Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         <---------ANAC58       <---------ANAC58   <----------DOF2                                                    ------->TEIL  <---------ICU4 ---------DOF2                                                     <---------ANAC55(2) -------DAG2                                                 --------->AHL20(2)     --------->YAB1 ->NtERF2                                                    <---------AHL20(2)    <---------YAB1 ----ALFIN1                                                 --------->AHL20(2)     --------->ICU4 --->RAP2.3(3)                            ------->TEIL   <----------DOF2       <-------GAMYB --->DEAR3(1)                          <---------REM1(1)<---------ANAC46    <---------ANAC46       -- -->ATERF1(1)                   <---------ZAT14         <---------ANAC58    <---------ANAC58  <------ --ATERF1(1)                    --------->ZAT14   --------->ATHB12 --------->ANAC55(2) <---------ICU4 >ANAC46      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     <---------ANAC58    <---------ANAC58 <-------   cctttctttgcttcttacctctgttttgcaactctccagtgatgaagcttaattagtggcttttaaattatgtaacttgggtgttataattagggccgtt  839500                                                                             <---------YAB1                                                                             <---------AHL20(2)                                                                             --------->AHL20(2)                                                                            <---------AHL20(1)                                                                            --------->AHL20(1)                                                               --------->AHL20(1)                                                               --------->AHL20(2)                                                               <---------AHL20(2)                   ---------->DOF2             <---------AHL20(2)  ----------->GT1          ---------      --------->ALFIN1                 --------->AHL20(2)     <---------AHL20(2)      <---------TOE2(3) -------->DOF2  <-------TEIL     ----------->RAV1(1)    <---------ZAT6      --------->AHL20(2) ---RAP2.6(3)  <---------------------WRI1   --------->TOE2(3) --------->AHL20(2)--------->ICU4 --MYB46(3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      ----------->GT1    --------->YAB1  ----------   ctaaaggagtgctggaggtgcaaaagtacaaggtccaacaattttttcttaaattttagagtaaaaaaattgtagaaatataatttttaagaaaaaagtt  839600                  <------MYB83                  <------MYB46(1)                 --------->MYB59                 <---------TOE2(3)                                --------->YAB1 <---------AHL20(2)            --------->ICU4                  <-------TEIL          --------->AHL20(2)       ----------->GT1           ----------->GT1          ----------->GT1        --------->YAB1    --------->MYB52(1)          --------->DAG2      <-----------GT1--------->AHL20(1)       <-------- >DAG2<----------ID1           --------->DAG2--------->ANAC55(2) <---------AHL20(2) --------->ZAT6 >DOF2--------->ANAC46        ---------->DOF2--------->YAB1----------->GT1       --------->AHL20(2)   tagaataaacggcaaaaattaggtttagaagaaaaaggtgaacacatacataatttacatgagttaaataatattagacttaattaaaactagatgtcat  839700                                               --------->MYB52(1)                                 <--      ---------->DOF2             --------->AHL20(2)                                              ---   --------->YAB1                 --------->YAB1                 --------->ANAC46               <---- ---HVH21             ---------->DOF2     ---------->DOF2   ------>NtERF2              --------->YAB1   gtctataacaaagtctatctaagtcaaagaaaccattaatatcccaaagtaactgaaattgacgcccaaaccacgactaagagaaaaaatcaaaaccctc  839800                              ------------>CBF                <---------ANAC58   ------->TEIL <---------ANAC58                                                                    - -------At4g35610         --------->AtMYB61             <---------ALFIN1                   ------>ZmHOX2a(1) ------>At4g35610      <-----------GT1                  --------->ZAT6              *TSS <----------- -------RAV1(2) <---------ANAC46                 <<<<<<<<<TBF1             --------->AHL20(2)      <-   agatgaatctagagggtttcgtttttcaccaaaacaatctctattctattcttcttcaacactgcaaaacttgagataaaaatagagtctttcctcttgt  839900                                           --------->ANAC58                            ------>NtERF2                                           --------->ANAC58                        <---------O2<-----                               --------->ZAT2                     --------->ANAC58 <---------bZIP60(1)            <---------At4g35610--------->At4g35610              <---------ANAC58   <---------bZIP60(2)    <----------DOF2            <---------At4g35610              <---------ANAC58----------->HVH21 --------->ID1       ------->TEIL      --------->ANAC58     --------->CCA1(2)   ----------->TGA1 -------------ANAC81<---------CCA1(2)  --------->ANAC58---------->DOF2   <-----------GT1       ------ ----------GT1<---------YAB1   <---------ZAT2 ----------->RAV1(1) --------->ANAC58 --------->bZIP60(1)   ttttctctttgttttgctgattgtatctcactaagctgaagaagcaaacaacaatagaaaagagatgcgagcaattcacatcgtgacgacgcgattgagc  840000                                                                                               <-----                                                                                               <-----                                                                                              -------                                                --------->ANAC58                             <-------                                                --------->ANAC58                        <---------ZAT2                                                --------->ANAC46                    ------>NtERF2   <----------DOF2                <---------ANAC46               --------->STY1(1)  --------->LBD16   <---------DAG2                 <---------ANAC58          -------->P  <---------DAG2 --------->ANAC58 ----At4g35610                    <---------ANAC58     --------->ZAT14  <----------DOF2--------->ANAC58 --->At4g35610                 <---------MYB52(1)------>NtERF2   <---------STY1(1) <---------ANAC46   tccagctttattaggcctgttcttcttgacttcgtttcttgttcgcctctacgccagttctctacccctaggcgctttatctgtgccgcgagcaaggtca  840100            <-----------RAV1(2)         --------->ANAC58         <---------At4g35610         <------MYB46(1)         --------->ANAC58         --------->bZIP60(2)         --------->At4g35610         <------MYB83                                                        ---------->DOF2       ===========================RAV                                        --------->MYB52(1)       <-----------RAV1(2)                                                  ------>ZmHOX2a(1)      <------NtERF2   --------->MYB52(2)                                 ------>ZmHOX2a(1)   <------ZmHOX2a(1)  <-----------RAV1(1)                                <---------------AGL15 ----WRKY12 ======================RAV                                --------->ARR14(2)             - ----WRKY38(1)        <---------MYB46(3)                             <---------ARR14(2)           --- -->WRKY18(1)    <-------TEIL                                       --------->WOX13(1)     <---------GLK1(1) ----HVH21<-----------HVH21   --------->ATHB12                   <-----------HVH21         --------->GLK1(1)   atggaggaggcaggtcaggttcgattgttgctccattggtagtgaatgaagaatttcagaacatcgatgtcaatcctcctaaaggaactcgtgatttccc  840200                    --------->ZAT2                    ----------->RAV1(2)                    <---------At4g35610                    --------->At4g35610                --------->ANAC58                --------->ANAC46                --------->ANAC58               <---------LBD16             <---------ARR14(2)             --------->ARR14(2)      <---------GLK1(1)      --------->GLK1(1)      --------->CCA1(2)      <----------TaMYB80     --------->ARR14(2)     ---------->TaMYB80     <---------ARR14(2)     <---------ARR11(3)     --------->ARR11(3)                       <-----------HVH21    <------ZmHOX2a(1) ------->GAMYB     ---------->DOF2         --------->ZAT6             <--------- ----->ZmHOX2a(1)   <---------ZAT2<---------ALFIN1             ------->TEIL            <------------- -------->RAV1(2)--------->LBD16 --------->MYB46(3)       <---------ANAC55(2)          <-------------   tcctgaggatatgcgactccgcaactggctcttcaaccacttcaaagaggtcagagaattacatgaactctatgttttgtttctgcaattcttcttttgg  840300                                                                                                   <-                                                                              <---------ANAC58     --                                                                              <---------ANAC58     <-                                                                         --------->MYB52(2)       <--                                                              <---------ARR11(3)                  <--                                    <----------DOF2           --------->ARR11(3)                  ---                         --------->DAG2               <---------ANAC58 <---------MYB52(1)     <------ -DOF2                 <---------MYB52(1)             <---------ANAC58<-------GAMYB          <------- ----AGL3             --------->LBD16          <---------AHL20(2)----------->HVH21    <------ZmHOX2a(1) ----AGL2 <---------YAB1---------->DOF2 <-----------GT1<----------DOF2--------->At5g28300    --------   ttcgatgaaattttgaatactgtccgtaaagtttgacacttttatctgtttattttgctttgaaggtctcacggttatttgggtatgaggaagtggattt  840400  Previous    Next  AGI:  At5g03406.1    Description:  ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding. similar to ATHRS1 (HISTIDYL-TRNA SYNTHETASE 1), histidine-tRNA ligase [Arabidopsis thaliana] (TAIR:AT3G46100.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO18198.1); contains InterPro domain Aminoacyl-tRNA synthetase, class II (G, H, P and S); (InterPro:IPR002314); contains InterPro domain Histidyl-tRNA synthetase; (InterPro:IPR015805); contains InterPro domain Aminoacyl-tRNA synthetase, class II; (InterPro:IPR006195) Range:  from: 839884    to: 841874    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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