Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                          <---------ICU4                                                       <---------YAB1                             <--                                                     <---------ICU4                              ----                                                    =================================HOX2a_HOX2a ----                                                    <---------------AGL15                        ----                                                    --------------->AGL15                        ----                                                    ------>ZmHOX2a(1)  --------->ALFIN1       -------                      --------->At5g28300     <---------HSFC1(2)     --------->At4g35610      <------ <---------YAB1      --------->RAP2.6(2)      --------->HSFC1(2)--------->CCA1(2)      --------->DAG2 --ZmHOX2a(1)        ----------->GT1   <---------ANAC46--------->ICU4--------->ZAT2--------->YAB1<--- ---AGL15      -------->HAHB4   --------->ZAT18    <-----------------AGL2        -------->P <-------- --->AG        <---------ICU4   <---------ZAT18    <-----------------AGL3     <------ZmHOX2a(2) ----- --->AGL1      --------->ATHB12 <---------ZAT14    <-----------------AGL1--------->ALFIN1  <-------TEIL ->AGL15      --------->ICU4    --------->ZAT14    --------->TOE2(3) <---------ZAT2--------->TOE2(3)<   attataaacgaagaaaatgatggccgtaacaatgtgcagtctcttggacacttcctcattatggagagacgagctgtgggatcaaccataaggtccacac  532700         --------->DREB2C(2)         --------->DEAR3(1)       ------>NtERF2      <---------ALFIN1    <-----------HVH21   --------->DEAR4(1)   --------->DREB2C(2)   <---------ETT(1)   --------->At1g77200   --------->DEAR3(1)  --------->DEAR3(2) ------>NtERF2 ---------HVH21 ----->DEAR4(1) ----->DEAR3(1)                                                                               ------- ----->DREB2C(2)                                                                              ------- ----->At1g77200                                                                              ------- -->ANAC46 ------>MYB83                                                                       ------- ---ALFIN1 ------>MYB46(1)                                                                 ---------- ------ETT(1)                                                                 <---------GLK1(1)  ---- -ALFIN1--------->DEAR3(2)      <---------AHL20(2)                            --------->GLK1(1)  ---- ---->DEAR3(2)               --------->AHL20(2)         --------->TOE2(3)  <---------YAB1  ---------- ---------ALFIN1           <---------MYB52(1)    <----------DOF2    ----------->GT1------>ZmHOX2a(1)   cgacaccgacaccgactatgtgaatgtccgataatttatagccaattgtgtctttaaacgataatggaatgtgtaatatgatttcctcatggtctgacgc  532800      <---------YAB1   --------->GLK1(2)  <---------GLK1(2)  --------->ARR14(2)  <---------ARR14(2) -->ANAC58 -->ANAC46 -->ANAC58 -->bZIP60(1) ->TGA1                                                                                        <----- ------->RAV1(1)  <---------AHL20(2)                                     ----------->GT1       <----- ----->MYB52(1)  <---------YAB1  <---------TOE2(3)              <---------ANAC58               <----- ->HVH21        <---------AHL20(2)  --------->CCA1(2)           <---------ANAC58           <---------   aacagattctgattgtatttttattttgtcaatttgagatttggagtttaaaatttgtttttggtttcttatgtatagttcaaaaacagttttctttgca  532900                           <------NtERF2                  <---------ICU4                  --------->ATHB12                  <-----------------AGL1                 <---------YAB1                    --------->ARR14(2)                 <---------AHL20(2)                <---------ARR14(2)                <---------AHL20(2)                 ------->TEIL              <---------AHL20(2)                  <---------CCA1(2)            <---------AHL20(2)                    <---------ARR14(1)           --------->ARR11(3)                   --------->ANAC55(2)           <---------ARR11(3)                   <---------ANAC58 ----ANAC58--------->AHL20(2)                   <---------ANAC58                    <---------YAB1 ----ANAC58<---------AHL20(2)                   <---------ANAC55(2) <---------AHL20(2) ----AtLEC2--------->AHL20(1)                   <---------ANAC46    --------->AHL20(2)   ---------->DOF2 -DOF2     <---------AHL20(1)        <----------ID1<---------ARR11(1)               ------>ZmHOX2a(1)   tgagttgcatcaatatatttttattgggcctcgttgaaagaaacaaaatttcgtatctaataaggcccaaaaaattgaaacaattcctgattaaagccca  533000                         --------->MYB46(3)     --------->ARR14(2)                        ------------>CBF        --------->ARR11(1)                       ----------->RAV1(1)    ----------->ARR10              <---------MYB52(1)             <--------P            <---------ANAC58             <------NtERF2            <---------ANAC58           <-----------RAV1(2)           <---------ARR11(3) --------->TOE1(3)            <---------ANAC46    ------------>CBF<---------ARR14(2)   --------->ARR11(3) --------->TOE2(3)    <-----------GT1    ============================RAV        ---------->DOF2--------->YAB1      <---   gtttataaactatttcgtttgggcccaacaatctcacaatggcaggggtagatttggaaatatagaaagaaggtctcaaaaatcactaaaccctaatctc  533100                                                                    --------->ABI4(2)                                                                    ------>NtERF2                                                                    <---------ZAT18                                                                   <---------ANAC46                                                                  --------->RAP2.3(1)                                                                  --------->ATERF1(1)                                                                  <------NtERF2                                                                 ------>NtERF2                                                                 <---------DEAR4(2)                                                                 <---------RRTF1(1)                                                                 <---------RAP2.6(1)                                                                 <---------ATERF1(1)                                                                 <---------ORA47(2)                                                                 <---------ERF1                                                                 <---------RAP2.3(1)                                                                <---------ATERF1(2)                                                                --------->ATERF1(2)                                                                <---------ANAC46                                                                <---------RAP2.6(2)                                                                <---------RRTF1(3)                 --                                                                <---------DEAR3(1)       --------->O2                                                                <---------RAP2.3(2)      <---------O2                                                                <---------RRTF1(2)       --------->TGA1a                                                                <---------ANAC58         <---------TGA1a                                                                <---------DREB2C(2)      ============                                                                <---------ANAC58         <---------ZAT2                                                               <---------ABI4(1)         --------->At4g35610                                                 <----------DOF2<---------RAP2.3(3)      <---------At4g35610                                                 ==================================================bZIP_DOF                                        --------->TOE2(3)      --------->ATERF1(1)       --------->ZAT2                                      <---------ARR11(3)     --------->ALFIN1            ============    *TSS          <---------AHL20(2)  <-----------ARR10  --------->ZAT14               <-----------RAV1(2) -------DOF2     --------->AHL20(2)  <---------CCA1(2)   <---------ZAT14        <-------TEIL      <--   tttattttggagaagactataaaatcgattttctctcacaaatcttattctctttcgacttcagtggcggcgcattcagagattcaaactcaggtgagtg  533200           <----------DOF2          ------>ZmHOX2a(2)         <------ZmHOX2a(2)         <---------RVE1(1)        <---------ARR14(2)        --------->AGP1        <---------AGP1        <---------ARR11(3)        --------->ARR14(2)        --------->ARR11(3)        <-----------ARR10       <---------CCA1(2)     --------->YAB1  <---------ICU4        --------->ATHB12 <---------YAB1     --------->ATHB12 --------->ICU4   <----------DOF2                                             <----------DOF2 ------->YAB1     <---------DAG2                                             <---------ICU4 =====================bZIP_DOF                                             <---------ARR11(3) =====================bZIP_DOF                      <---------ZAT6         --------->ARR11(3) -------YAB1  ---------->ID1              <----------DOF2            <----------ID1   atcataatcagatcttttcgctttattgatttcatatgtagtctctttcgattagtgtgaaagttttggaatcgacaaatctttacgagttactactact  533300                                                                                    --------->YAB1                           <---------ATHB12                                     ----------->GT1                  <---------ANAC58                                            <---------ZAT2             --------->ARR14(2)                         --------->LBD16       --------->At4g35610   -     <-------TEIL <---------ANAC58                     ----------->GT1        <---------At4g35610  --   actagagtacatcgcgatttgcttattcaatcgtttttgagaaattgaattgttcgtccgtaaaatcagttttggaattgagctgataatattagaagat  533400                                              --------->GLK1(2)                                             <---------ARR11(3)                                             --------->ARR11(3)                                        ------>ZmHOX2a(2)                                       <------ZmHOX2a(2)                                       --------->CCA1(2)                                      <---------ARR11(3)                ----------->GT1       --------->ARR14(2)                   --------->ATHB12         --------->At4g35610          --------->ARR11(3)                  <---------YAB1     <---------ANAC58                 <---------ARR14(2)                  --------->ICU4     <---------ANAC58                 --------->AGP1                   <---------YAB1               < -------->CCA1(2)                     <---------AGP1                   --------->ICU4              <- ------->ARR11(3)                   ----------->ARR10              <-----------HVH21     <------NtERF2   agatatagcttatctgaagagaaaatcgcatagaagagtagatctgagattttgttcttgaactaaatatgtcacgattattgaaattggcagagaaaat  533500                                                           ------->GAMYB                                                          --------->MYB46(3)                                                     --------->ANAC58               <---------ANAC58                ------>MYB46(1)    <------NtERF2                              ------>MYB83--------->AtMYB61   ------>NtERF2<---------LBD16               --------->MYB55(1)  --------->ETT(2)                           <---------MYB59  <---------ALFIN1           --------->At4g35610  <---------ETT(2)                           --------->MYB46(3) --------->ANAC46      <--------P  ----------->HVH21                       <-----------GT1-------->P              --------->DAG2  <---------bZIP60(1)       ---------->DOF2  <---------MYB46(2)------>ZmHOX2a(1)--------->DAG2 <------NtERF2 <---------ANAC58 <------ZmHOX2a(1)    --------->ANAC58          ---------->DOF2 --------->ATERF1(1)----------->GT1  ------->MYC3--------->ANAC58           ------->GAMYB<---------At4g35610 ---------ATERF1(1) <---------PCF2   <-------MYC3--------->ANAC46        ----------->RAV1(1) --------DEAR3(1)--------->ALFIN1   <---------O2 --------->ANAC58       --------->MYB46(3)       <---   ggtggcgacaggcttattcgtggggctaaacaaaggacacgttgttaccaaacgcgagcaacctcctcgccctaacaacagaaaaggggtaagctctcta  533600  Previous    Next  AGI:  At5g02440.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO15638.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN65558.1) Range:  from: 531026    to: 532936    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g02450.1    Description:  60S ribosomal protein L36 (RPL36C). Identical to 60S ribosomal protein L36-3 (RPL36C) [Arabidopsis Thaliana] (GB:Q9LZ57); similar to 60S ribosomal protein L36 (RPL36B) [Arabidopsis thaliana] (TAIR:AT3G53740.4); similar to 60S ribosomal protein L36 (RPL36B) [Arabidopsis thaliana] (TAIR:AT3G53740.2); similar to 60S ribosomal protein L36 (RPL36B) [Arabidopsis thaliana] (TAIR:AT3G53740.3); similar to hypothetical protein [Vitis vinifera] (GB:CAN64895.1); contains InterPro domain Ribosomal protein L36e; (InterPro:IPR000509) Range:  from: 533104    to: 534654    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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