Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                               --------                                                                                             --------                         ----------->HVH21                                                   --------                     <---------ZAT14                                                 --------->ANAC58              <---------YAB1                       --------->ANAC58                  --------->ANAC58 ------>GT1<------ZmHOX2a(2)                       --------->ANAC58                ---------->DOF2 ->STY1(2)<---------ARR11(3)                     ---------->DOF2               ---------->DOF2<------ --STY1(2)--------->ARR11(3)           <---------ZAT6                      ---------->DOF2   --------   gtaacttcgatagatcatcagtgtccagtgacactgatttagtgtccaatagaaagcatccaagtttttgccaaaaaaaaagaaagaaagcatccaagca  575000                                                                                   <-----------HVH21                                                                      <---------AHL20(2)                                                        --------->AHL20(2)        --------->TOE1(3)                                            <---------ARR11(1)        --------->AHL20(2) ->ANAC58                                   --------->ARR14(2)       <---------AHL20(1) ->AtLEC2            <---------AHL20(2)     <---------ARR14(2)       <---------AHL20(2) ->ANAC58            <---------AHL20(1)     <---------ARR11(3)       --------->AHL20(2)    --------->AHL20(2) ---ATHB12           --------->AHL20(1)     --------->ARR11(3) --------->TOE2(3)  --------->TOE2(3) ->ANAC46 <-------TEIL       --------->ZAT6<---------CCA1(2) <-------TEIL <-----------GT1  <---------AHL20(2)   atacatataagtttcatttgcattatattcaacagtaccattttcatatcttgtttcaaaaaatacatcaaattattttccaaaccttcacatataattt  575100                                               <---------AHL20(2)                               --------->YAB1  <---------YAB1                              --------->At4g35610                 <---------AHL20(2)         <---------AHL20(1)                --------->AHL20(2)          <---------ARR11(3)                <---------AHL20(2)          --------->AHL20(1)                --------->AHL20(1)          --------->ARR11(3)         <-----------GT1      <---------At4g35610                                                 ---      <---------ICU4       <-------TEIL     --------->ICU4             ------>ZmHOX2a(1)          <--   gagaagaaatattacaaatttaatataggttcagcataatttagaaaatattattcaatgtttaaaacttctcctaaattttggagtattgctattaatc  575200                                     <------ZmHOX2a(2)                                    --------->ARR14(2)                                    <---------ARR14(2)                           <---------HSFB2a(1)                           --------->HSFC1(2)                           <---------HSFC1(2)                                               ------->GAMYB                           --------->HSFB2a(1)      <---------MYB46(3)                      ---------                          <---------AtMYB61   --------->YAB1                              --------->At4g35610   <---------TOE2(3)      <---------TOE1(3)  <---------ATHB12                        --------->YAB1 --->ZmHOX2a(1)           <---------TOE2(3) <-----------ARR10                       <-------TEIL    - --------DOF2      ---------->DOF2  <---------ARR11(3)<---------MYB52(1) ---------->DOF2  <---------At4g35610   cttttaatgtgaacaaaacattgaagcgaaggttgccagatcagcaaatcatagccgttgattcacttccaatccaaaagctaacattcatcaactgaca  575300               ------>MYB46(1)            <---------MYB55(2)            <---------MYB52(2)            --------->MYB46(3)           ------>MYB83           --------->ANAC58           --------->ANAC58           -------->P           ------>MYB46(1)         <---------MYB111(1)         ------->GAMYB         --------->MYB46(3)        --------->DEAR3(2)        <---------MYB52(2)        --------->MYB46(3)        <---------ATHB12        <---------MYB55(2)       --------->ANAC58       -------->P       ------>MYB46(1)       --------->ANAC58       ------>MYB83     --------->AtMYB61     --------->MYB46(3)     <---------MYB111(1)     ------->GAMYB    <---------ATHB12    --------->DEAR3(2)    <---------MYB55(2)                                                          *TSS    --------->MYB46(3)                                                         <------ZmHOX2a(2)    <---------MYB52(2)                                                       <---------At4g35610   --------->ANAC58                                                      <-----------HVH21   --------->ANAC58                                                   <---------LBD16   ------>MYB83------>MYB83                                         <-----------GT1   -------->P------->GAMYB       --------->ANAC58                <---------ARR14(2)         ---------   ------>MYB46(1)               --------->ANAC58                --------->ARR14(2)   --------->YAB1 --------->AtMYB61               --------->ANAC46         <---------MYB52(1) --------->At4g35610 -->HVH21--------->AtMYB61      --------->SPL7        ------>ZmHOX2a(1) --------->LBD16   --------->GLK1(2) -------->MYB46(3)  <----------DOF2  ---------->DOF2  ================================HOX2a_HOX2a   aaaccaaccaaccaaccaacttctttcgctatcttacgccaaagctctcttaattcctccgtttgcatattttccggtcagatcaaaatcagaatcagaa  575400                                          --------->ARR14(2)                                       --------->ANAC55(2)                                       --------->HSFB2a(2)                           --------->ANAC58                     --------->At4g35610                        <---------ATHB12  <---------ARR14(2)   --------->DEAR3(1)                      --------->WOX13(1)--------->LBD16       --------->RAP2.3(1)                 <------NtERF2         <---------HSFB2a(2)    <------NtERF2         <---------AtMYB61               <---------ANAC46        --------->ANAC46     --------->ARR14(2)<---------AtMYB61               --------->ETT(1)        <---------ANAC55(2)  <---------ARR14(2)--------->ALFIN1             <-----------HVH21        <---------LBD16  ---------->DOF2  >>>>>>>>>TBF1     ------>ZmHOX2a(1)          <---------ANAC58 --------->ANAC58   ---------->DOF2<---------ATERF1(1) <---------ANAC46 >YAB1    <---------ANAC58 --------->ANAC46 --------->MYB46(3)--------->ATERF1(1)--------->ALFIN1  --   tcaaatttctcgtcgtgtcggagtaaatcaagccatggattccggaaccaaagtgaagaaaggagccgctggaagaagaagtggtggaggtcctaagaag  575500                                                       <------MYB83                                                       <------MYB46(1)                                                  ------>ZmHOX2a(2)                                                --------->ARR14(2)                                                <---------ARR14(2)                                               <------ZmHOX2a(1)                                   <-                                              <------MYB46(1)                                      --                                              <------MYB83                                         <-                    --------->ARR14(2)    <---------DEAR3(2)                                       --                    <---------ARR14(2)   <---------At1g77200                                       <-               <-------GAMYB            <<<<<<<<<<DREB1A                                           --              <------MYB83              <<<<<<<<<<DREB2A                                        -----              ----------->GT1         <-----------RAV1(1) <---------ARR11(3)                  <------              <------MYB46(1)         ------>ZmHOX2a(1)<---------DEAR3(2)                --------->ETT(1)            --------->SPL7 --------->ETT(2)<---------MYB52(1)     ---------->DOF2   <---------ANAC46           <---------MYB52(1)       <---------ANAC58 <---------MYB55(1)             <---------ANAC58          <---------SPL7   <---------ETT(2)<-------GAMYB <---------CCA1(2)          <---------ANAC58       ----------------->AGL1<---------ZAT14<--------P<---------MYB46(3) <-------GAMYB--------->ALFIN1    <---------ARR14(2)  --------->LBD16<-----------HVH21<---------MYB52(1)<---------MYB52(1)---------    --------->ARR14(2)<---------LBD16 ===================HOX2a_HOX2a    <---------MYB46(3)  <-------- ------->MYB52(1) ----------->ARR10 <---------ANAC58 <---------ORA47(1) ----------->GT1<-----------HVH21   aaaccggtttcccgttcggttaaatccggtctacagtttcctgtcggtaggatcggtcggtatcttaagaaaggtcgttattcgaagcgtgtcggaaccg  575600                              --------->ARR11(3)                              <---------ARR14(2)                              --------->ARR14(2)                              <-----------ARR10                              --------->GLK1(2)                        ------>ZmHOX2a(1)                    <---------SPL7                    ------>NtERF2                    <-----------HVH21                    <---------RAP2.6(3)                    --------->ORA47(1)                   --------->RAP2.3(2)                   --------->RAP2.6(2)                  --------->ATERF1(1)                  --------->RAP2.3(1)                  --------->ORA47(2)                 ------>NtERF2<---------ARR11(3)                 <---------ATERF1(1)                                              <---------At4g35610                --------->DEAR3(1)                                                --------->At4g35610                --------->RRTF1(3)                                               --------------------                --------->RAP2.3(2)                                        <--------HAHB4    --------->LBD16--------->DEAR3(1)                                      <---------ICU4  <---------LBD16--------->ABI4(1)                                         --------->YAB1 --------GLK1(1)--------->RAP2.3(3)        ----------->GT1                 --------->ATHB12 ------->GLK1(1)--------->ANAC46<---------ANAC58                          --------->ICU4 --------At4g35610<------NtERF2 <---------ANAC58  --------->DAG2          <---------ATHB12 ------->At4g35610--------->DEAR4(2)      <---------TOE2(3)          <---------At4g35610 --------ZAT2   <---------DEAR3(1)     <----------CDC5               --------->At4g35610 ------->ZAT2  --------->ERF1<---------CCA1(2)   ---------->DOF2  <------ZmHOX2a(2)                <- ---->LBD16    --------->DEAR4(2)     <---------At4g35610        --------->ARR14(2)            <----- ---LBD16      --------->RAP2.3(1)    <---------ZAT2             <---------ARR14(2)      --------->ATHB51 >ARR14(2)     --------->ATERF1(1)    --------->At4g35610       --------->At4g35610      <---------ICU4 -ARR14(2)    <---------ATERF1(1)     --------->ZAT2            <---------At4g35610     --------->ICU4   gagctccggtctatctcgccgccgtcctcgagtatcttgctgctgaggtaataaagttctgaattcagatcagctaatcatttcatcggaattatcgcag  575700                                               <---------WRKY18(1)                                              --------->WRKY45                                              --------->WRKY38(1)                                              --------->WRKY12                       <---------TOE1(3)                                           <---------ANAC46                          <---------TOE2(3)                                        <---------ANAC58                   <---------At4g35610      -                       <---------ANAC46 <---------ANAC58            <---------ARR11(3) --------->At5g28300 ->WRI1            <---------ANAC58  <---------MYB52(1)             --------->ARR11(3)----------->GT1 ------TEIL        <---------ANAC58 <-------GAMYB           <---------REM1(1)   <----------DOF2  ---- ----TOE1(2)    <---------GLK1(1)  <-----------RAV1(1)      --------->ALFIN1 <---------YAB1   -------   tttcatcgatttcactagaattcttgtgggttttgttctgttgcttcgttgaccatctataggtgtagaatgtcttcttctgattttagggtaaattgat  575800                                                          --------->ANAC58                  <--------      <---------TOE1(3)                                   --------->ANAC58               --------->ARR11(3)      <---------TOE2(3)                               --------->TOE2(3)               <-----------GT1  <---------At4g35610                                 --------->TOE1(3)          <------MYB46(1)  --------->At4g35610                               ------->TEIL                 <------MYB83  ----------->RAV1(2)                               -------->P                  <---------TOE2(3)<--- -------->YAB1                                   <------ZmHOX2a(2)              --------->MYB59 <---- ----->YAB1                                     <---------ARR11(3)          --------->WOX13(1)  <---- -->YAB1  ----------->GT1   --------->MYB59     --------->ARR11(3)      <----------DOF2  <---------ARR11(3)   aatcatctgaggttgtaaaattgaatttgttagatactatatcacgagtagatcaacctcaagacatggtttcactttcaattaggtttaacatctttgc  575900  Previous    Next  AGI:  At5g02560.1    Description:  HTA12; DNA binding. Identical to Probable histone H2A.4 [Arabidopsis Thaliana] (GB:Q9LZ46); similar to HTA6, DNA binding [Arabidopsis thaliana] (TAIR:AT5G59870.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN60181.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN63391.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone H2A; (InterPro:IPR002119) Range:  from: 575380    to: 576604    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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