Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        <------ZmHOX2a(2)                                     <---------ARR14(2)                                     --------->AGP1                                     --------->ARR11(3)                                     --------->ARR14(2)                                     <---------ARR11(3)                                     --------->ARR14(3)                                     <---------ARR14(3)             --------->AtLEC2                              ================HOX2a_HOX2a           --------->ANAC58                              ===============HOX2a_HOX2a            --------->ANAC46                              <------ZmHOX2a(1)              <---------At4g35610        ----------->RAV1(1)                         --------->YAB1------>ZmHOX2a(2)     --------->At4g35610       <---------ALFIN1                     --------------->AGL15       --------->ZAT2     --------->ANAC58  ------>MYB46(1)                     <---------------AGL15       <---------ZAT2----------->HVH21      -------->P                    ----------------->AGL2    ------->GAMYB  <---------ZAT2           ------>MYB83  -                    ----------------->AGL3   --------->ANAC46--------->ZAT2   <----------DOF2   <----                  <-----------GT1  ----------->ARR10        ------->TEIL--------->MYB52(1)   <-------   acaagttgaagaaaactattttaccaatagtaggagcaagatcttcaacggagctagaaatgaagctgacaagcaaactgcttttaccaacaccagaatc  887000            ------>ZmHOX2a(2)          <---------AGP1          --------->AGP1  ------>ZmHOX2a(2)          --------->ARR11(3)          <---------ARR11(3)             <-----------RAV1(2)       --------->TOE1(3)              <--          --------->ARR14(3)             --------->HSFB2a(2)       --------->TOE2(3)              ---          <---------ARR14(3)             <---------HSFB2a(2) --------->HSFB2a(2)         ------>ZmHOX2a(2)          --------->ARR14(2) --------->ARR14(2)              <---------HSFB2a(2)       <---------AGP1   --------->YAB1        <------ZmHOX2a(2)          ------>ZmHOX2a(2)                  <---------ARR14(2)  <---------ATHB12      <---------ARR14(2)         <------ZmHOX2a(2)                <---------HSFB2a(2)  --------->MYB46(3)    <---------ARR11(3)        <---------ARR14(2)                --------->HSFB2a(2) ------>MYB83           --------->ARR11(3)        --------->ARR11(3)     --------->GLK1(1)        --- ------>MYB46(1)---------->DOF2    <----------DOF2<---------ARR11(3)    <---------GLK1(2)============ -------->WOX13(1)      --------->ARR14(2)        --------->ARR14(2)    --------->ARR14(2)        <-- -------GT1<------ZmHOX2a(2) <---------ARR14(2)  --------->HSFB2a(1)    <---------ARR14(2)----------- --GLK1(2)<---------ARR14(2)<---------CCA1(2)    <---------HSFB2a(1)  ----------->ARR10--------->ARR14(2)   accaatcaacaagatcttaaaagacagatcgtatccactttgcccagaagaagatcccattttctaaaacctcagatttgctgtttctcgatctgtaatt  887100                                                                                                    -                                                                                                 ----                                                                                                 ----                               ------>MYB46(1)                                                  -----                               ------>MYB83                                                     <----                             --------->AtMYB61                                                -------                             <---------MYB111(2)                                              <------              --------->ARR14(2)--------->MYB46(3)                                         --------->YAB1              <---------ARR14(2)<---------MYB111(1)                                       <---------YAB1     ====================HOX2a_HOX2a                                                    -------->HAHB4    --------->ARR11(3)       <---------MYB111(1)                                        <---------ICU4    <---------ARR11(3)       --------->MYB46(3)                                         --------->YAB1 -------HSFB2a(2)            <---------MYB55(2)                                        <---------YAB1 ------>HSFB2a(2)         ------->GAMYB   --------->ANAC58                   ---------->DOF2 -------- ------>HSFC1(1)         <---------MYB55(2)                            ------->TEIL    <---------ATHB12 ========================HOX2a_HOX2a      --------->ANAC58          <---------YAB1     --------->ICU4 -------HSFC1(1)  ------>ZmHOX2a(1)     ---------->DOF2         --------->YAB1       --------->YAB1 < >GT1<------ZmHOX2a(2)   --------->MYB46(3)      <----------DOF2--------->AHL20(2)  --------->ICU4 --   ctagaagatcaaatcaaatcctacttaaccaccaactactacaaaagcaaacttttagataaacaataatatgaatctatgaagcagtaatgatgataat  887200         -------->HAHB4      <---------ICU4      --------->YAB1     --------->ICU4   -------->HAHB4   --------->YAB1  <---------YAB1  --------->ICU4 -------->YAB1 ----->YAB1 ---->HAHB4 ---->ICU4   <---------ANAC58                       <----------DOF2 -----YAB1 <---------YAB1  <---------ICU4           <---------DAG2                         <---------AHL20(2) -->YAB1 --------->YAB1   --------->ICU4  <---------ALFIN1                                <---------YAB1 ---ICU4<---------YAB1    <---------YAB1 <---------ZAT18                         ----------->GT1 <--- ->ICU4 --------->ICU4  --------->YAB1   --------->ZAT18                      --------->DAG2     <--- ---------ICU4    ------>ZmHOX2a(1)      <---------ZAT14                     ---------->DOF2     <--- ------->ICU4<---------ANAC58            --------->ZAT14           --------->WOX13(1) --------->GLK1(2)   gataatgataatgatgcttcctcgtttgataattacatctatctgcactctctactttataagtagtagcaatctaagaaaaagggagaatttttatttg  887300                                                                                  ---------->DOF2                                                                              --------->LBD16                                    <------ZmHOX2a(1)                        <---------ANAC46                                   <----------ID1                           <---------LBD16                                  <---------TOE2(3)                      <----------DOF2     <------- ------ANAC46               <---------AHL20(2)                   --------->ARR11(3)       <------ZmHOX2a(1) ------ANAC58               --------->AHL20(2)                   <---------ARR11(3)      *TSS-------- ------ANAC58          <---------YAB1 ---------->DOF2   --------->GLK1(2)<---------------AGL15   ----   cctgtgaatgatgcaaacaaatgttttgattaaaataaggaaaagaaatgtgatgaagaaactggaagatttattctttacggagaaagagaggagaact  887400                                                                                              <------                                                                                <----------DOF2                                                                               <---------ANAC58                                            --------->ANAC46                   <---------ANAC58  <---                                            --------->ANAC58          --------->MYB52(2)    ------>NtERF2 --ARR14(2)                        >>>>>>>>>TBF1                      <---------MYB46(3)   --------->ANAC46 ->ARR14(2)                <----------DOF2  --------->ANAC58        <---------MYB52(1)     ---------- ------->GT1            <-----------GT1<----------ID1 --------->TOE1(2)    <----------DOF2 <---------ETT(1)   ggtaaaatgagagttttttttttttttttcttttgaagaagaagacaagacacagacctgagatagtaacgtttgttctttgctttcttctctccgacac  887500                                                                                     --------------->AGL15                                                                                    -----------------                                                                                <-------GAMYB                                                                               <---------MYB46(3)                                                                              <---------ANAC46                                                                             <---------At4g35610                                              --------->O2                   <------NtERF2                                              <---------O2 <---------ANAC58 <---------ERF1                                              ==========================================MYC_MYB                                              ===========================================MYC_MYB                                              <---------ANAC46            <------NtERF2 <---------ARR11(3)                                              <---------TGA1a             --------->ATERF1(1)                                           --------->ETT(2)<---------ANAC58 ------------>AtMYB77                                     ===================bZIP_DOF          <---------ZAT2<---------ARR11(1)                                     <----------DOF2   --------->REM1(2)  <---------At4g35610      --------->ANAC46             <-------TEIL        <---------ZAT14    --------->ZAT2--------->ARR14(2) <---------ANAC58                 <---------ARR11(3)  --------->ALFIN1    --------->At4g35610 <---------ANAC58                <---------GLK1(2)--------->ALFIN1       <---------ATERF1(1)     ---- ---ALFIN1                     --------->LBD16--------->TGA1a           <---------RAP2.6(2)    <<<<<< -------DOF2                   <---------TOE1(2)--------->ALFIN1       <---------LBD16 <---------CCA1(2) ->HVH21               <---------AtMYB61   <---------ETT(2)<---------ANAC46<---------DEAR3(1)  <-----   tttgcttcactcaaacgtctctgttttggtttccaggttcttttgtcgacgtgtgtgtgtagcgttttggaatcgcggctgcggttgccatatctattaa  887600                -------->P <---------ZAT18        <------MYB46(1)    --------->ZAT18     <-------GAMYB      <---------ANAC58    <---------MYB46(3)  <---------ANAC46  --------->ZAT14       <---------ANAC58  <---------ZAT14<------------MYB.PH3(1)                                                         ---- >AGL1<--------P<---------At5g28300                                   ---------->DOF2           ----- ----->MYB46(3)--------->MYB52(1)                             --------->MYB52(2)           ---------- <<<GT-1<------MYB83<---------MYB52(1)                      <---------MYB52(1)  <---------AHL20(2) ------GT1   <---------MYB52(2)                            <-------GAMYB        --------->AHL20(2)   ccactgcggttggagactaaccgttttcgtgggctaccaattgaaacgatttgattttgtcagttagtttgttaaagcgttttaaattagcgattgtaaa  887700                                                                                                <----                                                                                            <--------HAHB4                                                                                      <---------GLK1(1)                                                                                   <------MYB46(1)                                                                                 <--------P <--------                                                                               <---------MYB46(3)                                            --------->AHL20(2)                 --------->MYB55(2)<---   <---------KAN4(2)                        <---------AHL20(2)  --------->MYB46(3) <------MYB83 <---- ----->DAG2                      <-----------GT1              <-----------GT1 --------->ALFIN1<------ ----->DOF2  <---------YAB1    <---------AHL20(2)        --------->ATHB12  --------->DAG2  <---------YAB1 ->GT1      <---------AHL20(1) --------->AHL20(2)       <-------TEIL      ---------->DOF2  --------->ICU4   aagggaatgagcattatttttggacagactaatttaaacagtctaaaaaattagacgattcattgaaccgcttagaaaaagtggttggaattcattatta  887800       <---------AHL20(2)  <---------AHL20(2) <---------AHL20(2) --------->AHL20(2)                                                        <---------ANAC58 -----AHL20(1)                                                     <-----------HVH21 -ICU4 --------->AHL20(2)                                 <---------AHL20(2) ------YAB1                   ------->TEIL                --------->AHL20(2)              <---------AHL20(2) -----AHL20(2)           --------->YAB1     --------->ARR11(3)--------->YAB1              --------->AHL20(2) ---YAB1              <----------DOF2      <---------CCA1(2) <---------YAB1<---------ANAC58   tttttaaattttaatgtgtctatactttcatgaattttgttttttatatctataaaacaatttatgatatgtcactagcttactatacatatttttttag  887900  Previous    Next  AGI:  At5g03530.1    Description:  ATRAB ALPHA (Arabidopsis Rab GTPase homolog C2a); GTP binding. similar to AtRABC2b/AtRab18C (Arabidopsis Rab GTPase homolog C2b), GTP binding [Arabidopsis thaliana] (TAIR:AT3G09910.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63002.1); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras (InterPro:IPR013753); contains InterPro domain Small GTP-binding protein; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Rab18 (InterPro:IPR015598); contains InterPro domain RNA polymerase sigma factor 54, interaction; (InterPro:IPR0 Range:  from: 885521    to: 887389    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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