Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                  <------ZmHOX2a(2)                                                                --------->CCA1(2)                                                               <-----------ARR10                                                               --------->ARR11(3)                                                               <---------ARR11(3)                                                               --------->AGP1   --------->HSFB2a(2)                                         <---------AGP1 ---------DOF2                                                --------->RVE1(1) -------ANAC58                                         ----------->RAV1(1) -------ANAC58                                        --------->REM1(1)                         ----- -->LBD16                                            <-------TEIL------>ZmHOX2a(2)              <---- --LBD16                                         <---------TOE1(3)          --------->GLK1(2)   ----- -LBD16          ------>MYB46(1)                 <---------TOE2(3)    --------->YAB1<---------ANAC46 -GT1            ------>MYB83         --------->AHL20(2)   ---------->DOF2 <---------GLK1(2)    <----   gctttcgagagtttgcaccaatctcgttcaattgcagcaatttcataccctaaggtacaacaaaagatctaatcagagattctactacgcgtacttgata  874900           <---------ANAC58           <---------ANAC46           <---------ANAC58  <-----------GT1                                                                   --------->DAG2 <<<<<<<<<<GT-3b                                                                <---------------AGL15 ---->ARR11(3)                                              --------->DAG2     ----------------->AG -----ARR11(3)                  --------->TOE2(3)        ---------->DOF2       ----------------->AGL1 ---->AHL20(1)               ----------->RAV1(1)      --------->ANAC58       --------->GLK1(2) -----AHL20(1)      ---------->DOF2--------->YAB1     --------->ANAC58  ----------->GT1             <   tatttttcttcttacttgtggagaaagaaaacaacattaatagagaaacagaggttaagcaaagagtgagtaagaagaaaatccataaggggaagaagat  875000             <-------TEIL           <---------GLK1(2)           --------->ARR14(2)           <---------ARR14(2)          <------NtERF2        <---------ANAC58                                        --------->YAB1        <---------ANAC46                                       <---------ATHB12        <---------ANAC58                               <---------AHL20(2)       <---------LBD16                                 --------->AHL20(2)       <XXXXXXXXXXXXXXXXXXXXMIR842                    <---------ATHB12 ----------DOF2        <---------YAB1    --------->TOE2(3)   --------->WOX13(1)          --------->YAB1   tactttgatggcggattcgtccatggttattgatacagagaaaccacaatttctcaattaatccaatcacaaacacacattgaatcgtcgttcataaaac  875100             --------->ANAC55(2)       <-----------ARR10      <---------CCA1(2) <---------ARR14(2)                                <---------ATHB12 --------->ARR14(2) --------->DAG2            --------->YAB1                                       <- --------->GLK1(2) ---------->DOF2     --------->At4g35610        --------->YAB1                  <--   gagaatccaaatctcatgtgataaagcttagaagtagaaacagctctatcacaatgaagaaatagctatgagaattcaaatagaactctcagagaaacag  875200                                                           ------>ZmHOX2a(1)                                                        <-----------GT1                                                    <---------YAB1                                                  *TSS <-----------GT1                                                 <---------YAB1                                               --------->ATHB12          >>>>>>>>>TBF1                        <---------ICU4                     <----------DOF2     <---------ATHB12                          --------->YAB1              <---------TOE2(3) -----ZmHOX2a(1)                              --------->ICU4              <-----------GT1 --------ID1 >>>>>>>>>TBF1                <---------YAB1---------->ID1<----------DOF2         <------   aggacaaatgaagaagaagaagataacaattcaacacaaatctcatgaatgattatttttcctcttcgcttccttttaacgcttcttttctcttctgtta  875300                                                <-------MYC3                                                ------->MYC3                                                ------->MYC2                                                <-------PIF5                                                <-------MYC2                                                ------->MYC4                                                <-------MYC4                                                ------->PIF5                                               --------->ANAC46                                               <---------TGA1a                                               ======================MYC_MYB                                               --------->ANAC55(2)                                               =============================bZIP_DOF                                               <---------O2                                               --------->O2                                               --------->TGA1a                                             <------------OsbHLH66                          ------>MYB46(1)    <---------ALFIN1                                    ----     <---------ATHB12     ------>MYB83    --------->ANAC46           <---------YAB1     --------->AHL20(2)     ------------>CBF >>>>>>>>>>MYB80    <---------MYB55(2)      <----------DOF2        <---------AHL20(2)    --------->ANAC46 <-----------GT1     --------->MYB46(3)  ------->GAMYB           --------->YAB1 ---MYB52(1) --------->ANAC46         <---------ALFIN1    <-----------GT1   ------>ZmHOX2a(1)    ----   gcatccaaacaatctcagccattaaaccaacttctaatctccaccctccacgtgtccatttaaccctctttcttattcctatatcagttataaattgaca  875400                                                                          <---------AHL20(2)            <---------ARR11(3)                             --------->TOE2(3)                     <---            --------->ARR11(3)                            ----------->GT1--------->AHL20(2)    <----- --------->MYB46(3)                             <----------DOF2          <---------AHL20(2)    <----- ----->ANAC58                                 ---------->ID1<---------MYB52(1)                 <----- ----->ANAC58 ------>ZmHOX2a(2)           <----------DOF2 <---------ANAC46--------->AHL20(2)   <-----   agaacgactgctatgatctagggatttagttctgaactaggtttctttgtcttttttgtttcgttaattccctaattttattctggtttgggacatttcg  875500     <---------------AtSPL8 ------ANAC46 ----ANAC46          <---------MYB52(1)             ---------->DOF2 ----ANAC58        <-----------RAV1(1)         <---------TOE1(2)                                 <--- ----ANAC55(1)  --------->MYB52(1)          <---------ANAC58                                <-------- ----ANAC58   --------->MYB46(3)            <---------ANAC58                   <----------DOF2   <---   tgtgtatgagttacgaacaaactgttgggccttgaatttagttctggcctacgtttaagcccatatggttctaatcttcttctttttttataagttgaag  875600                                                         <---------AHL20(1)                                                         <---------AHL20(2)                                                         --------->AHL20(1)                                                      --------->YAB1                                                --------->YAB1                                        <---------ANAC46 --------->AHL20(2)                        --                               --------->AHL20(1)    <---------YAB1                                <-                               <---------AHL20(2)  --------->YAB1                                  --                               --------->AHL20(2) <---------YAB1                                   <-                            --------->YAB1      <---------ICU4              ------>ZmHOX2a(2)     --- ------ANAC58              <---------ATHB51   --------->AHL20(2)          <---------ARR11(3)      <-- -REM1(1)                  <---------ATHB12   <---------AHL20(2)<---------YAB1             --------->MYB52(1) ------ANAC58 <---------REM1(1)<---------AHL20(1) ----------->GT1         --------->ARR11(3)      <--   cttgtagtacttggtaatgtagcgcatcaataataaattgtggagcataaaaatgataataaaatgactattgtttgatcttggagtccaaacaaactgg  875700                                                                           <---------ANAC58                                                                           <---------ANAC46                                                                           <---------ANAC58                                                                    ------->GAMYB                                    --------->GLK1(2)             ------>MYB46(1)                            <---------ANAC58                      --------->At4g35610             <-----------HVH21      <---------ARR14(2)            ------>MYB83 ------->ARR14(2)           <---------ANAC58                     --------->MYB52(1) --------ARR11(3)      <----------DOF2                       <---------WRKY18(1) ------->ARR11(3) <-----------RAV1(2)                       --------->WRKY12 --------ARR14(2)<------NtERF2      --------->ARR14(2)      --------->WRKY45 ------>GLK1(1) ------>NtERF2    --------->LBD16            --------->WRKY38(1) -------GLK1(1)<---------ETT(2) --------->HSFB2a(2)        <---------MYB52(1)----------->GT1 -------CCA1(2)--------->ETT(2) <---------HSFB2a(2)       <-------GAMYB<---------WOX13(1)     -------   atatcttcaaaccgatgtcgccaggcttttgcttcccgaatccaaaattaagactcttcccgttgaccaactgaatgacttgtttaaaatcaccttcaaa  875800  Previous    Next  AGI:  At5g03495.1    Description:  nucleotide binding. similar to nucleic acid binding / nucleotide binding [Arabidopsis thaliana] (TAIR:AT5G03480.1); similar to Os08g0192900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061178.1); similar to hypothetical protein OsI_027109 [Oryza sativa (indica cultivar-group)] (GB:EAZ05877.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 873330    to: 875250    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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