Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                             <---------At4g35610                           --------->At4g35610     <---------GLK1(2)                          -------                         --------->ZAT18           --------->ARR11(3)                         <------                         <---------ZAT18           <---------ARR14(2)                  -------->P<<<<    --------->ZAT6   --------->DAG2                --------->ARR14(2)                 <-----------GT1 ------>ARR11(3)    ---------->DOF2              ----------->ARR10    --------->AHL20(2) --------->YAB1 -------ARR11(3) --------->At4g35610 --------->TOE1(2)     ---------->DOF2            --------->WOX13(1)   gatttatctctaatacatcagcaaaagtgagcttcaaaacccaagagaccatagatactcatacagcgaattttaaatctccagttatcaaccatactag  694100                                    --------->ARR14(2)                           --------->ANAC58                                    <---------ARR14(2)                --------->LBD16                                    <---------ARR11(3)               <---------HSFB2a(2)                         --------->GLK1(2)                           --------->HSFB2a(2)   --------->LBD16   --------->ANAC46 ------>ZmHOX2a(2)           <---------ARR14(2) -->HSFB2a(2)        <-----------GT1--------->ARR11(3)            --------->ARR14(2) ---HSFB2a(2)      <-----------GT1  <---------AGP1               --------->GLK1(1)              ----- <<<ZML2 --------->At4g35610       <---------CCA1(2)           --------->YAB1    --------->ANAC58   aactccagagtagctcaaaatttacacaatctattgtggatctatacataaaaaacatttagcaaacatatccagaaatgaagacgcatttgctatagaa  694200                                                                                               ------                                                                                         <---------ICU4                     --------->YAB1                                 <---------ZAT18     --------->ICU4                    <<<<<<<<<ARR2                                 --------->At4g35610   <---------YAB1                    <---------ATHB12--------->ANAC55(1)           <---------ZAT2    ------>ZmHOX2a(1)        --------->YAB1              <---------ANAC55(2)           --------->ZAT14  --------->TOE2(3)       <---------ATHB12             ----------->GT1               --------->ZAT2--------->GLK1(2)     --------->WOX13(1)---------->DOF2 <-----------GT1            <---------At4g35610 --------->YAB1 ---->GLK1(2)  --------->TOE2(3)    --------->ANAC55(2)         --------->ANAC46--------->ARR14(2)   tcagttccaatcaaaaaccacaatcaaaagtcgaaaacatgtaacaatttcaaacaaaaaaaaaacacagcagactctatagaatccttcataattcatg  694300                                                                  ------>ZmHOX2a(2)                                                                 <------ZmHOX2a(2)                                                                 =================HOX2a_HOX2a                                                                --------->ARR11(3)                                                                --------->AGP1                                                                <---------AGP1                                                           =============HOX2a_HOX2a                                                           <------ZmHOX2a(1)                   <-----                                                      --------->ANAC58          --------------->AtSPL8                                                      --------->ANAC58          --------------->AtSPL3                                                      --------->ANAC46     <------ZmHOX2a(1)  <------                                                 ========================HOX2a_HOX2a --------->ANAC58                          --------->ANAC58       =======================HOX2a_HOX2a  --------->ANAC58                          --------->ANAC58       <------ZmHOX2a(1)================HOX2a_HOX2a -------      ----------->GT1 ---------->DOF2         --------->CCA1(2) <---------ARR11(3)  ------->TEIL --->AtLEC2    --------->At4g35610     --------->CCA1(2)   ==============HOX2a_HOX2a--------->SPL7   gaaacagcaagtgaatcagataaataaaacgctaaacagagaaatgagataggaacacgaaggatagatctaatagaggagaaacgtaccccatgtttgt  694400                     ---------->DOF2                  ------->GAMYB                                   --------->ZAT2             <------ZmHOX2a(2)                                    --------->At4g35610             ===============================HOX2a_HOX2a           <---------At4g35610     <------ZmHOX2a(1)                           <---------YAB1 <---------RAP2.6(2)     ===============HOX2a_HOX2a                --------->YAB1  <---------At4g35610 --GAMYB---------->DOF2                     ---------->DOF2 ---------->DOF2 ---MYB46(3)<---------ARR11(3)       <------ZmHOX2a(1)  --------->ARR11(3)   --------->TOE2(3)   ---- -->MYB52(2)--------->ARR11(3)    <---------AtLEC2      <---------ARR11(3)   --------->TOE1(3)  -----   tgatggaggagaaagatcaacagcaaagagctatttgcaggaagcacaaagatgataagctcttaagcggctgagaaaaccctaaacctagtgaaggcag  694500                                     --------->GLK1(1)                                     <---------GLK1(1)                                    <---------ARR14(2)                                ------>NtERF2                                --------->LBD16                              <---------LBD16                 <---------ZAT2 <---------At4g35610             *TSS--------->ZAT2 <---------LBD16                                              <-------         --------->CCA1(2)  --------->AtMYB61            --------->WOX13(1)                <---------AHL20(2) ------->HVH21   <---------At4g35610--------->ARR14(2) <---------ATHB12                    --------->AHL20(2) ---->At5g28300 --------->GLK1(2) --------->LBD16      ------------>CBF             <----------DOF2   tgactcttaatatatgcgaagctggttctacctccgcggatttctaatacttggcccatcaattagtaggcccattaagtcatgggcttttaaaaaattg  694600                                                                                             <-------                                                                                             --------                                                                                          --------->ANAC55(2)                                                                                          --------->ANAC55(1)                                                                        --------->ANAC58  <---------ANAC55(2)   <------------CBF       <----------DOF2                               --------->ANAC58  --------->ANAC46  --------->ATHB51   <---------ICU4             --------->ZAT6    --------->MYB52(1)      --------->ANAC58  --------->YAB1    <---------ATHB12      --------->At4g35610   ------>ZmHOX2a(2)         --------->ANAC58 <---------YAB1     <---------YAB1     ---------->DOF2        <---------AGP1           <-------TEIL -----CBF         --------->YAB1  <----------DOF2         <---------MYB52(1)   --------->At4g35610  <   actataattgtctcaacttctcatcattcttttgggcttttaaaagctgaactctaaaccgttggatctaatggacgcattagatgacatacacgtatac  694700                                                               --------->ARR14(2)                                                            --------->ANAC46                                                            --------->ANAC55(2)                                                            <---------ANAC55(2)                                                            <---------HSFB2a(2)                                                            --------->ANAC55(1)                                                            --------->ANAC58                                                            --------->ANAC58                                                           <---------LBD16                                                 --------->ANAC58                                    --------->O2 --------->ANAC46                                   -                                    --------->TGA1a       --------->MYB52(1)                        <                                    --------->REM1(1)    ------>ZmHOX2a(1)                          <                                  ----------->RAV1(1) --------->ICU4                         --------                                  <---------ALFIN1--------->LBD16--------->ATERF1(1)      --------->ANAC58         <---------AHL20(2)     ------>NtERF2<---------ARR14(2)<---------ARR14(2)    <----------ID1 -         --------->AHL20(2)     --------->LBD16  --------->ANAC58--------->DEAR3(2)<---------------AtSPL8         <---------ICU4        --------->ANAC46  <---------ANAC55(2)             ---------->DOF2-----        --------->AHL20(2)     --------->ANAC58  --------->ANAC55(2)         ----------->GT1 ======== --ARR14(2)                    --------->ANAC58  --------->ANAC55(1)    ----------->HVH21 --------->ANAC58 ->ARR14(2)           <---------ICU4--------->bZIP60(2)<---------ICU4  --------->At5g28300--------->ANAC46 ---------At4g35610  --------->AHL20(2)  --------->At4g35610--------->HSFB2a(2)  ====================   tctgatgctaattaatactgggaataaatacttccgccacatcagcataacccgtaatccttacggaaccggctgtaacaggtaaaagggacacacaaag  694800             ----------->RAV1(1)            --------->TGA1a            =============================================MYC_MYB            ----------->HVH21            --------->ANAC58            --------->ANAC58            --------->ANAC46           --------->SPL7                       <------------AtMYB77    <-------MYC3         <------NtERF2                          --------->MYB46(3)      ------->MYC3        --------->ANAC58                      --------->MYB52(1)       --------->O2        --------->ANAC58                   --------->ANAC46            <---------O2       --------->ATERF1(2)               <---------ALFIN1              <---------ANAC46       <---------ATERF1(2)              --------->MYB46(3)            ------>MYB83 -------->ZAT14                        ------>NtERF2                  ------>MYB46(1) ---------ZAT14                       <---------ALFIN1       ----------->RAV1(1) ---------ZAT18                       --------->ANAC46      --------->ANAC58 -->DOF2--------->ANAC46             --------->MYB46(3)     --------->ANAC46 -------->ZAT18  <-----------HVH21 --------->PCF2------->GAMYB       --------->MYB52(1)        ------ ---->DAG2<---------ALFIN1         <---------TCP20          --------->ANAC58              <---------MYB52(1) =====================bZIP_DOF   <---------ATERF1(1)        --------->bZIP60(2)   --------->YAB1    - =====================bZIP_DOF   <-----------HVH21  <---------ETT(2)--------->AtMYB61     --------->DOF5.7(2)   agtgcactgcccgcacgacagtcactggttcagcccgtccccaccacttaaccgtcgataccacgacagaccaacgtggacaaatcacaaccgtttactt  694900                                                     ---------->DOF2                                                <---------ARR14(2)                                           <---------At4g35610                                           --------->At4g35610              >>>>>>>>>>>>>>>>>LFY         --------->ZAT2                                       <<<<<         --------->YAB1                    <---------ZAT2                                       <----        --------->ICU4                    ------>NtERF2                                 <---------ARR14(2)    ------------>CBF                     <-----------RAV1(2)                            --------->ARR14(2)  --------->DAG2                        --------->ATERF1(1)                          <---------HSFB2a(2) --------->DAG2                   ---------->DOF2   --------->LBD16                  --------->HSFB2a(2) --------->AGL15   --------->ALFIN1   --------->ANAC46     <------ZmHOX2a(1)  ---------->DOF2 <------ --------->DOF2------>ZmHOX2a(2)<---------YAB1  --------->ARR14(2) *TSS  ---------->DOF2<---------GLK1(2)   caaaaaggcaattttgatccagtggtccatgtttattaatgcgccagctaaatccgaaagaggaagagagagagtcaaagaaaagctccagaacctcgtc  695000  Previous    Next  AGI:  At5g02960.1    Description:  40S ribosomal protein S23 (RPS23B). Identical to 40S ribosomal protein S23-2 (RPS23B) [Arabidopsis Thaliana] (GB:P49201;GB:Q9LYY9); similar to 40S ribosomal protein S23 (RPS23A) [Arabidopsis thaliana] (TAIR:AT3G09680.1); similar to Os01g0834500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044720.1); similar to hypothetical protein OsJ_003884 [Oryza sativa (japonica cultivar-group)] (GB:EAZ14059.1); similar to unknown [Solanum tuberosum] (GB:ABB16993.1); contains InterPro domain Ribosomal protein S12/S23; (InterPro:IPR006032); contains InterPro domain Ribosomal protein S23, eukaryotic/archaeal; (InterPro:IPR005680); contains InterPro do Range:  from: 693077    to: 694513    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g02970.1    Description:  hydrolase, alpha/beta fold family protein. similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT3G09690.2); similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT3G09690.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO18113.1); contains InterPro domain Alpha/beta hydrolase fold-1 (InterPro:IPR000073) Range:  from: 694967    to: 697635    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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