHL20(1) -----AHL20(2)                            --------->ICU4 -----YAB1--------->ANAC55(2)           --------->YAB1              --------------->AtSPL3      <---- --->AHL20(1)                          --------->AHL20(2)         ------>NtERF2                 ----- ----AHL20(1)                          <---------AHL20(2)        ----------->HVH21        <---------- --->AHL20(2)                         --------->AHL20(2)        <------NtERF2       --------->YAB1 ----AHL20(2)                 --------->MYB46(3)<---------YAB1<---------LBD16      <---------YAB1 -->YAB1  --------->TOE2(3)   <---------MYB52(2)--------->AHL20(2)<---------PCF5 <-----------GT1<----   aataatagtgttccttaattctcactcgtgcaactatccatttaataattttaattattcgtagtcggggaccgtacttagttttatcatataaactctt  981500  --------->ARR14(2)  --------->ARR11(3)  <---------ARR14(2)                --------->AHL20(1)  <---------GLK1(2)                 --------->AHL20(2)                     --------->ALFIN1 -----ZAT14                         <---------AHL20(2)                    --------->LBD16 ---->ZAT14                        --------->AHL20(2) <-------TEIL       <---------ANAC58 -GT1                         ----------->GT1 <----------DOF2            <---------ANAC58  <------ZmHOX2a(1) -----REM1(2)         <----------DOF2   --------->AHL20(2)  <---------YAB1<---------LBD16<---------TOE2(3)   cacagattttgttaactggtttttctttggattagaaaaaaattaaaactttgcgatacattatgctcaatttatccgtgggacttattttgaggaatgg  981600                                                                                                  <<<                                                                                                -----                                                                                          ------>ZmHOX2a(2)                                                                      ----------->GT1    <------ZmHOX2a(2)                                      <-------MYC3                    <---------ZAT6     ============                                      ------->MYC3                 --------->DAG2       <---------ARR14(2)                                --------->ANAC46                  ---------->DOF2       --------->ARR14(2)                         --------->AHL20(1)               --------->WOX13(1)       <---------MYB52(1)            --------->ICU4      --------->PCF2          <---------MYB52(1)        <-------GAMYB -----   --------->ARR11(3)    --------->ARR11(3)            <-----------TGA1       ------------>MYB.PH3(1)   <---------ARR11(3)  ------->TEIL<---------ALFIN1    <-----------HVH21   ---------->DOF2===========   agatagatattgtcatgaagacatgaatatatagaccccacatgttgacgaaaactccgtcagtcaaataaagtgttaaaagtccgttacgatccgtcct  981700                                                                                                   --                                                                                                   <-                                                                                                   --                                                                                                   --           --------->DAG2                                                                 --------->CCA1(2)    <---------MYB52(1)                                                                   <---------ARR11(3)   --------->At5g28300                                                                   --------->ARR14(2)  ----------->GT1       ---------->DOF2      --------->MYB52(2)                   --------->MYB52(1)< <<<<GRF7 ---------->DOF2--------->DAG2    <---------MYB52(1)                     ---------->DOF2  -- ->ZmHOX2a(1)    <------NtERF2            --------->TOE1(3)                     <---------MYB52(2)--- ==HOX2a_HOX2a  <---------RAP2.6(3)       --------->TOE2(3)           <---------ICU4     --------->ARR11(3) ------>HVH21  ----------->GT1    <---------ANAC58                  --------->ARR11(3)   <---------ARR14(2) ==HOX2a_HOX2a --------->RAP2.6(2)<---------ANAC58<-----------RAV1(1) --------->YAB1   ----------->ARR10   gacaccgttaaaaaaagccgtcaaaataaagtatgggcttgaaacgttagttttgttgggctaattttaaaatcatggcccaactaaaggagatattcga  981800                  =======================HOX2a_HOX2a                 ========================HOX2a_HOX2a        --------->MYB52(1)       ----------->HVH21                              ----------->HVH21     <---------ANAC55(2)                              <---------ZAT18     --------->ANAC46  ---------->DOF2              --------->At4g35610 ------->WRKY12  <------ZmHOX2a(2)          <---------AHL20(1) --------ZAT14  <---------ARR14(2)          <---------AHL20(2)                          ---------->DOF2 ------->ZAT18  <---------ARR11(3)          --------->AHL20(1)                         ---------->DOF2 ------->WRKY38(1)------>ZmHOX2a(2)         --------->AHL20(2) <-----------GT1   --------->ANAC46 ---------PCF5  --------->ARR14(2)       --------->YAB1------>NtERF2             --------->ANAC58 ------->ZAT14  --------->ARR11(3)      --------->AHL20(2)    <-----------GT1    --------->ANAC58 ------>ALFIN1 <------ZmHOX2a(1)  ------>ZmHOX2a(1) <---------At4g35610    *TSS<---------ALFIN1   gtggaccgcgtaacagaggatccctaaaatcccttcctccgattaataaattccagcggacattttagccttctcacatcaacacgccctaaaaccgctc  981900                               --------->HSFC1(2)                               --------->HSFB2a(1)          <------NtERF2                               <---------HSFC1(2)          ------>NtERF2                               <---------HSFB2a(1)   ------->TEIL                             <<<<<<<ZML2          --------->ANAC58                          --------->HSFB2a(2)     --------->ANAC46      --------->ANAC46                          <---------HSFC1(1)      --------->ANAC58   <------ZmHOX2a(2)                   <---------GLK1(2)           ----------->HVH21    <---------ARR11(3)                  --------->At4g35610        ===============================HOX2a_HOX2a            --                  <---------At4g35610  =====================================HOX2a_HOX2a          <---                  <---------ZAT2       ------>ZmHOX2a(1)  --------->DEAR3(1)                   <-----        ------->TEIL      <---------HSFB2a(2)------>ZmHOX2a(1)      --------->ARR11(3)         ------   --------->CCA1(2)      --------->HSFC1(1)--------------------->WRI1  --------->ZAT6        <------   tcgagagacgaatcgctctcagcttcttctagaaccttctccttctccttcgacgcatcgtcgccttcaagatcacactacctcgcacaacaatggagtt  982000           --------->ARR11(3) ----------->GT1 <---------ANAC46 ------->LBD16              ------>ZmHOX2a(1)               ------>ZmHOX2a(1) ------LBD16        --------->YAB1                        <---------ANAC58 ----ARR14(2)    <---------CCA1(2)                        <---------ANAC58                      <---- --->ARR14(2)    ------>ZmHOX2a(1) <<<<<<<<<TBF1   <----------DOF2           <-----------GT1    <---- ---GLK1(1)<---------ARR11(3)   <<<<<<<<<TBF1  <---------ZAT18 <----------DOF2 <---------At4g35610   ctggggtaaaaaacatctcctatcttactccttcttcttcttcgttctctgcgcttcatttcctgcatttagtttttttttagcttctggtttcatcgct  982100                                                   --------->At4g35610                                                   <---------At4g35610                                        --------->HSFC1(2)  ---------->ID1                        --------->HSFB2a(1)                   --------->ARR14(2) <-----------GT1                        <---------HSFB2a(1)                   <---------ARR14(2) -----DAG2                              <---------HSFC1(2)    --------->CCA1(2)         --------->GLK1(2) ------DOF2          <-----------GT1  <---------GLK1(2)       --------->MYB52(1)   ----------->HVH21   ttttttcgttttgccatgtttttctactgttttttctatggaatcttctgtttagctaaacgagaaacgggaatagtgagtatatgtgacaatctagggt  982200                                                                                       <---------ARR14(2)                                                             <-----------GT1           --------->ARR14(2)                                    ---------->DOF2    <------MYB46(1)             <---------LBD16   <---------HSFB2a(1)  <---------LBD16                <------MYB83     <---------TOE2(3)  <---------   atggactgttcgtcttcgtagaaaattggggaaaactgaaaagttttctctctcgctaggttttaactccgatagaggtttcatttggggattttgttgc  982300                                                                          ------>ZmHOX2a(1)                                                                          --------->LBD16                                                                         --------->TOE1(2)                                                                        ------>ZmHOX2a(2)                                                                      --------->ARR14(2)                                                                      --------->AGP1                                                                      <---------ARR14(2)                                                                      <---------ARR11(3)                                                                      <---------GLK1(2)     ---------                                                             <-----------HVH21            <-------MYC2                                                            --------->bZIP60(2)           <-------MYC3                                                <---------ICU4        --------->ARR11(3)  ------->MYC3                                   --------->ALFIN1      --------->MYB46(3)               ------->MYC2                               <-----------RAV1(2)     --------->ANAC58 ----------->RAV1(2) <--------      --------->ATHB12   <---------ANAC58     <---------YAB1--------->ANAC46              <-------PIF5  <-----------GT1        <---------ANAC58     <---------TOE2(3)     ----------->ARR10     ------->PIF5 --RAV1(1)       <----------DOF2 <---------At4g35610   --------->ANAC58<------ZmHOX2a(2)<-------TEIL   agaattactgatttgtatgctttctatgcgtttgcaggtgttgaagttaagaatggcaaaccacttcacctagatcctgggctagacaggctcgtgcaca  982400  Previous    Next  AGI:  At5g03740.1    Description:  HD2C (HISTONE DEACETYLASE 2C); nucleic acid binding / zinc ion binding. Identical to Histone deacetylase HDT3 (HDT3) [Arabidopsis Thaliana] (GB:Q9LZR5;GB:Q9M4T4); similar to HD2A (HISTONE DEACETYLASE 2A), nucleic acid binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G44750.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15973.1); contains InterPro domain Zinc finger, C2H2-like; (InterPro:IPR015880); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) Range:  from: 981875    to: 984199    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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