Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                       <---------GLK1(1)                                     --------->GLK1(1)                                    <---------ARR14(2)                                <---------LBD16                                ------>NtERF2                              <---------LBD16                 <---------At4g35610--------->ARR14(2)             *TSS--------->ZAT2 --------->LBD16                                              <-------         --------->CCA1(2)  --------->AtMYB61            --------->WOX13(1)                <---------AHL20(2) ------->HVH21   <---------ZAT2 <---------At4g35610    <---------ATHB12                    --------->AHL20(2) ---->At5g28300 --------->GLK1(2) --------->LBD16      ------------>CBF             <----------DOF2   tgactcttaatatatgcgaagctggttctacctccgcggatttctaatacttggcccatcaattagtaggcccattaagtcatgggcttttaaaaaattg  694600                                                                                             --------                                                                                             <-------                                                                                          <---------ANAC55(2)                                                                                          --------->ANAC46                                                                        --------->ANAC58  --------->ANAC58   <------------CBF       <----------DOF2                               --------->ANAC58  --------->ANAC55(2)  --------->YAB1     <---------ICU4             --------->ZAT6    --------->MYB52(1)      --------->ANAC58  --------->ATHB51  <---------ATHB12      --------->At4g35610   ------>ZmHOX2a(2)         --------->ANAC55(1) <---------YAB1     <---------YAB1     ---------->DOF2        <---------AGP1           <-------TEIL -----CBF         --------->YAB1  <----------DOF2         <---------MYB52(1)   --------->At4g35610  <   actataattgtctcaacttctcatcattcttttgggcttttaaaagctgaactctaaaccgttggatctaatggacgcattagatgacatacacgtatac  694700                                                               <---------ARR14(2)                                                            --------->ANAC55(1)                                                            --------->ANAC58                                                            --------->HSFB2a(2)                                                            <---------HSFB2a(2)                                                            --------->ANAC55(2)                                                            --------->ANAC58                                                            --------->ANAC46                                                           <---------LBD16                                                 <---------ANAC55(2)                                    --------->O2 --------->ANAC58                                   <                                    --------->bZIP60(2)   --------->MYB52(1)                        -                                    --------->TGA1a      ------>ZmHOX2a(1)                          -                                  <---------ALFIN1--------->LBD16                            ========                                  ----------->RAV1(1)  <---------ICU4                     --------->ANAC58         <---------AHL20(2)     --------->LBD16  --------->ANAC46--------->DEAR3(2)<---------------AtSPL8         --------->AHL20(2)     ------>NtERF2<---------ARR14(2)--------->ARR14(2)====================         <---------ICU4        --------->ANAC58  --------->ANAC55(2)         ----------->GT1 --------        --------->AHL20(2)     --------->ANAC46  --------->ANAC55(1)    ----------->HVH21 --------->ANAC58 ->ARR14(2)                    --------->ANAC58  --------->ANAC58--------->ATERF1(1) <----------ID1 < --ARR14(2)           <---------ICU4--------->REM1(1) --------->ICU4   --------->At5g28300--------->ANAC46 ---------At4g35610  --------->AHL20(2)  --------->At4g35610<---------ANAC55(2)  ---------->DOF2-----   tctgatgctaattaatactgggaataaatacttccgccacatcagcataacccgtaatccttacggaaccggctgtaacaggtaaaagggacacacaaag  694800             ----------->RAV1(1)            --------->ANAC58            --------->TGA1a            --------->ANAC58            --------->ANAC46            =============================================MYC_MYB            ----------->HVH21           --------->SPL7                       --------->MYB46(3)      <-------MYC3         <------NtERF2                          <------------AtMYB77    ------->MYC3        --------->ANAC58                      --------->MYB52(1)       <---------O2        --------->ANAC58                   --------->ANAC46            <---------ANAC46       <---------ATERF1(2)               <---------ALFIN1              --------->O2       --------->ATERF1(2)              --------->MYB46(3)            ------>MYB46(1) ---------ZAT14                        ------>NtERF2                  ------>MYB83 -------->ZAT18                       --------->ANAC46       ----------->RAV1(1) -------->ZAT14                       <---------ALFIN1      --------->ANAC58 =====================bZIP_DOF       --------->MYB46(3)     --------->bZIP60(2) =====================bZIP_DOF     <---------TCP20          --------->ANAC46                   ------ -->DOF2--------->ANAC46         <-----------HVH21          --------->ANAC58      --------->YAB1    - ---------ZAT18  <-----------HVH21 --------->PCF2------->GAMYB       --------->MYB52(1)   <---------MYB52(1) ---->DAG2<---------ALFIN1       <---------ATERF1(1)<---------ETT(2)--------->AtMYB61     --------->DOF5.7(2)   agtgcactgcccgcacgacagtcactggttcagcccgtccccaccacttaaccgtcgataccacgacagaccaacgtggacaaatcacaaccgtttactt  694900                                                     ---------->DOF2                                                --------->ARR14(2)                                           --------->ZAT2                                           --------->At4g35610              >>>>>>>>>>>>>>>>>LFY         <---------At4g35610                                  <----         --------->YAB1                    <---------ZAT2                                       <<<<<        --------->ICU4                    ------>NtERF2                                 --------->ARR14(2)    ------------>CBF                     <-----------RAV1(2)                            <---------ARR14(2)  --------->DAG2                        --------->ATERF1(1)                          --------->HSFB2a(2) --------->DAG2                   ---------->DOF2   --------->LBD16                  <---------HSFB2a(2) --------->AGL15   --------->ALFIN1   --------->ANAC46     <------ZmHOX2a(1)  ---------->DOF2 <------ --------->DOF2------>ZmHOX2a(2)<---------YAB1  <---------ARR14(2) *TSS  ---------->DOF2<---------GLK1(2)   caaaaaggcaattttgatccagtggtccatgtttattaatgcgccagctaaatccgaaagaggaagagagagagtcaaagaaaagctccagaacctcgtc  695000    <------NtERF2    ------>NtERF2   <---------SPL7   --------->ZAT18                                                  ======================bZIP_DOF  <---------ANAC58                                                  --------->TGA1a              <---  <---------ANAC58                       <------NtERF2             ------->TEIL                  ----  <---------ANAC46                    <------ZmHOX2a(1)      <----------ID1     --------->DAG2   <--- <---------LBD16                --------->ARR14(2)         ===================bZIP_DOF           ---- -----WRKY12         --------->DAG2<-----------RAV1(2)     ---------->DOF2     ---------->DOF2  ----- <<<<WRKY18         ---------->DOF2<---------LBD16 --------->GLK1(2)<---------TGA1a    --------->At4g35610 -----HVH21      --------->YAB1 <---------ARR14(2) <---------ARR14(2) ----------->HVH21<---------At4g35610   aatggcggactgggatttttcataaagccagtcaaatccaggaggcgatggagaatattgaaaaagacgaacgtgacaaaaaaaagtttagctgaagaat  695100        <-------TEIL       --------->ARR14(1)                              ----------->GT1       --------->CCA1(2)                               <------MYB46(1)      --------->ARR14(2)                        <-----------HVH21      <---------ARR14(2)                        <-----------TGA1      --------->ARR11(1)                       --------->ANAC58 ------AHL20(1)                                --------->ANAC46 ----->AHL20(1)                                --------->ANAC58 ------AHL20(2)                      <---------At4g35610                           <----------DOF2 ----->AHL20(2)                      <---------ZAT2    <------MYB83          <----------DOF2--------- ---->AHL20(2)       <---------MYB52(1)        --------->bZIP60(2)      ---------->ID1      <--------   aaattgaagattcgaatcaaaccattagtcttgtgtcgaagctgtttctacgtcatttggtaagataaacttttgtctcctttcgctttcttaagggaaa  695200                                               <----------ID1           --------->ANAC58               <---------MYB52(1)              ----------->GT1          --------->ANAC46         --------->ATHB12                    ---------->DOF2            --------->ANAC58      <------ ---------->DOF2                      --------->ARR11(3)    --------->At4g35610   --------->DAG2 -->GT1 <---------YAB1             --------->LBD16>>>>>>>>>>GT-3b     <-----------GT1 <-----------HVH21 --ID1--------->CCA1(2) <---------DAG2<---------ARR11(3)    <---------ZAT2       ---------->DOF2<----   aaaaaaagagatgattcgttattccaatttttgtttccgagattttaaaaagaaaaatagggagcttgaatttcacgctatgtaaaagtgtcactcgtag  695300                                                         <------MYB83                                                         <------MYB46(1)                                                         <---------MYB46(3)                                                         <---------DEAR3(2)                                        --------->ARR14(2)                  <---------ARR14(2)                               <---------------AtSPL8  <--------P           --------->ARR14(2)                        --------->AHL20(2)       --------->REM1(2)      <-------TEIL <---------CCA1(2)      <---------AHL20(2)       --------->ZAT14    <---------TOE2(3) ---CCA1(2)  <---------GLK1(2) ------->TEIL      <---------ZAT14    <---------TOE1(3) -----At4g35610     --------------->AGL15       ----------->HVH21   --------->MYB59        <------ZmHOX2a(1)   ctcatttctctctctgattcttctatataaatgaatgtacaggttttgctgtgaagagttggttcgggtttaggttcggattgggaagatggaggagatt  695400                                                                                    --------->At4g35610                                                                                    <------NtERF2                                                                                    --------->ATERF1(1)                                                                                   ------>NtERF2                                                                                   <---------DEAR3(2)                                                                                   <---------ERF1                                                                                   <---------MYB46(3)                                                                                   <---------ATERF1(1)                                                                                   <---------RAP2.3(1)                                                                                  <---------ANAC46                                                                                  <---------DEAR3(1)               <---------ANAC46                                                   <---------RAP2.3(2)               <-----------RAV1(2)                                                <---------RAP2.6(2)          <---------ANAC58                 <---------LBD16         --------->DEAR3(1)          --------->O2                     <------NtERF2       <---------ABI4(2)------->GAMYB          <---------ANAC58                ------>NtERF2 ----------->HVH21       <---------RAP2.3(1)          <---------TGA1a                 <---------RAP2.3(1)  --------->ZAT2 <---------At5g28300----          <---------O2                   --------->ANAC46 <---------LBD16    --------->MYB52(1) <----          --------->TGA1a   <---------ANAC58       <---------YAB1  --------->MYB46(3)          ------  <---------ANAC58          <---------ANAC58 --------->LBD16   <---------ZAT2<-----------GT1   <-----  <---------ANAC58    <---------ZAT6  --------->WRKY12--------->CCA1(2)   <----------DOF2     <------ <------ZmHOX2a(1)<------ZmHOX2a(1)   ----------->HVH21--------->SPL7 <------ZmHOX2a(2)  ---------->DOF2   agaggagtgcctacgtggcaggaagagttagcgagcctagttgacgccggattacgatacgacggagcaccgatcgatttaacggcggctacaaagagat  695500  Previous    Next  AGI:  At5g02960.1    Description:  40S ribosomal protein S23 (RPS23B). Identical to 40S ribosomal protein S23-2 (RPS23B) [Arabidopsis Thaliana] (GB:P49201;GB:Q9LYY9); similar to 40S ribosomal protein S23 (RPS23A) [Arabidopsis thaliana] (TAIR:AT3G09680.1); similar to Os01g0834500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044720.1); similar to hypothetical protein OsJ_003884 [Oryza sativa (japonica cultivar-group)] (GB:EAZ14059.1); similar to unknown [Solanum tuberosum] (GB:ABB16993.1); contains InterPro domain Ribosomal protein S12/S23; (InterPro:IPR006032); contains InterPro domain Ribosomal protein S23, eukaryotic/archaeal; (InterPro:IPR005680); contains InterPro do Range:  from: 693077    to: 694513    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g02970.1    Description:  hydrolase, alpha/beta fold family protein. similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT3G09690.2); similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT3G09690.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO18113.1); contains InterPro domain Alpha/beta hydrolase fold-1 (InterPro:IPR000073) Range:  from: 694967    to: 697635    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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