Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   <---------CCA1(1)                <-----------ARR10         ---------->DOF2      <-----------TGA1      <-----------HVH21                              --------->ALFIN1     --------->O2<---------RVE1(1)                 <---------bZIP60(2)     <---------O2<----------TaMYB80                <---------O2     --------->bZIP60(2)                           <---------ANAC58     --------->ANAC46                              --------->O2     --------->ANAC58                              --------->TGA1a     --------->ANAC58                              <---------ANAC46     ===============bZIP_DOF                       <---------TGA1a     --------->TGA1a                               <---------ANAC55(1)     <---------TGA1a                            ----------->TGA1   <---------ALFIN1      --------->bZIP60(2)    ----------->HVH21                               <---- -------->ARR14(2)       --------->ANAC46 <------ZmHOX2a(1)                               <---------ZAT6 ---------ARR14(2)  <-----------GT1   <---------ANAC58    ----------->GT1         =================== ---HSFB2a(2)   --------->ARR14(2)    <---------ANAC46    <------MYB46(1)         <------ZmHOX2a(1) -->HSFB2a(2)   <---------ARR14(2)    <---------ANAC58    <------MYB83            =================== ---HSFC1(1)  ----------->GT1  <---------AHL20(1)  <---------ANAC58            <-----------RAV1(2) -->HSFC1(1)<---------At4g35610--------->ARR11(3) ----------->STF1         <---------MYB46(3)  <-----   aagttccacgtcagagcggatatttccacatcatatattggcgaggattagtgacgtggatggtatatcaaaaacagtcgttcaggaggctagtggcaga  642200                      <---------ANAC46                      <--------ABF1                      --------->O2                      --------->TGA1a                      <---------TGA1a                      <---------ANAC55(2)                      <---------O2                  <-----------HVH21                 ----------->HVH21        <----------DOF2        ========================bZIP_DOF       ------>ZmHOX2a(2)         --------->MYB55(2)      <------ZmHOX2a(2)          <---------MYB46(3)      <---------RVE1(1)         <---------ANAC46     <---------ARR14(3)<-------MYC3                                             --------->ARR11(3)     --------->ARR14(3)------->MYC4                                             <---------GLK1(2)     --------->AGP1   --------->ANAC55(2)                                       <---------ARR11(3)     <---------ARR11(3)------->MYC3                                           ----------->ARR10     <---------ARR14(2)<-------MYC2     <------ZmHOX2a(1)               <---------MYB52(1)     --------->ARR14(2)------->MYC2   --------->ANAC58           <---------HSFB2a(2)                <     --------->ARR11(3)<-------MYC4   --------->ANAC58           --------->HSFB2a(2)                < -----GLK1(2)  <---------At4g35610<------MYB83       ----------->GT1   <-------GAMYB                < ============HOX2a_HOX2a     <---------AtMYB61<-----------HVH21<---------At4g35610       <------NtERF2 =============HOX2a_HOX2a    --------->ICU4  <----------ID1    --------->At4g35610     <---------ANAC46 ----At4g35610 --------->At4g35610<------MYB46(1) <---------O2 ----------->RAV1(2)    <---------LBD16   ttattaagatctttttgaactgacacgtgtaatggtgggtaaggaaaacgtcaagtggtaaactcatctggaccgttgaatagattttggcggaagagac  642300                                                                              --------->ARR11(3)            <---------AHL20(2)                                                <---------AHL20(1)           --------->AHL20(2)                                            --------->YAB1         --------->ARR11(3)        <---------ANAC58              <-----------GT1                    <         <---------ARR11(3)        <---------ANAC58         --------->ARR11(3)--------->AHL20(1)   <x ---------ANAC58           <---------YAB1               ---------->DOF2  --------->AHL20(2)       <xx ---------ANAC58      ----------->GT1              --------->AtLEC2     <---------ATHB12         <--- ---------ANAC46   <---------REM1(1)  <-----------------AGL1<---------ARR11(3)<---------ARR11(3) ----   tagcgtttaaagattttatagatgtagttaatattgggcttaccatatgggccattcaaaaagattttaacccaataaaaaatattcaaaaaactatcgt  642400                          --------->ATERF1(1)                      ------>NtERF2                    --------->ATERF1(1)                   --------->LBD16               --------->TOE1(2)               --------->TOE2(2)                                <xxxxxxxxxxxxxxxsmallRNA(le3)              <---------HSFB2a(1)                              <xxxxxxxxxxxxxxxxsmallRNA(s)              <xxxxxxxxxxxxxxxxsmallRNA(s)                     <xxxxxxxxxxxxxxxxsmallRNA(i)              <xxxxxxxxxxxxxxxxsmallRNA(le3)                  <xxxxxxxxxxxxxxxxxsmallRNA(se3)              --------->HSFB2a(1)                             <xxxxxxxxxxxxxxxxxsmallRNA(si3)              ----------->RAV1(2)                            <xxxxxxxxxxxxxxxxxxsmallRNA(se3)            <xxxxxxxxxxxxxxxxsmallRNA(s)                  --------->MYB46(3)    ----------->GT1      <xxxxxxxxxxxxxxxxsmallRNA(s)                        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)     <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <xxxxxxxxxxxxxxxxsmallRNA(se3)                        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <xxxxxxxxxxxxxxxxsmallRNA(s)                          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)   <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <---------At4g35610<---------DEAR3(1)                   <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <---------ZAT14  <---------LBD16                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  --------->At4g35610--------->DEAR3(1)                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  --------->ZAT2  <---------ANAC46                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <---------ZAT2 <xxxxxxxxxxxxxxxxsmallRNA(s)            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)       -- <xxxxxxxxxxxxxxxxsmallRNA(s)                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)   ------ xxxxxxxxxxxxxxxxsmallRNA(i)                          ------>ZmHOX2a(1)        *TSS  ---------->DOF2< xxxxxxxxxxxxxxxsmallRNA(s) <xxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <----- xxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <----- ------ETT(2)------->TEIL<---------ATERF1(1)         --------->TOE1(3)  --------->ETT(2)       ------ ----->ETT(2)<xxxxxxxxxxxxxxxxsmallRNA(s)            --------->TOE2(3)  <---------ETT(2)  -----------   cgacagcagggttcgaacctgcgcgggcgaagcccaatagatttcaagtctatctccttaaccactcggacatatcgacatctcgttaaaagcacaatta  642500                                                                               --------->At5g28300                                                                          ---------->DOF2                                                                        <---------MYB59                                                                       ----------------->AG                                                                       <---------------AGL15                                                                       ----------------->AGL1                                                                      <-----------------AGL1                                                                      <-----------------AG                                                                     <---------WRKY18(1)                                                                    --------->WRKY12                                                                    --------->WRKY38(1)    --------->LBD16        <---------ICU4                                              --------->WRKY45       ------>NtERF2  --------->TOE2(3)                                                --------->DOF5.7(2)     >>>>>>>>>> ------->AHL20(2)                                               <-------TEIL  ----------->GT1 --->AHL20(2)                                                  --------->CCA1(2)          --------->ANAC58 -----------GT1                                                --------->ARR14(1)         --------->ANAC46 ----AHL20(1)         --------->ZAT6                          --------->ARR14(2)          --------->ANAC58 ----AHL20(2)<---------ANAC58   <---------MYB52(1)            --------->ARR11(1)         <---------LBD16 --->AHL20(1)<---------ANAC58  <----------DOF2            --------->ANAC46--------->MYB52(1)       -- ->CBF  <---------AHL20(2)-------->P  <-----------GT1   *TSS  <---------ARR14(2)      <-----------GT1   attaacttaataaatgcgtttctaagtctacccctttagtttaccctagaaataacattcacgagatacgttgacctaaagggtaaattttcccgccatt  642600                            --------->ARR14(2)                            <---------ARR14(2)                         --------->TGA1a                         <---------O2                         --------->bZIP60(2)                         --------->O2                        ------>NtERF2                       --------->DEAR3(1)                      <------NtERF2 <------NtERF2                      --------->ATERF1(1)                      --------->DEAR4(2)                      --------->RAP2.3(1)                     <---------DEAR4(2)                     ------>NtERF2 <-----------HVH21                     --------->At4g35610                     <---------At4g35610                     --------->ATERF1(1)                     --------->DREB2C(1)                     <------NtERF2<---------DEAR3(1)                    --------->RAP2.6(2)                    --------->RAP2.3(2)                    <---------ATERF1(1)                    --------->RAP2.3(3)                    --------->DEAR3(1)                    --------->ATERF1(2)                    <---------DEAR3(1)                    <---------ATERF1(2)                   <---------RAP2.6(2)                                                         <-----                   --------->DEAR3(2)                                                          ------                   --------->ATERF1(1)                     <---------ARR14(2)             <---------O2                   --------->RAP2.3(1)                    <------NtERF2                   <---------bZIP60(2)                   --------->ORA47(2)                    --------->LBD16               ----------->HVH21         --------->GLK1(1)<---------ATERF1(1)           <---------ANAC46          ---------->DOF2   <     --------->HSFB2a(2)<------NtERF2                   <---------ANAC58        --------->YAB1 <-----     <---------HSFB2a(2)--------->LBD16                 <---------ANAC58       <------ZmHOX2a(2) <--- >>>>>>>LFY       <---------ATERF1(1)<---------O2      <---------LBD16         ====================== ------------->AtSPL8<---------ATERF1(1)           <---------At4g35610  ---------->DOF2----------->TGA1   gttagtaccagaactctctgggccgccgcgtctccgtcgtcgtggctatctacagatggcggataagaagaagcgaaagcgatcaaaagatgacgaggcg  642700                                                                                                    -                                                                                                   <-                                                                                                   <-                                                                                                   <-                                                                                                   --                                                                                                   <-                                                                                                  <--                                                                                                 ----                                                                                                 <---                                                                                                <----                                                                                                -----                                                                                                -----                                                                                                <----                                                                                                <----                                                                                               ------                                                                                               <-----                                                                                               <-----                                                                                               <-----                                                                                               <-----                                                                                               <-----                                                                                               ------                                                                                              <------NtERF2                                                                                              -------                                                                                              -------                                                                                              -------                                                                                             --------                                                                                             ------>NtERF2                                                                                             <-------                                                                                            ---------                                                                                            <--------                                                                                           <------NtERF2                                                                                          --------->LBD16                                                                                          <---------ATERF1(1)                                                                                         --------->DEAR3(1)                                                                                        --------->RAP2.3(1)                                                                                        <------NtERF2                                                                                        <---------LBD16                                                                                        --------->ATERF1(1)                                                                                       ------>NtERF2<                                                                                       --------->ABI4(1)                                                                                       <---------ATERF1(1)                                                                                      --------->RRTF1(2)                                                                                      --------->RRTF1(3)                                                                                      --------->RAP2.3(3)                                                                                      <---------ATERF1(2)                                                                                      --------->RAP2.3(2)                                                                                      --------->ATERF1(2)                                                                                      <---------DEAR3(1)                                                                                     --------->ORA47(2)                                                                                     --------->ERF1<-                                                                                     --------->ATERF1(1)                                                                                     <------NtERF2---                                                                                     --------->RAP2.3(1)                                                                                     --------->DEAR4(2)                                                                                     --------->RRTF1(1)                                                                                     --------->RAP2.6(1)        <----------DOF2                                                             <---------RAP2.3(1)   --------->HSFB2a(1)                                                              <---------DEAR4(2)   <---------HSFB2a(1)                                                              --------->At4g35610  <---------HSFB2a(1)                          <---------HSFB2a(1)                  <---------ATERF1(1)  --------->HSFB2a(1)                          <---------ZAT2                       --------->DREB2C(1)  --------->HSFC1(2)                           <---------HSFC1(2)                   <---------DREB2C(1)  <---------HSFC1(2)                           --------->HSFC1(2)                   ------>NtERF2<--- <-----------ARR10                             --------->HSFB2a(1)                 --------->RAP2.6(2) --------->ARR14(2)                            <---------At4g35610                 --------->DEAR3(1) <---------ARR14(2)                           <-----------ARR10                    --------->RAP2.3(2) ----ANAC46                                --------->ANAC46                        <---------DEAR3(1) --->ALFIN1                                --------->ANAC55(2)                ---------->DOF2<------- ------ZmHOX2a(1)                    --------->DOF5.7(2)             ------>ZmHOX2a(1)--------->DEAR3(1) ----DEAR3(1)         <---------HSFB2a(2)  <---------ANAC55(2)    <-----------GT1  --------->ANAC46<- ---NtERF2   ---------->DOF2  --------->At4g35610                <-----------GT1  --------->RAP2.3(1) ======HOX2a_HOX2a    --------->HSFB2a(2) <---------LBD16 ----------->GT1    --------->YAB1--------->ATERF1(1)   gaggaacttcctttcaaaagcattctggaatcagacgacgttatcacggagcttctcaaatcgtatatttcctcttctatcaaagccgccgccggagccg  642800     ------>NtERF2   --------->ATERF1(1)  ------>NtERF2  --------->ABI4(2)  <---------ATERF1(1) -------->ATERF1(1) --------ATERF1(1) --------DEAR3(2) --------MYB46(3) ------->ABI4(2) --------ORA47(2) -------DEAR3(1) ----->ATERF1(1) ---NtERF2 -----DEAR4(2) ---->LBD16 ->NtERF2 -----RAP2.3(1) -----ATERF1(1) --->DEAR3(1) ----DEAR3(1) ----RAP2.6(2)                                                               ===================HOX2a_HOX2a ----ATERF1(2)                                                               ------>ZmHOX2a(2) ----RAP2.3(3)                                                              <------ZmHOX2a(2) ----RAP2.3(2)                                                              ====================HOX2a_HOX2a --->ATERF1(2)                                                              --------->GLK1(1) -->DEAR3(2)                                                               <---------AGP1   --------- -->RAP2.3(1)                                                              <---------ARR14(2) -->ATERF1(1)                                                              <---------ARR14(3) ->ZAT2 ------>ZmHOX2a(1)            ----------->HVH21                     --------->ARR11(3) --ATERF1(1)                         --------->WRKY12                      --------->ARR14(2) <------ >ARR14(2)                         --------->ZAT2             <---------ANAC58             <---------ANAC58 -ARR14(2) ------>ZmHOX2a(1)       <---------ZAT2             <---------ANAC58             <---------ANAC58 ------NtERF2                      <---------At4g35610        <---------ANAC46           ------>ZmHOX2a(1) --------RAP2.3(1)                 --------->At4g35610     ------>ZmHOX2a(1)<---------GLK1(1) ------- ------>ALFIN1                 --------->TOE1(3)           ========================HOX2a_HOX2a------- ------ABI4(1)                --------->ZAT6               =========================HOX2a_HOX2a --ZAT2<---------ALFIN1 --------->TOE2(3)            --------->At4g35610   <---------ARR11(3)-------- --------DEAR4(2)    --------->ARR14(2)            --------->YAB1         <---------CCA1(2)<---------ANAC46   gcggtgcctcctcctcttcatcgaaacctctaaccctagctgacctctctctatcatcttcctgtcgtgaagtcgcagatctctcactctcctccgtgca  642900                                                                                   <------NtERF2                                                                                  ------>NtERF2                                                                                  <---------ATERF1(1)                                                                                  --------->ABI4(1)                                                                                 --------->RRTF1(2)                                                                                 --------->RAP2.3(3)                                                                                 --------->RRTF1(3)                                                                                 --------->RAP2.6(2)                                                                                 --------->RAP2.3(2)                                                                                 --------->DEAR3(1)                                                                                 <---------ALFIN1                                                                                --------->ORA47(2)                                                                                <------NtERF2                                                                                --------->RAP2.3(1)                                                                                --------->ATERF1(1)                                                                                --------->ERF1                                                                                --------->RAP2.6(1)                                                                                --------->RRTF1(1)                                                                                --------->DEAR4(2)                           ------>ZmHOX2a(2)                                   ------>NtERF2                          <------ZmHOX2a(2)           <---------ANAC58         <---------ATERF1(1) >LBD16                  --------->ARR14(2)           <---------ANAC58      --------->ANAC46 ---ZAT14                <---------ARR14(2)     ----------->HVH21           --------->ANAC58 -------- -->ZAT14             --------->HSFB2a(2)     --------->LBD16------>ZmHOX2a(1)--------->ANAC46    --- -->REM1(2)           <---------HSFB2a(2)    <---------DEAR3(1)             --------->ANAC58 <------- ->AtLEC2      --------->YAB1 <---------TOE1(2)<-----------HVH21        <-----------HVH21    --------   gacagagatagagacagtcatcgtccagatcgcccgttctattctcgccggtgatggcttctccttcagtgttccttcacgcgccgcctcgaatcagctg  643000                  --------->ZAT14        --------->At4g35610        --------->ZAT2                                                                          <----     ------>ZmHOX2a(1)                   --------->MYB46(3)          <-----------HVH21          <----     --------->LBD16                   -------->P             --------->ARR14(2)                -----   ----------->RAV1(2)       <----------ID1                   <---------ARR14(2)                <---- ->ZAT2 <---------ZAT2<---------ZAT6  <-----------GT1        <---------MYB52(1)          <---------ALFIN1 ---->TEIL --------->ETT(2)---------->DOF2               ------>NtERF2         --------->MYB46(3) --At4g35610      <---------ZAT14  <-----------ARR10   <---------ANAC58   <------ZmHOX2a(1)    <----- ->At4g35610<---------WRKY18(1)    --------->ARR14(2)  <---------ANAC58 >>>>>>>GRF7--------->AtMYB61-   tatgttcctgagctcgaccgtatagtgctaaaagacaaatctaccctccgtccatttgcctccgtttcttctgtcaggaaaaccaccatcaccactcgta  643100  Previous    Next  AGI:  At5g02811.1    Description:  unknown protein Range:  from: 642069    to: 642218    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g02815.1    Description:  pre-tRNA. tRNA-Ser (anticodon: TGA) Range:  from: 642398    to: 642479    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g02820.1    Description:  RHL2 (ROOT HAIRLESS 2); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing). similar to ATSPO11-1, ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing) [Arabidopsis thaliana] (TAIR:AT3G13170.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO18043.1); contains InterPro domain DNA topoisomerase VI, subunit A; (InterPro:IPR004085); contains InterPro domain Spo11/DNA topoisomerase VI, subunit A, N-terminal; (InterPro:IPR013049); contains InterPro domain Spo11/DNA topoisomerase VI, subunit A; (InterPro:IPR002815) Range:  from: 642556    to: 644392    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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