Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                         <------ZmHOX2a(1)                                      ----------->GT1             --------->ARR14(2)      <---------TOE2(3)             --------->ARR11(3)--------->AHL20(2)             <---------ARR14(2)<---------AHL20(2)                              <----------DOF2        ---------->DOF2       --------->AHL20(2)      ------>MYB83          --------->GLK1(2) ----------->GT1      --------->WRKY38(1)             ------>MYB46(1)<---------HSFB2a(2) -------->DOF2   -------->P   <---------AHL20(2)    <---------MYB59  --------->HSFB2a(2) --->DOF2--------->DAG2       --------->YAB1      -------->P      <---------AHL20(2)    <---------AHL20(2)   gaaaagaaaaaaaagtatctaccattgactaattaaaataaggaaacttatctaccaaatttgagtattttttagaacaatctttttggtttaattccaa  774000                                                             ------>ZmHOX2a(2)                                                            <------ZmHOX2a(2)                                                            --------->CCA1(2)                                                           --------->GLK1(2)                                                           --------->ARR14(2)                                                           <---------ARR14(2)                                                           --------->ARR11(3)                                                     --------->YAB1                                                  -------->HAHB4                                                  <---------ICU4                                                  <--------ATHB1                                                  --------->YAB1                                                  <--------HAHB4                                                  --------->ATHB12                                                  --------->ATHB51                                                 <---------YAB1                                                 --------->ICU4                                --------->ICU4   <---------ATHB51                              ------>MYB46(1)    --------->AHL20(2)                              ------>MYB83   --------->AHL20(2)  ------->TEIL         ------>MYB46(1)    <---------MYB59----------->GT1 --------->ARR14(3)         ------>MYB83---------->DOF2     ---------->DOF2   <---------ARR11(3)                    <---       --------->TOE2(3) <------ZmHOX2a(1)--------->DAG2   <---------ARR14(3)                 <------       <---------MYB59--------->DAG2  <---------TOE2(3)    <---------AGP1         ------>ZmHOX2a(2)   aactctaaacctaattgttgggaaaaaggacctaatttttaagaaaagttaataattagaagatctgtatgtttttttttttgatccaagtttttatttc  774100                    --------->ARR11(3)                    <---------YAB1                 --------->AHL20(2)                    <---------YAB1<---------ARR11(3)              --------->YAB1                        --------->ICU4<----------DOF2           --------->YAB1                     <---------TOE2(3)<---------AHL20(2)    <----------DOF2 <---------ARR11(3)       ---------->DOF2<---------AHL20(2)                    <-- -------DOF2 <---------YAB1                 --------->AHL20(2) <-----------GT1<-----------RAV1(1) <-- -----GT1<-----------GT1                    --------->YAB1--------->ICU4<----------DOF2----------->GT1   ttttctctttttttcatgataaaatctatgtttttttagtctacaattaaagtaattgttattattttctttatctttttttgttgttgttgttaattcc  774200                                                              <---------ANAC58                                                     <---------AHL20(2)                                                    <---------AHL20(2)                                                    --------->AHL20(1)           <-----------GT1                          <---------AHL20(1) -------DAG2  ------->GAMYB                         --------->AHL20(2) --------DOF2 --------->ANAC46         <---------MYB52(1)     <---------ANAC58     --------->YAB1   -   ctttttttttttttaacagcaacttcttaaaaaaaaaaacagttgggccttgaatttatttcaggcctgcgttattaagcccagataataactcaaaaca  774300                                               ----------->GT1                                               --------->ANAC46                        --------->LBD16        <---------At4g35610                       --------->ANAC46        --------->ANAC55(2)                      --------->TOE2(2)       <---------TOE2(3)                      --------->TOE1(2)       <---------TOE1(3)                <---------KAN4(2)       <---------MYB52(1)                <------------CBF          *TSS             --------->LBD16        --------->MYB52(1)                  <---------YAB1             --           <---------LBD16     --------->AHL20(2)                  --------->CCA1(2)             <--- -------->AHL20(2)    <---------LBD16<---------LBD16        >>>>>>>>>TBF1<------ZmHOX2a(1)    <------   aaaaaaatgttgaaccggaataaacccgcgagattaaatgccggttttcaggtaacatagaagaagaatatatgaggattgaagaagtattcaagaggcg  774400                                                        --------->GLK1(1)                                                        <---------GLK1(1)                                                    --------->ANAC58            --------->ARR11(3)                                          --------->At4g35610             --------->YAB1 <---------ARR11(3)     <-----------GT1            ------>ZmHOX2a(1)   --------->ANAC58   <---------------AGL15 ---------->CBF             <-----------GT1        <---------LBD16     --------------->AGL15  <------ ---NtERF2       --------->ARR11(3)       <---------At4g35610     <----------DOF2       <------ZmHOX2a(1) ---LBD16        <---------ARR11(3)    <---------At4g35610  <----------DOF2     <---------ARR11(3)   gaacaattcacaagtccaagagcttaaatttctcctcactcttctgctacagactcggaactctttctctttgctaaaataagatgttcaggatttttgt  774500                                                                  ------>MYB46(1)                                                                  ------>MYB83                                                                --------->AtMYB61                                                                <---------ALFIN1              ------->TEIL                                      --------->MYB46(3) ----------->HVH21                                              <---------MYB111(2)        <--------- <---------ETT(1)                             <---------ZAT14   <---------MYB111(1)       <---------ANAC58 --------->ANAC46   <---------ALFIN1          --------->ZAT14   <---------MYB55(2)        <---------ANAC58 -----RAV1(1)<---------CCA1(2)            <-----------GT1     --------->ANAC46            <---------ANAC46   tgcccgacaattcatgtatctcacactctctctcttctctgttcttactactctgttacattaccaccaactcaagactttcttccacaatggcgtttat  774600                     <----------DOF2                   --------->HSFC1(2)                   --------->HSFB2a(1)    --------->TOE1(2)                   <---------HSFC1(2)    ----------->RAV1(2)                                       --            <---------ARR14(2)         <---------ALFIN1                                          <--- <---------O2   --------->LBD16     ----------------->AGL1                                     <----- -DOF2      --------->ARR14(2)    <----------ID1            <---------AtLEC2              <----------DOF2   gagacttggctccaaatccgaagctttccatcgtgaaggccaaacctggtattctttcttctgcattgaattagactaatcgacttataagtctttgttt  774700         <------ZmHOX2a(2)     --------->HSFB2a(2)     <---------HSFB2a(2)     --------->DOF5.7(2) --------->ARR14(2)          <---------MYB52(1)             <---------ARR11(3) <---------ARR14(2)        <---------ANAC46            <---------ATHB12                             < ------->LBD16             ----------->GT1        --------->ANAC55(2)                            ---- ------LBD16 <---------ARR14(2)              <---------AHL20(2)                                  <--- ------GT1   --------->ARR14(2)             --------->AHL20(2)      <----------DOF2              ----   ccggtttcgagatcgaattctcttcaatgtcgttaatttctcttgattttatatgtaatcaagctctcatctttttgttgaaatcgaaatgggctcttcc  774800                                                                                       <---------SPL7          --------->ATHB12                                                           <---------------AtSPL3       --------->MYB52(2)                                                            <---------------AtSPL8     <---------MYB52(1)               <---------AHL20(2)              --------->bZIP60(1)--------->SPL7    --------->TOE2(3)          <------ZmHOX2a(2)                   ----------->HVH21<---------------- ---------GLK1(2)             --------->ARR11(3)             --------->ATHB12<---------ICU4         < -->ZmHOX2a(1)                <---------ARR11(3)           <---------WOX13(1)--------->YAB1       --- ------HSFB2a(2)             --------->YAB1              --------->ATHB12   <---------ATHB12    ----- ----->HSFB2a(2)          ---------->DOF2               <---------YAB1<---------bZIP60(1)--------->SPL1(2)   tagaatcgttagttattgatgcaagtttcaaagatcatattttttttggaatttagctctgattgatttgtgacatcaataatcaattttgtacggacaa  774900  Previous    Next  AGI:  At5g03250.1    Description:  phototropic-responsive NPH3 family protein. similar to phototropic-responsive NPH3 family protein [Arabidopsis thaliana] (TAIR:AT1G30440.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68937.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO18159.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN72130.1); contains InterPro domain NPH3; (InterPro:IPR004249); contains InterPro domain BTB/POZ fold; (InterPro:IPR011333); contains InterPro domain BTB/POZ-like; (InterPro:IPR000210) Range:  from: 774400    to: 777047    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version