Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        <---------AHL20(2)                                    <---------AHL20(2)                  --------->LBD16   --------->AHL20(2)                 <---------LBD16  <---------AHL20(2) <---------WRKY38(1)          <---------AHL20(2) -------->WRKY18(1)     ----------->GT1                              <---------YAB1 ----------HVH21 --------->LBD16  --------->AHL20(2)    <---------HSFB2a(2)        <----------DOF2 -------ZAP1    <---------ANAC46--------->AHL20(2)      --------->HSFB2a(2)     <-----------GT1 --->ARR14(2)   <---------LBD16 <---------AHL20(2)      <---------HSFC1(1)      <---------AHL20(2) ----ARR14(2)  <---------LBD16--------->AHL20(2)        --------->HSFC1(1)--------->YAB1            -   cggtcaaaaccagtttttccggggaatggtatatatatatatatatgagtcaatgtgtctagaaaatggttaccaatggtattttctttttgatatttgt  657400                                                                           <---------MYB52(2)                                                                          <---------ZAT2                                                                          <------NtERF2                                                                          --------->At4g35610                                                                     --------->ANAC58                                                                     --------->ANAC58                                                         <---------ZAT2   <---------At4g35610                                                         --------->ZAT2   --------->ZAT2                                                ----------->GT1      --------->ANAC46            <----------DOF2                --------->ANAC58 --------->ANAC58         <-----------GT1<------MYB83       --------->ANAC58 --------->ANAC58     --------->At5g28300      --------------->AtSPL8        <-----------GT1      --------->At4g35610   --------->ZAT6 ----->ZmHOX2a(1)       <------MYB46(1)  ---------->DOF2 <---------At4g35610 --------->MYB52(1)<-----   tcctgtgttttgtactttctctgatttggttatctatttaaccaaaagcaatgtaacacagctagcaaaccaaggcagctaacagtaaatgccaacgtcc  657500                                                                                 --------->SPL7                                                                                --------->MYB52(1)---                                                                                ------>MYB46(1) -----                                                         --------->LBD16        ------>MYB83   <-----                           <---------YAB1              <---------LBD16  <------NtERF2         -------                     ---------->ID1                ---------->DOF2     <---------HSFB2a(2)  <--------                   <-----------RAV1(1)       <---------ARR11(3)       <---------LBD16   <---------AtMYB61 --TEIL        <----------DOF2          --------->MYB46(3)     --------->ZAT6 <---------MYB59 <------   atgttattgtctcgagcctttttgttgttcttattgtcaataaccaatatccctaaacccggttaacaatagtcgggaaaccgaaccgtattggtggatc  657600                                                                                          <----------                                                                                        ------>MYB83         --------->ANAC58                                                               ------>MYB46(1)         --------->ANAC58                                                             <---------MYB59       ---------->DOF2                                                              ------->TEIL     <---------ATHB12                                                          --------->ZAT2 --->ZmHOX2a(1)                                                                ----------->RAV1(2) ->ZmHOX2a(2)                                                                  <---------ZAT2 -ZmHOX2a(2)                                                                   <---------At4g35610  - -->ARR14(2)                             ------>MYB46(1)                       --------->At4g35610<-- -MYB46(3)               --------->CCA1(2)                                    <-----------RAV1(1) <-- ---ARR14(2)          ----------->GT1    ------>MYB83  ----------->GT1     --------->GLK1(2)     <---   ctatcaaatcaaagcaaaccagaacagataaacgaattgaaccaaatcagagctaaaccgaaaaaatgcaacttgaaattctgctggacctacattgggc  657700                             --------->At5g28300                     <----------DOF2   <---------ALFIN1    <---------ANAC46        ----------->GT1                  --------->ICU4         *TSS   ------>NtERF2           <---------TOE2(3)               -------->HAHB4         --------->DEAR3(1) --CBF----------->GT1     <---------LBD16                 <---------ATHB51    <---------ZAT14 -------->RAP2.6(3)       <---------At5g28300             --------->ICU4      --------->ZAT14 --------DOF2            <-----------GT1                --------->YAB1        <---------ZAT18 -------SPL7             --------->MYB52(1)--------->ANAC58<---------ICU4     --------->ZAT18 -------DOF2       ------------>CBF        --------->ANAC58--------->YAB1---------->DOF2   ctttcggcctgtataaatttccacaatttacggtaatacccttgtaagaaaccctaagtaataatgatgtgctttaaaagcgcacagcctcacttccaaa  657800                                              <---------ALFIN1                                             --------->ANAC58                                             --------->ANAC58                                             ----------->HVH21                                           <---------ALFIN1                                          ------>NtERF2                                          <---------SPL7                                         --------->RAP2.3(2)                                         --------->DEAR3(1)                                        --------->RAP2.3(1)                                        --------->ATERF1(1)                                        <------NtERF2                                        --------->ORA47(2)                                       --------->At4g35610                                       <---------ATERF1(1)                                       ------>NtERF2                                      --------->RAP2.3(2)                                      --------->RAP2.6(2)                                      --------->ANAC46                                      ------->GAMYB                                      --------->RAP2.3(3)                                      --------->DEAR3(1)                                      <---------ATERF1(2)                                      --------->ATERF1(2)                                     --------->MYB46(3)                                     --------->ERF1                                               ---                                     --------->RAP2.3(1)                        =====================                                     --------->DEAR3(2)                         <---------bZIP60(1) <                                     --------->ATERF1(1)                    <-----------HVH21   <<<<<                                    <---------ATERF1(1)                   <---------DEAR3(1)    <<<<<                                    --------->At4g35610            <------ZmHOX2a(1)        <--------                                    <---------ZAT2                 ================================HOX2a_HOX2a                                    --------->ZAT2          <-----------HVH21   <---------TGA1a <<<<<                                    <---------At4g35610     --------->ORA47(1)  --------->bZIP60(1) -                                  ---------->CDC5        <---------At5g28300--------->At5g28300 <<<<<                                  <-----------RAV1(2) <-----------HVH21 --------->MYB52(1)  <------ZmHOX2a(2)                          <---------MYB46(3)--------->SPL7 --------->DEAR3(1)----------->HVH21-------                          --------->ATHB12<------NtERF2 <-----------GT1----------->HVH21 --------->DEAR3(1)   cccttcgtttacagcaaaaaatcgaaaatggttgcctcagccgccgcacgacctcttgtcaccgtccaaggacttgacggtgacatgagcaccgatcaat  657900                    <---------RAP2.6(3)                    <-----------HVH21                   <---------bZIP60(1)          <----------DOF2          <---------DAG2      <---------MYB52(1)                                                                <------NtERF2     <-----------HVH21    --------->RAP2.6(3)                                           <---------MYB52(1)     <-----------TGA1--------->TGA2(2)                                                  --------->ATERF1(1)    --------->ANAC46<-----------TGA1                                                   <---------RAP2.6(3)    --------->DEAR3(1)  <---------YAB1                                                 <-----------TGA1    --------->DREB2C(2) --------->ICU4                                                <---------ATERF1(2) --------->AtMYB61 <---------TGA2(1)                                                  --------->RAP2.3(3) --------->DEAR3(1)--------->ANAC58                                                   --------->ATERF1(2) <---------ALFIN1  --------->bZIP60(1)                                                --------->RAP2.3(2) ------>ANAC46     --------->ANAC46                                                 --------->At4g35610 ====================bZIP_DOF<---------At4g35610                       <---------ARR14(2)     <------ ---------MYB55(2) --------->TGA1a                                     --------->ARR14(2)    <------- <<<<GATA-1        --------->bZIP60(2)                                <---------CCA1(2)<-----------HVH21 <<<<GATA-4        --------->ANAC58                              ------>NtERF2     ------->GAMYB ---- -ATHB12  ===================bZIP_DOF          --------------------->WRI1    ----------->RAV1(1) ---- <<<<GATA-2        --------->O2              <<<<<<<GRF7        --------->ANAC58  <---------MYB55(2) -------->MYB46(3) <---------O2            ----------->HVH21    --------->ANAC46  --------->MYB46(3) <<<<GATA-3        <---------TGA1a        <---------MYB59       --------->ANAC58----------->RAV1(1) -->WOX13(1)<-----------GT1  --------->At4g35610              <---------ALFIN1 --------->MYB46(3)----   ccaccaccgtcactttaccagacgtcatgactgctccagttcgacctgacattgtcaacttcgtccacgcccaaatctccaacaacagccgtcagcctta  658000                                                                   ------->TEIL                                                                   <---------ARR14(2)                                                                  <---------CCA1(2)                                                                --------->ANAC58                                                                --------->ANAC55(2)                                                                <---------ANAC55(2)                                                                <---------O2                                                                --------->O2                                                             ----------->HVH21                                                            <-----------HVH21                                                           --------->bZIP60(2)                                 --------->DEAR3(1)        ----------->HVH21                               --------->LBD16           <---------ANAC55(1)                               ------>NtERF2             <---------O2                              --------->DEAR3(1)    ---------->DOF2--------->ARR14(2)                           --------->AtMYB61        ======================bZIP_DOF             <-----                      --------->MYB46(3)         --------->LBD16--------->ANAC58             --------                      <---------MYB46(2)     --------->ARR14(2) <---------TGA1a      <---------MYB46(3)          --------->DAG2------>MYB46(1)  --------->LBD16 <---------ANAC58           --------->ALFIN1 ---SPL7  ---------->DOF2  --------->TOE2(2) <---------ARR14(2) --------->TGA1a  <-----------RAV1(1) --DAG2  ---------->DOF2------>MYB83     <---------LBD16 <---------ANAC46        ------>ZmHOX2a(1) -- ----->ANAC58         --------->AtMYB61 ------>ZmHOX2a(1)<---------ANAC58       <---------ANAC46 ---- ----->ANAC58    <-----------HVH21     <---------LBD16  <-----------------------TaNAC69(2) <---------GLK1(1) ----->ANAC46   <---------DEAR3(2)------>NtERF2<---------LBD16  --------->ANAC55(1) <---------AtMYB61   cgcagtctccaaaaaggccggtcaccaaacctccgccgagtcctggggaaccggaagagccgtgtcacgtatccctcgtgttcctggtggtggaactcac  658100                                                                                 --------->O2                                                                             --------->DEAR3(2)                                                                             --------->ATERF1(1)                                                                             <------NtERF2                                                                         <---------ATERF1(1)                                                              ------>ZmHOX2a(2)  --------->TGA1a        --------->ANAC58                   <---------YAB1    <------ZmHOX2a(2)   <---------ANAC46        --------->ANAC58            <---------MYB46(3)       --------->CCA1(2)   <---------O2       --------->WOX13(1)          <---------AtMYB61        <---------ARR11(3)   <---------ANAC58      ---------->DOF2           --------->ALFIN1            --------->ARR14(3)   <---------ANAC58     --------->WRKY18(1)      <---------ANAC58              --------->ARR14(2)   <---------TGA1a    <-----------HVH21         <---------ANAC46              --------->ARR11(3)  <---------MYB52(1)  <---------ANAC46            <---------O2<---------TOE2(2) <---------ARR14(2) <-----------HVH21  --------->ATERF1(2)      <-----------RAV1(1)              --------->AGP1<------NtERF2 ----At5g28300            ------->MYC3    <---------TOE1(2) <---------ARR14(3)--------->DEAR3(1) --->HVH21    <---------SPL7  <---------bZIP60(2)           <---------AGP1<---------ABI4(2) ------->ALFIN1           <-------MYC3  <---------SPL7    ----------->ARR10 ------>NtERF2 ----->DEAR3(1) --------->SPL7<---------ANAC58       ------>NtERF2       ------>NtERF2   cgtgccggtcaagcagcgttcggaaacatgtgtcgtggtggtcgtatgtttgctccgactaagatctggagacgctggcaccgtcgtgtcaatgtcaaca  658200                                                                                        <---------At4g35610                                                                                        --------->At4g35610                                                                                     ------>ZmHOX2a(1)                                                                                     --------->LBD16                                                                                    --------->TOE1(2)                                                                               --------->KAN4(1)                                                                               <---------KAN4(1)                                                                               <---------HSFB2a(1)                                                                               --------->HSFB2a(1)                                                                               --------->HSFC1(2)                                                                       --------->ARR11(3)                                                            ------->PIF5<------ZmHOX2a(2)                                                         <---------ANAC58      <---------HSFC1(2)       --------->ANAC58                                  <---------ANAC58     <---------KAN4(2)       --------->ANAC46                     <---------At4g35610<-----------HVH21--------->KAN4(2)       <---------ANAC55(2)                  <---------ZAT2  <-------PIF5====================HOX2a_HOX2a       --------->ANAC55(2)         <---------At4g35610   <---------ANAC46 --------->HSFB2a(2)       --------->ANAC58      <---------At4g35610   <---------YAB1      <---------ARR11(3)   tgaagaggcacgcgattgtttctgcaatcgctgctactgctgttccagctcttgtgatggctcgtggtcacaagatcgagaatgttcctgagatgcctct  658300  Previous    Next  AGI:  At5g02870.1    Description:  60S ribosomal protein L4/L1 (RPL4D). Identical to 60S ribosomal protein L4-2 (RPL4D) [Arabidopsis Thaliana] (GB:P49691;GB:Q9LYZ8); similar to 60S ribosomal protein L4/L1 (RPL4A) [Arabidopsis thaliana] (TAIR:AT3G09630.1); similar to 60S ribosomal protein L4/L1 (RPL4A) [Arabidopsis thaliana] (TAIR:AT3G09630.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO22101.1); similar to putative 60S ribosomal protein L1 [Trifolium pratense] (GB:BAE71215.1); similar to 60S ribosomal protein L4 (L1) (GB:Q9XF97); contains InterPro domain Ribosomal protein L4/L1e, eukaryotic/archaeal, conserved site (InterPro:IPR013000); contains InterPro domai Range:  from: 657784    to: 659731    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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