Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            ---------->DOF2                     <---------------AGL15                                                  ---------                     <----------DOF2                                                      ------>NtERF2    ------->TEIL     --------------->AGL15                                               --------->DEAR3(1) -------->DOF2    <-----------GT1                                                      ------->GAMYB ----->RAV1(1) --------->ARR14(2)                                                     --------->ANAC58 --->RAP2.6(2) --------->ARR11(3)                           <---------LBD16           --------->ANAC58 ----ID1       <---------ARR11(3)                       ------>ZmHOX2a(2)             --------->ANAC46 >ANAC58       <---------ARR14(2)                     --------->ARR11(3)           <---------WRKY45 < >ANAC46      <------ZmHOX2a(1)            --------->AHL20(2) --------->LBD16      <---------WRKY12-- >ANAC58    <---------TOE2(3)    <---------ANAC46     <---------ARR11(3)           <---------WRKY38(1)   caaaagtacctcttgaggattttctttttaaagtctcttggaacataaatttgtgtgatctctccgcatgaagcgaaatgttttgtcaacgccagcctga  870500                                  ------->GAMYB                                 --------->ANAC58                                 --------->ANAC58                                 --------->ANAC46         ---------->DOF2   --------->TOE2(3)        ------>ZmHOX2a(1)  --------->TOE1(3)                                                    <---- --------->ARR14(2)     --------->ARR14(2)                                                     <XXXXX <---------ARR14(2)     <---------ARR14(2)                                            ----------->GT1 -->RAV1(2)            <---------CCA1(2)   <---------ANAC58                 <---------WOX13(1)<------ ------ZmHOX2a(1)  <-----------HVH21       <---------ANAC58               --------->ATHB12   -------- --------->ARR10<---------O2------>ZmHOX2a(1)                            <---------YAB1    <---------YAB1   gaggatactccttaagcgaagtgtcatatccttcaacgcaaatagccgtgctactgctacttcaacaatttgattttgattgcaggttgagttaatatta  870600                                                      --------->WRKY38(1)                                                   <---------ANAC58                                                   <---------ANAC55(1)        ----------->GT1                            <---------ANAC58        <---------ANAC55(2)                 <---------AHL20(2)        --------->ANAC55(1)                 <---------AHL20(1)        --------->ANAC55(2)                 --------->AHL20(2)        --------->ANAC46         --------->AHL20(2)<---------ANAC46        --------->ANAC58   --------->ANAC58 --------->AHL20(1) -----AHL20(2)             --------->ANAC58<---------AHL20(2) XXXXXXXXXXXXXXXMIR823<-----------GT1  --------->AHL20(2) ---YAB1--------->ANAC58   --------->ANAC46--------->AHL20(2)    --------->ZAT6               ------- ->AHL20(2)        <---------GLK1(2) ----------->GT1  --------->ZAT18                         -------   tatgatcaacacgtaaaacaagaatttccacacaaatatatgtaaataaatttacgtggactgtttatcactatcgttcaattccagcgacttcagacgc  870700                         --------->GLK1(1)         <---------AHL20(2) --------->ZAT14                         <---------GLK1(1) ------->TEIL<<<<<<<<<<GT-3b--------->ZAT18              <---------ARR11(3)        <---------ANAC55(2)      <---------ANAC46              --------->ARR11(3)        --------->ANAC55(2)      <---------ANAC58              --------->GLK1(2)         --------->ANAC46<-----------GT1   ---------->DOF2              <-----------ARR10        --------------->AtSPL3    <---------ANAC58    --------->REM1(1)--------->YAB1    --------------->AtSPL8 <----------DOF2            <---------ICU4 -->ANAC58   --------->RVE1(1)------>ZmHOX2a(1)   <---------AHL20(1)  <---------ZAT18   --------->ICU4 -->ANAC58 --------->AHL20(2)--------->TOE1(2)   <---------CCA1(2)    <---------ZAT14--------->AHL20(2)   taagttacaacaaaaaaatctaatcagaaatcctactactatacgtacttcatatatttttcttctttcttgtgcagaaagaaaccattaattagtagag  870800                                           --------->HSFC1(2)                                 <------                                           <---------HSFC1(2)                                 <------                                           --------->HSFB2a(1)                               --------                                           <---------HSFB2a(1)                               <-------                                         --------->ARR14(2)                          <---------ARR14(2)                                         <---------ARR14(2)                          --------->ARR14(2)                                         <---------GLK1(2)           <------ZmHOX2a(2)   --------->LBD16                                        <------NtERF2               --------->ARR11(3)  <---------HSFB2a(2)                                      <---------ANAC58              --------->ARR14(2)  --------->HSFB2a(2)                                      <---------ANAC46     <------------CBF        <---------MYB46(3)                                      <---------ANAC58   --------->AHL20(2)        <------MYB46(1)                              <----------DOF2            <---------AHL20(2)        <------MYB83    <-            ---------->DOF2   --------->TOE2(3)      <---------YAB1 <---------ARR11(3)  <---------ANAC46   <-------TEIL   --------->At4g35610<---------LBD16 ----------->GT1<---------ARR14(2) <---------LBD16   aaacgtacagaggttaaagcagaagaagattactttaatggcggattcttccatggtgataaattgacaagatcgactgctaggctggttccggagatat  870900      ------>ZmHOX2a(2)     <------ZmHOX2a(2)     --------->CCA1(2)    <-----------ARR10    --------->AGP1    <---------AGP1    --------->ARR14(2)    <---------ARR14(2)    --------->ARR11(3)    <---------ARR11(3)                                                             <---------ANAC46   <---------CCA1(2)                                                             <---------ANAC58 ---RVE1(1)                                                                      <---------ANAC46 ---CCA1(1)                                                                      <---------ANAC58 ->ARR11(3)     --------->MYB59             <---------DAG2                    ------>ZmHOX2a(1)     - --ARR11(3)     <---------TOE2(3)     <----------DOF2                  <---------AHL20(2)         --- ----------GT1  <---------TOE1(3)  ---------->ID1                      --------->AHL20(2)<-----------   ttttcagatctagggatttaggtttgaagatggttttgttctttccccttattctggtttgggacatctctaaataaatcctatcgtgtataagttacga  871000                                                                                                   <-                                                                                                 <---                                                                                                 <---                                                                                                 ----                                                                                            ---------         <---------PCF2                                                                   <---------MYB52(2)        ----------->TCP11(1)                                                         --------->LBD16      --------->ALFIN1       ---------->DOF2                                        --------->ANAC46   <-----------RAV1(1)   <---------ANAC58                                          --------->TOE2(2) -------->MYB52(1)       <---------ANAC46                                          --------->TOE1(2) ------>MYB46(3)         <---------ANAC58                                 --------->LBD16 --------->MYB46(3) ----AtSPL8        <---------AHL20(2)  <---------AHL20(2)    --------->AHL20(2)    <---------LBD16 <-   acaaactggtgggccttatatttagttgcgtttaagcccatataatctcttaaacagaacaaaaaaaatgttgaaccggactaaacccgcgaacaaacgg  871100                                                   <---------YAB1                                             <---------ARR14(2)                                             <-----------ARR10                                             --------->ARR14(2)                                             <---------ARR11(1)                                             --------->ARR11(3)                                     < -----MYB46(1)                               <---------ARR11(3)                                     < -----P                             <---------ARR11(3)                                           <--- ------MYB52(1)                    <---------CCA1(2)     <---------ANAC46                     <------ ----->ALFIN1             <---------MYB52(1)<---------CCA1(2)          <-----------GT1        ------- >MYB52(1)          <---------ANAC58<---------ARR14(2)   <---------ANAC58                  --------->YAB1 -----MYB83         <---------ANAC58--------->ARR14(2)   <---------ANAC58--------------->AtSPL8 -----   ttgggccttaaatttagttcaggcctgcgttaagcccatatattccaaatcttcttattccttgtgaaacatatttctgttccacttactatatcagaac  871200           <---------AHL20(2)    <-----------GT1 ---------DAG2                                                                        <---------ATHB12 ----------DOF2                                                                       <---------YAB1 ------ALFIN1                                                                        <---------TOE1(2) ---ARR14(2)                 ----------->GT1        --------->At4g35610        <----------DOF2 -->ARR14(2)        ---------->DOF2          <---------REM1(1)           <---------YAB1--------->YAB1 ---->MYB46(3) ----------->TGA1 <---------YAB1---------->DOF2    ---------->DOF2    ------>ZmHOX2a(1)   cactttatacgttttaaatgacgaaagaaaaatgtttatagttttagatgaagcagttgaagaacgagaaagagtatgattctttcctatgatcacttct  871300                                      <----------DOF2          --------->AHL20(2)                      --------->MYB52(1)  <---------TOE2(3)<-------TEIL                 <---------YAB1              <----------DOF2   ----------->GT1       ---------->DOF2          --------->TOE2(3) ----        <----------DOF2       ---------->DOF2    ---------->DOF2           <---------AHL20(2)    ----   tagtaatattctttttctttaacaaaactgaagaaagtaactttgagattggaaaggaaagttcataaattttgaaatttatcttagactatgagtcaaa  871400  Previous    Next  AGI:  At5g03480.1    Description:  nucleic acid binding / nucleotide binding. similar to nucleotide binding [Arabidopsis thaliana] (TAIR:AT5G03495.1); similar to H0714H04.9 [Oryza sativa (indica cultivar-group)] (GB:CAH66982.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 869207    to: 870854    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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