Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                         <<<<<<<<<TBF1                        <---------ATHB12       --            ------>ZmHOX2a(1)    ---------->ID1                   --------->LBD16<---------ANAC58 --- -------ETT(2)          ------>ZmHOX2a(1)                    <---------ANAC58    <---------ANAC58 <-- ------>ETT(2)   <------------------------ANAC81             <---------ANAC58  ------->TEIL ------->TEIL   tcgacatatgcttcctcttcgtcttcctcttcttcgtcttcttcttctccatagtgtccaaatgcttccccaaattcaatgaatcgtgcaattgtacctc  862200                                        --------->MYB52(2)                              <------NtERF2                             ------>NtERF2                            <---------DEAR3(1)                            --------->ATERF1(2)                     --------->LBD16<------MYB83              <--------P    <---------RAP2.6(2)            ----------->GT1--------->RAP2.6(3)       --------->ZAT14    <---------ATERF1(1)                                                   -----       <---------ZAT14   --------->ALFIN1                                                       *TSS      ----------->HVH21--------->DEAR3(1)                                                       <----  --------->MYB46(3) ------>NtERF2  <------MYB46(1)            <---------LBD16                 <----- --------->HVH21    <---------DEAR3(1) <-------TEIL          <---------GLK1(1)              <-------- ------>LBD16--------->At5g28300<----------DOF2 <---------MYB52(1)           <----------ID1 <------NtERF2 ---------HVH21    <---------LBD16 --------->MYB59           --------->GLK1(1)              ---------   cgtgaccactgaaggggtaactccggcgaggcggcattaggttcgtttctgttactgtatcagatttcggaagagaagaaggccaaaacgtctcggcaga  862300                                         --------->AHL20(1)                                        --------->YAB1                                      --------->AHL20(2)                                     --------->YAB1                                              <xxx                                     --------->AHL20(2)                                --------->YAB1                                 <---------AHL20(2)                                    <-----------GT1                                 --------->AHL20(2)                                 --------->YAB1                                --------->ICU4                                     <---------YAB1<xxx                            --------->LBD16                                       --------->AHL20(2)                           --------->ANAC46                                     <---------AHL20(1)                           --------->ANAC58          ----------->GT1            --------->AHL20(1) <x                           --------->ANAC58  --------->ICU4                     <---------AHL20(2) <x ---->ARR14(2)             --------->HSFB2a(2)     ---------->DOF2           --------->AHL20(2)  <xxx -----ARR14(2)             <---------HSFB2a(2)   <---------AHL20(2)       ----------->GT1        ---- -NtERF2                   --------->LBD16 --------->AHL20(2)          ---------->DOF2<---------YAB1 -At4g35610               <---------LBD16--------->AHL20(2)       ----------->GT1 --------->AHL20(1) >At4g35610              --------->MYB52(1)--------->YAB1    --------->AHL20(2) --------->AHL20(2)<xx   gtcgcagaggtatcgaataagagagactcccggaattaataaaaataatatttaaaagtaaaaaaaaatagttaaaagataaaatattataacaatgcgg  862400                                                      --------->At4g35610                                                      <---------At4g35610                                                     <xxxxxxxxxxxxxxxxsmallRNA(le3)                                                     <xxxxxxxxxxxxxxxsmallRNA(se3)                                                     <xxxxxxxxxxxxxxxsmallRNA(fl3)                            <xxxxxxxxxxxxxxxxsmallRNA(i)                          <---------ARR14(3)         <xxxxxxxxxxxxxxxsmallRNA(si3)                          <---------GLK1(2)         <xxxxxxxxxxxxxxxxsmallRNA(s)                          --------->ARR11(3)       <xxxxxxxxxxxxxxxxxsmallRNA(si3)                          --------->AGP1           <xxxxxxxxxxxxxxxxxsmallRNA(se3)                ----------->HVH21                  <xxxxxxxxxxxxxxxxxsmallRNA(fl3)               <xxxxxxxxxxxxxxxsmallRNA(le3)      <xxxxxxxxxxxxxxxxxxsmallRNA(le3)               <xxxxxxxxxxxxxxxsmallRNA(si3)      <xxxxxxxxxxxxxxxxxsmallRNA(fl3)              --------->ANAC55(2)                 <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)              <---------ANAC55(2)                 <xxxxxxxxxxxxxxxxxxsmallRNA(si3)              --------->ANAC58                    <xxxxxxxxxxxxxxxxxxsmallRNA(se3)              <xxxxxxxxxxxxxxxxsmallRNA(le3)     <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)              <xxxxxxxxxxxxxxxxsmallRNA(i)       <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)              --------->ANAC58                   <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)              --------->ANAC46                   <---------ZAT2     ---------->ID1             <xxxxxxxxxxxxxxxxxsmallRNA(le3)     <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)             xxxxxxxxxxxxxxxxxx>smallRNA(fl3)    ----------->RAV1(2)*TSS  <---------YAB1             xxxxxxxxxxxxxxxx>smallRNA(fl3)      --------->ZAT2  <----------DOF2             xxxxxxxxxxxxxxxxx>smallRNA(se3)    <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             --------->TOE1(2)                  <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            <---------ALFIN1------>ZmHOX2a(2)   <xxxxxxxxxxxxxxxsmallRNA(fl3)  <---------AHL20(2)            xxxxxxxxxxxxxxxxxx>smallRNA(fl3)    <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)            xxxxxxxxxxxxxxxx>smallRNA(si3)      <xxxxxxxxxxxxxxxxxxxxsmallRNA(l2)            <xxxxxxxxxxxxxxxxsmallRNA(fl3)      <xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)        ------>ZmHOX2a(2) --------->ARR14(2)    <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      --------->MYB52(1)<---------MYB46(3)      <---------ARR14(2)  <-----------ARR10    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)     xxxxxxxxxxxxxxxx>smallRNA(i)              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxsmallRNA(i)               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   --------->ALFIN1  <-----------HVH21        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <xxxxxxxxxxxxxxxxsmallRNA(s)                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxsmallRNA(fl3)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <xxxxxxxxxxxxxxxxsmallRNA(s)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <---------ANAC58  <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxsmallRNA(se3) <---------ANAC58  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <---------LBD16  --------->AHL20(2) <---------ANAC46 ------>NtERF2              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                <--- xxxxxxxxxxxxxsmallRNA(s) <---------ARR14(2)<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)               ---- xxxxxxxxxxxxsmallRNA(si3)<---------ARR11(3)<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            ------- xxxxxxxxxxxxxxxxxsmallRNA(fl3)     ----------->HVH21<xxxxxxxxxxxxxxxsmallRNA(le3)         --------->TOE2(3) xxxxxxxxxxxxxxxsmallRNA(s)<------ZmHOX2a(2)<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         <--------- xxxxxxxxxxxxxsmallRNA(i)<---------CCA1(2)  <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)          ========== ----->ALFIN1xxxxxxxxxxxxxxxxxx>smallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->AHL20(2) xxxxxxxxxxxxxxsmallRNA(s)--------->ARR14(3)<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)     <---------AHL20(2)   tgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcttgttgttatcatttaatatttaaactttaat  862500                  ==================================================bZIP_DOF                  <---------TGA1a                  --------->bZIP60(1)                  <---------bZIP60(1)                  --------->bZIP60(2)                  <---------O2                  --------->TGA1a                  --------->ANAC46                  <---------ANAC55(2)                  --------->ANAC55(2)                  --------->ANAC58                  --------->ANAC58                  --------->O2                     <---------ANAC58                      <---------LBD16                <---------ALFIN1                   <---------ANAC58                   --------->CCA1(2)       --------->ANAC58                            --------->MYB52(2)                --------->ARR11(1)       --------->ANAC46                           <-------TEIL                       --------->ARR11(3) ------ICU4   <-----------TGA1                 <---------HSFB2a(1)                   <---------ARR14(2) ----->YAB1   <-----------HVH21            --------->AHL20(2)          --------->DAG2--------->ARR14(2) -->YAB1     --------->ANAC46<---------------------WRI1  <----------DOF2           ----------->ARR10 -DOF2 --------->ANAC58 <------------CBF  <---------ATHB12*TSS       ---------->DOF2 <---------ARR11(3) ===========================bZIP_DOF  ------------>CBF  <---------ANAC46  --------->ALFIN1        ---   aatctctaaacgtaagcgtcacgtcaaattggtcgcagtcttcaatgaaatgttcgtgacttttagggaagaaaaggtgtttggagagatatggggagaa  862600                                                <---------CCA1(2)                                             --------->HSFC1(2)        <---------GLK1(2)              <---------------AGL15          <---------HSFC1(2)       <---------ZAT2        <---------DAG2                      --------->ANAC58          <---------At4g35610        <----------DOF2                <---------ANAC58               --------->At4g35610     <-----------GT1                   <---------ANAC46           --------->ANAC46    <-----------GT1                    <---------ANAC58--------->REM1(1) --------->ARR14(2)       --------->AHL20(2)--------->ANAC58     <---------REM1(2) <---------ARR14(2)  ----------->GT1<---------DEAR3(1) <---------bZIP60(1) ------>YAB1 --------->ZAT6        --------->ATERF1(1) --------->bZIP60(1)                <---------SPL7   gcatattttcctttttcactaagaagaaaaaaatggcgatggcgagaagcatctcttacatcacctctactcagcttctccctcttcatcgtcgtcccaa  862700                                                                           ------>MYB46(1)                                           <---------MYB52(1)              ------>MYB83                        --------->YAB1    --------->LBD16                <---------MYB59           <-                 ----------->GT1         <---------ANAC46           <----------DOF2                <-                >>>>>>>GRF7           <-----------GT1               ------>ZmHOX2a(1)           -----               <-----------RAV1(2) <---------AHL20(2)             ------>ZmHOX2a(2)        --------->WOX13(1)             <-----------HVH21    --------->AHL20(2)       --------->GLK1(2)             <---------ATHB12   catcgccatcatcgatgtcaggtataacataatcgatttatttccgtcgattttagtcactaatctgatcctttaccaaattttagttcgaatcaatccc  862800                                                                                                 ----                                                                                            -------->HAHB4                                                                                            ---------                                                                                            <--------                                                                                           --------->ICU4                                                                                        <---------AHL20(1)          <---------TOE1(2)                      <----------DOF2                        --------->AHL20(1)          <---------TOE2(2)                   <---------ANAC58                          --------->AHL20(2)          <---------TOE2(3)                   <---------ANAC58                          <---------AHL20(2)  <---------YAB1                          --------->GLK1(1)                          --------->WOX13(1) --------ATHB51                           --------->CCA1(2)        <----------DOF2 <------ZmHOX2a(2) --------YAB1                             <---------GLK1(1)   <----------DOF2 --------->LBD16 <------ ---->LBD16          <-----------GT1--------->ICU4            <---------DAG2<---------LBD16<---------ATHB51   gattattgttcttaggtttgattttgctctactatgtaatactgatatgcgttttaagagattactttacttttgaactctggggatcaattaattatga  862900                 <---------RVE1(1)       <---------------AGL15       --------->HSFB2a(2)       <---------HSFB2a(2)       --------------->AGL15      ----------------->AGL2                                                            --------->MYB52(2)      <-----------------AGL3                                                         <-------GAMYB --->TEIL        <---------CCA1(1)                                                  <---------MYB46(3) >YAB1----------------->AG <---------GLK1(2)                                       <---------TOE2(3) -ICU4<-----------------AGL2--------->GLK1(2)                   --------->ZAT2   <---------ANAC46   - ---YAB1        <---------ARR11(3)  <---------ETT(2)  <---------PCF5       <---------TOE2(3)  -------   acatgttttctaaaactggatattttgtagaatctctgtcgaaaaacaactattagggacctcatgagcttggaacaaaggttttgtggttagatgggct  863000                        <---------------AGL15          <---------ANAC58            <---------DAG2                 <-------TEIL<---------ANAC58                         <<<<<            <----------DOF2       <-------TEIL    <---------ICU4                               <----- --------->DOF2       <---------ICU4   <---------YAB1  <---------ANAC46          ------->TEIL<------- -->At4g35610        --------->ICU4  <---------At4g35610                <----------DOF2      --------   gagaaagaaacagactttttgtaatacttatataggttcttctgatacatagttatggcttaaacaaatttagactttttatgaacctattgtatagctc  863100  Previous    Next  AGI:  At5g03450.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G03750.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63019.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 858768    to: 862296    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g03452.1    Description:  pre-tRNA. tRNA-Phe (anticodon: GAA) Range:  from: 862396    to: 862468    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g03455.1    Description:  CDC25. Identical to Dual specificity phosphatase Cdc25 (CDC25) [Arabidopsis Thaliana] (GB:Q8GY31;GB:Q8LC90;GB:Q9LZE1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63018.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN65876.1); contains InterPro domain Rhodanese-like (InterPro:IPR001763) Range:  from: 862558    to: 864107    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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