Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                          <---------ALFIN1                                     --------->MYB46(3)                                    ------>MYB83                                    ------>MYB46(1)                                   --------->MYB52(1)                                   --------->MYB55(1)                                  --------->MYB46(3)                                  --------->AtMYB61                       <---------ZAT18 <---------ZAT18         <----------DOF2                       --------->ZAT14 --------->ZAT18      ------>MYB83                       <---------ZAT14------->GAMYB         ------>MYB46(1)     --------->ANAC46  --------->ZAT18--------->RAP2.6(2)   -------->P                       <------- ->ZAT2   <---------YAB1      --------->ETT(2)            <---------MYB111(1)           ------>ZmHOX2a(1) --At4g35610          <---------ZAT6-------->P            <---------MYB59              --------->TOE2(3) --ZAT2   --------->ICU4      <---------ETT(2)            <---------MYB46(2)----------->RAV1(2) ->At4g35610 <---------YAB1 --------->ZAT14     --------->YAB1--------->TOE2(3)    <----------DOF2   accataaacgacattattctactagtgtactgtagaccaaccgcacttgatcatatcaaacctacctttacctcttccccctgaactttcctaaatgtca  883000                --------->AHL20(2)                --------->YAB1                <---------AHL20(2)            --------->YAB1            --------->ATHB12            <--------HAHB4            <---------ICU4         --------->WOX13(1)                                                 --------->ANAC58     --------->ANAC58                                                       --------->ANAC58     --------->ANAC58                        --------->AHL20(2)     <-----------GT1     --------->ANAC46                        <---------AHL20(2)   --------->AHL20(2)  --------->MYB46(3) <-----------GT1      --------->YAB1          <---------AHL20(2)       ------>ZmHOX2a(1) ----HVH21 <---------ATHB12          <---------ATHB12  <----------DOF2    ---------->DOF2  <---------HSFB2a(2)   tacaatcaccccaatcatttatattactccattcactctatcatttataaattttgacttttgttcatttaaaccattaagcaatctctagtcctagata  883100                                                                  <---------AHL20(2)                                                        <<<<<<<<<<MYB80                          ---------->DOF2              <------MYB46(1)                     <---------ARR11(3)                <------MYB83               <-----------GT1     <----------ID1     <---------AtMYB61          <------MYB83             <---------AHL20(2)  ---------->DOF2      --------->MYB59            <------MYB46(1)   agtagaaacgagtatttaaaccagttcttaaagaaaaaagacaaatattatctggtttggtttgatattttttttgttttgtttggtttagtttgattta  883200                                  --------->LBD16                                 --------->ANAC55(2)                                 <---------ANAC55(2)         ----------->GT1                                 --------->ANAC46     <---------YAB1                                <---------LBD16     --------->YAB1              --------->ANAC55(2)                   <---------AHL20(2)              <---------YAB1              <---------TOE2(3)             ----------->GT1   --------->MYB52(1) <-----------GT1             <-----------GT1       <---------YAB1  <-----------GT1           <-----------GT1            <---------WOX13(1)     --------->YAB1--------->AHL20(2)            --------->YAB1 <---------AHL20(2)   gtttcaattctaattgagtaatttataacaaatttacggaaattgagttatttatcatttttgtagttaaatggtttgatttacgttttgttgtgaagaa  883300                                    --------->GLK1(2)                                   <---------GLK1(2)     --------->RVE1(1)             <---------ARR14(2)    --------->ARR11(3)             --------->ARR14(2)    --------->GLK1(2)           --------->ETT(1)                                                  ---    <---------ARR11(3)         ---------->ID1                                                --------   --------->CCA1(1)       <---------ANAC58        --------->LBD16                    <-------TEIL---   --------->RVE1(1)       <---------ANAC58      <---------LBD16                  <---------ICU4 <<<<   acaaaaaatctctcattttccatccaatttcttgtcggattctaggtgtaaaccggattagaaacctcttagttgagaacttaataagttcatcccacaa  883400                        --------->ICU4                        <---------YAB1                      <-----------GT1                   --------->YAB1                   ----------->GT1               <---------WRKY38(1)               <---------WRKY12                                                  --------->At4g35610              ------------>CBF                                                <---------At4g35610            <---------ANAC46                                                  --------->At4g35610         --------->ALFIN1                                             <---------AHL20(1) ------>YAB1----------->GT1                                           --------->AHL20(1) ---->CBF<---------ANAC46            <---------ANAC58              --------->AHL20(2) ------>AHL20(2) <------------CBF    <---------ANAC58            --------->AHL20(2)   <---------ATHB12 <<<<<ARR2  <---------PCF2<------------CBF    *TSS   --------->YAB1--------->YAB1<---------At4g35610   tcaaattagttgtggggtcaattgtaactattgaaagtttcgaggctaaaaactataaaaacatgaaaataatatttttcagcagctaatcaacttgttt  883500                                                            --------->AHL20(1)                                                            <---------AHL20(1)                                                            --------->AHL20(2)                                                            <---------AHL20(2)                                                           --------->AHL20(2)                                                 --------->ETT(2)                                                 <---------ETT(2)                                            <---------At4g35610  <-----------GT1    ---------->DOF2                <---------HSFB2a(2)        <-----------GT1 <---------AHL20(2)  ----------->GT1         ----------->RAV1(1)          <---------DAG2--------->HSFB2a(2)    <---------ANAC58        --        ----------->HVH21             <----------DOF2--------->LBD16  <---------ATHB12        >>>>>>>   <---------At4g35610           <---------MYB52(1) <---------HSFB2a(2)    <---------ANAC58>>>>>>>>>TBF1   tcttcagcgagcgacattttggaaggaagcattccattagcttttttgctgtctccagaaaataaattttcaatctttcgtcggaaaaaagaagaagaag  883600                                                                                         <------NtERF2                                                                                        --------->ANAC58                                                                                        ------>NtERF2                                                                                        --------->LBD16                                                                                        --------->ANAC58                                                                                       --------->DREB2C(2)                                                                                       --------->RRTF1(2)                                                                                       --------->RRTF1(3)                                                                                       <---------DEAR3(1)                                                                                       --------->RAP2.3(3)                                                                                       --------->DEAR3(1)                                                                                       <---------ATERF1(2)                                                                                       --------->ATERF1(2)                                                                                       --------->RAP2.3(2)                                                                                      <------NtERF2                                                                                      --------->RAP2.3(1)                                                                                      --------->ERF1                                                                                      --------->ATERF1(1)                                                                                      --------->ORA47(2)                                                                                     <---------RRTF1(1)                                                                                     <---------ATERF1(1)                                                                                     <---------RAP2.3(1)                                                                                    <---------ANAC46                                                                                  <---------ATERF1(1)                                                                                 --------->ALFIN1                                                                                 --------->ARR14(2)                                                                                 <---------ARR14(2)                                                                                <-------GAMYB                                                                                --------->ATERF1(1)                                                                               --------->MYB55(2)                                                                               <---------MYB46(3)                                                                               <---------DEAR3(2)                                                                              <---------RAP2.6(2)                                                                              <---------DEAR3(1)                                                                              <---------ANAC58    --------->ZAT2                                                            <---------DREB2C(2)    --------->At4g35610               <------ZmHOX2a(2)                       <---------ANAC46    <---------ZAT2                   <---------ARR11(3)      <-----------GT1  <---------ANAC58<------    <---------At4g35610              --------->ARR11(3)<----------DOF2 XXXXXXXXXXXXXXXXXXXXXXX>MIR404   <---------ARR14(2)          ---------->DOF2         <---------DAG2----------->HVH21<---------LBD16   --------->ARR14(2)       --------->ANAC58         <---------At4g35610    ------------>AtMYB77 ------->At4g35610          --------->ANAC58       <---------ZAT18   ----------->TGA1------>NtERF2 >>TBF1                --------->ANAC46   <---------ATHB12 <-----------GT1 <---------DEAR3(1) -------   aagcagagctgggtttagttttttcacgagaagcaaagagatcaataagtcagtgagcttttttctcgtttctgacgatggcggttgcgccggcaagagc  883700          <---------ICU4                           <---------At4g35610          --------->YAB1                          --------->MYB52(2)          --------->ATHB12                      <---------MYB52(1)         --------->ICU4                       <---------MYB46(3)                        ----------->GT1         <---------YAB1                      <---------ANAC46              <---------------AGL15 ---ARR11(3)    --------->TOE2(3)          ------------>AtMYB77            --------------->AGL15 -->ARR11(3) <-----------GT1        <---------DEAR3(1)  <----------DOF2   ----------------->AGL2    -   tcgttcagactatgattacctcatcaagcttcttctcatcggcgatagcggttagcttctttatccatttatgtgttctcaaattagcaattgaaaaaac  883800                                                    ------>ZmHOX2a(2)                                                    --------->YAB1                                                   <------ZmHOX2a(2)                               --                                                  <---------ARR14(2)                            -----                                                  --------->ARR14(2)  --------->ARR11(3)       ------                                              <-----------GT1       <---------YAB1             <-----                         <---------GLK1(2)   <-----------GT1<---------TOE1(3)            <---------ICU4 --------->DOF2    --------->At4g35610  <---------MYB52(1)  <---------TOE2(3)           --------->ICU4   tcaaaagtgtttgatttcatcttctgagattatctcatgtctgtttttttccgatcttaattagggttttatgattttgttttgtttgtgctaattacta  883900  Previous    Next  AGI:  At5g03520.1    Description:  AtRABE1d/AtRab8C; GTP binding. similar to AtRABE1e/AtRab8E (Arabidopsis Rab GTPase homolog E1e), GTP binding [Arabidopsis thaliana] (TAIR:AT3G09900.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69245.1); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras (InterPro:IPR013753); contains InterPro domain Small GTP-binding protein; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain RNA polymerase sigma factor 54, interaction; (InterPro:IPR002078) Range:  from: 883446    to: 885424    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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