Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                               --------->ICU4                                                     --------->MYB52(1)                                                     <---------DOF5.7(2)                          <----------DOF2          --------->At5g28300                       ---------->ID1              --------->DOF5.7(2)     <----------DOF2     --------------->AtSPL8   <-----------GT1  --------->MYB52(1)        ---------->ID1         ----- ----------DOF2       <-----------GT1 <---------ANAC58  ------->GAMYB   <-----------GT1        ------ >MYC3            <------------------------ANAC81 ------->GAMYB        <<<<<<<<<<GT-3b         ------ -MYC3            <----------DOF2     <---------ANAC58 <------------MYB.PH3(1)                <------   gtctttgtccataccatcttcttttctccttttctcaatttcgagcttctaacggtaacggtacttatgctatttttctttttattcaatattccaataa  530600            --------->TOE1(3)            --------->TOE2(3)       <---------GLK1(2)                             --------->AHL20(2)           ----------->RAV1(2) -------->P                                         <---------AHL20(2)          ------>MYB83 --------->ANAC58                                          --------->AHL20(2) ---->AHL20(2)         --------->ANAC46                                  <---------ATHB12          <- --->YAB1 ------>MYB46(1)   <---------MYB52(2)                         ------>MYB46(1)           ---- --->AHL20(2)      --------->ARR11(3)                                  ------>MYB83             ----- ---ATHB12-------->P   --------->ANAC58       --------->ZAT6         <---------MYB59      --------->ANAC46   aaatagtattccaacctgaaatatcaagacactaaccagaatttcataccactatagaatcgaaactaataccaaatcaaaaattaaaatccactaaatt  530700                                                                  ------>MYB46(1)                                                                  ------>MYB83                                                              --------->SPL7                                                            --------->LBD16                                                            <---------SPL7                                      ---------->DOF2      <---------ANAC58                                   --------->TOE1(3)       <---------ANAC58                                   --------->TOE2(3)       --------->ANAC55(2)                                ------->GAMYB             --------------->AtSPL8                               --------->MYB46(3)    <------MYB46(1)<------------CBF----------->TBP                         --------->WOX13(1)     --------->ATHB12<---------MYB59     <---------YAB1 --------------AGL15   ------------>CBF  <---------ATHB12 --------------->AtSPL3  --------->YAB1 ----->YAB1      ---------->ID1<---------MYB111(2)   <------MYB83<<<<<<<<<<<<<<<<<LFY         <------ ------>GT1 --------->TOE2(3)<-----------GT1   <---------YAB1 ------->TEIL       <---------YAB1     <   gataattttagaaacctttgttcccttcaattaacaaccttaaatcaagatgatttggtttccgtacctacattggattcagtattataaatagctatgt  530800                                          <-----------HVH21                                         --------->ANAC55(1)                                         --------->ANAC58                                         --------->ANAC46                                         --------->ANAC55(2)                                         --------->bZIP60(1)                                         --------->bZIP60(2)                                         <---------O2                                         --------->O2                                         --------->TGA1a                                         <---------TGA1a                                         <---------bZIP60(1)                                  =================MYC_MYB                                  <-------GAMYB                                 <------MYB46(1)                                 <---------MYB46(3)                                 <------MYB83                            ----------------------->TaNAC69(2)                       xxxxxxxxxxxxxxx>smallRNA(si3)                     <---------ANAC58    --------->ANAC58                     <---------ANAC58    <---------ANAC55(2)                     <---------ANAC46   <-----------STF1                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                    xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                    xxxxxxxxxxxxxxxxx>smallRNA(se3)                    xxxxxxxxxxxxxxxx>smallRNA(s)                    xxxxxxxxxxxxxxxx>smallRNA(i)                    xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                    xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                    --------->LBD16                    xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                         <---------LBD16                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     <---------LBD16                    xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                      xxxxxxxxxxxxxxxx>smallRNA(s)                    xxxxxxxxxxxxxxx>smallRNA(si3)                            xxxxxxxxxxxxxxxx>smallRNA(si3)                    xxxxxxxxxxxxxxxx>smallRNA(se3)                          xxxxxxxxxxxxxxxx>smallRNA(s)                    *TSS  <---------ANAC46<-----------TGA1                  xxxxxxxxxxxxxxxx>smallRNA(i)                    xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                     xxxxxxxxxxxxxxxxx>smallRNA(si3)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                  xxxxxxxxxxxxxxxx>smallRNA(s)                    xxxxxxxxxxxxxxxxx>smallRNA(le3)                       xxxxxxxxxxxxxxxx>smallRNA(s)                    xxxxxxxxxxxxxxxxx>smallRNA(si3)                      xxxxxxxxxxxxxxxx>smallRNA(s)                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 xxxxxxxxxxxxxxxx>smallRNA(i)                    xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            xxxxxxxxxxxxxxxx>smallRNA(s)                    xxxxxxxxxxxxxxxxxx>smallRNA(se3)                 xxxxxxxxxxxxxxxx>smallRNA(s)                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          <---------LBD16                    xxxxxxxxxxxxxxx>smallRNA(se3)              <---------GLK1(1)                    xxxxxxxxxxxxxxx>smallRNA(le3)             --------->ARR11(3)     --------->ANAC58                    xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       --------->ARR14(3)     --------->ANAC58                    xxxxxxxxxxxxxxxxxxx>smallRNA(se3)         <---------ARR14(3)   <---------ATERF1(1)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     <---------ARR11(3)------>NtERF2                    xxxxxxxxxxxxxxxxxx>smallRNA(si3)         xxxxxxxxxxxxxxx>smallRNA(le3)                    xxxxxxxxxxxxxxxxx>smallRNA(fl3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       ------->TEIL xxxxxxxxxxxxxxxxxx>smallRNA(fl3)        xxxxxxxxxxxxxxxx>smallRNA(le3)       <--- ---YAB1 <-----------HVH21<---------REM1(1)              xxxxxxxxxxxxxxxx>smallRNA(fl3)        <----- ---------YAB1      xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <--------   ttatgaatgaatgtcaaatggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagccaatttctt  530900                                                    --------->YAB1                                                    <---------ICU4                                                    <---------AHL20(2)                                                    -------->ATHB1                                                    --------->AHL20(2)                                                    --------->ATHB51                                                    <--------HAHB4                                                   <---------ATHB51                                               ------------>CBF                                             --------->WOX13(1)                                       --------->AHL20(1)                                       <---------AHL20(2)                                    ------>MYB46(1)--------->ICU4                                    ------>MYB83   <---------ATHB12                                  <---------MYB59--------->WOX13(1)       --------->AHL20(2)         ===========================================MADS_MADS       <---------AHL20(2)         --------------->AGL15                        <---------ALFIN1  <---------AHL20(1)              <---------------AGL15 <-----------GT1      ----------->RAV1(1)  <---------AHL20(2)           <-----------GT1 <---------ATHB12        <---------------AtSPL8  --------->AHL20(2)        <---------ICU4  --------->AHL20(2)         --------------->AtSPL8      <- ------AHL20(2)            --------->ICU4   <---------AHL20(2)     --------->DAG2             ------- -----DOF2                 <---------YAB1  --------->AHL20(2)     ---------->DOF2--------->ANAC46<--- -ARR11(3)              <---------YAB1 --------->AHL20(2)    --------------->AGL15  <---------ICU4---   ttattttattttaatctcgtcgagttttgattattaccaaataaaataaatcaattattttctctccaaaaagtatgtacaacacatcatttcattagct  531000                           ------>MYB46(1)            <---------TOE1(2)       ---------->ID1      ------>MYB83  <----------DOF2          <---------CCA1(2)                                                   ------ --------ARR11(3)         *TSS                                                                <------ -->At4g35610            ------->GAMYB                                               ------>ZmHOX2a(1) ----TEIL  ------>ZmHOX2a(1)             <----------DOF2                         <-----------GT1   <- ------>REM1(1)          --------->AtMYB61         ---------->DOF2   <-----------RAV1(2) <----------DOF2   acatcttttgttcctaagtttattcaaccaaatctctctctccctttgagtctcaaagcttcaatggctcaccaggtactgtttctcctctctttttttc  531100                                            --------->AHL20(2)                                      --------->ANAC58                                      --------->ANAC46                       --------->AHL20(2)    <- ---->ID1                   --------->AHL20(2)      --------->ZAT14   ------->TEIL  <------ZmHOX2a(1) -----GT1  <----------DOF2<----------DOF2 <---------CCA1(2)  <-------MYC3   <---------YAB1 <------ZmHOX2a(1) ---------DOF2  --------->ZAT6        --------->ANAC58       ------->MYC3<---------YAB1<------ZmHOX2a(1)   tctttctctggctctttaacacaatagcctttatatacacacgcatatatatagtatagaccatgtgtaatggatgtgattatataggaggaaggatggc  531200                                                                 --------->YAB1                                                                 <---------ICU4                                                                --------->ICU4                                                              <---------ICU4                                                             <---------YAB1                                                           --------->YAB1                                                           <---------ICU4                                                          <---------YAB1                                                        <---------ICU4                                                        --------->YAB1             <---------MYB46(3)                                 <------ZmHOX2a(1)     <---------YAB1           <---------ZAT2 <-----                          --------->GLK1(2)          --------->YAB1             --------->At4g35610<-  <---------ANAC58       <---------GLK1(2)           <---------ICU4             <---------At4g35610--  <---------ANAC58     --------->ANAC58       <-----------ARR10 <---------YAB1  --------->ZAT2 ------ --------MYB52(1)      --------->ANAC58      <------ZmHOX2a(1)--------->YAB1   <-----------RAV1(1) --   cattgggtctgagaccagtaaatgcaagaatcggaggactcacaagaggaactcatcatcatcatcatcatgaacaagtctctgctggttcaatctcctt  531300                                                     <---------TOE1(2)                                           ------>ZmHOX2a(2)                                          <------ZmHOX2a(2)                                         <---------ARR14(2)                                         --------->ARR11(3)                                         --------->ARR14(2)                                     ------>ZmHOX2a(1) ------HVH21   ==================================HOX2a_HOX2a --------At4g35610       <---------At4g35610   <---------GLK1(2) ------->ZAT2  ===================================HOX2a_HOX2a >ZmHOX2a(1)   ------>ZmHOX2a(1)     =============HOX2a_HOX2a                               --------- ------->At4g35610       --------->At4g35610 <---------YAB1      <-----------GT1          --------->AHL20(2)   cagctctcttctctctccttctccctcatctcaatcttcctccgatcttgattctcaggtccgatatatacacttctctacttatactataaatatatgc  531400                                                                               --------->GLK1(2)                                                                              <---------ARR14(2)                                                                              <---------GLK1(2)                                                                  <---------LBD16         <-------GAMYB                                                         --------->ZAT14      --------->ARR14(2)                                                         <---------ZAT14  --------->At4g35610                                          ===========================================================                   --------->ARR14(2)     --------------->AGL15  <-----------GT1         <---------MYB46(3)                   <---------ARR14(2)     <---------------AGL15 <---------REM1(2)     <---------ANAC58    --------->CCA1(2)                     ===========================================================   <---------ARR11(3)        <----------DOF2          ----------->GT1     <---------At4g35610      --   --------->ARR11(3)        <---------DAG2         <---------ZAT14    <--------P <----------DOF2<--- >CCA1(2)       <---------ANAC46 --------->AHL20(2) --------->ZAT14--------->ANAC55(2)<---------ANAC58   atatagatatatatagttgcatatatacacactttttatatagactatatatagtatagtaaactattcacgggttagcagattcttttcttggttgaat  531500  Previous    Next  AGI:  At5g02435.1    Description:  pre-tRNA. tRNA-Val (anticodon: AAC) Range:  from: 530820    to: 530893    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g02440.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO15638.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN65558.1) Range:  from: 531026    to: 532936    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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