Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            ----------->GT1                                          <----------ID1                                      ---------->DOF2                              --------->AHL20(2)                                              -------                              <---------AHL20(2)                                           ----------                             <---------AHL20(2)     <---------ICU4<---------ANAC46    <---------YAB1                          --------->AHL20(1)       <---------AHL20(2)              <-----------------AGL1                          --------->AHL20(2)       --------->AHL20(1)            <---------CCA1(2)     --------->MYB46(3)   <---------AHL20(2)       --------->AHL20(2)         <---------TOE1(2) -----------HVH21        --------->AHL20(2)       --------->AHL20(2)  <---------YAB1--------->YAB1   aatgtcaactactaaatcaacaaaaaaaaaaattatttagcaaagagaaaaaaaaaattacaagagtgacttattcttcgttcgtatcacaattggtaaa  473900                    ------->GAMYB                    --------->ANAC46                    --------->DEAR3(1)                ---------->DOF2              --------->LBD16             --------->ANAC58             --------->ANAC58            <---------LBD16                                         <---------ZAT18         <---------GLK1(1)                                       <---------ANAC58         <---------ZAT2                                          <------MYB46(1)         <---------At4g35610           --------->YAB1            <---------ANAC58         --------->GLK1(1)            <---------ATHB12       --------->ARR14(2)         --------->ZAT2           --------->MYB46(3)         <---------ARR14(2)        ----------->ARR10       <-----------GT1           <---------ANAC58 <---------ANAC58  --------->DEAR3(2)------>MYB46(1)      <---------ANAC46 <---------ANAC58  --------->MYB46(3)------>MYB83         <---------ANAC58                         -- --->DOF2--------->At4g35610 <----------DOF2      <-----------GT1<------MYB83       <---------TOE1(3) ->GT1 ------>NtERF2--------->RAP2.6(2)<---------ICU4  <----------DOF2              <---------TOE2(3)   gagacttgccgagctccgcaaaccgccatgcctttaaccaatcttcacctataaactctttcgtatttggtgcaatcggagaaattagggtttttttctg  474000                                                                <------------CBF                                                               <---------ICU4                                                               --------->YAB1                                                               --------->ATHB12                                                              <---------YAB1                                          <---------GLK1(2)<---------AHL20(2)                      <-                                          <---------ARR14(2)  <---------ATHB12                  <----                                  --------->TOE1(2)       --------->AHL20(2)                   ------                            --------->HSFB2a(2)           <---------AHL20(2)                ---------                            <---------HSFB2a(2)           <---------AHL20(1)             <-----------GT1                        <----------DOF2   --------->ARR14(2)  --------->ICU4       <---------TOE2(3)            <XXXXXXXXXXXXXXXXXXXXXMIR2933A/B   <------------CBF-------->ATHB1      <---------TOE1(3)  <------------CBF   <-----------------AGL3--------->GLK1(2)--------->YAB1         --------->MYB59 -- ---------->CBF  <<<<<<<<<TBF1    --------->TOE2(3)       --------->AHL20(1)------------>CBF<--------   agacaattggaggtatttcttcttcgatttttggaacctaagccgattctattgctgtaatataatcattgtaatttgaacaatttaggttttactttaa  474100   ----------->RAV1(2) --------ARR11(3)                                                                 <---------MYB52(2) -----TOE2(3)                     <------MYB83                                    --------->MYB46(3) ---->DOF2                        <------MYB46(1)                              <------ZmHOX2a(1) >TOE2(3)                <------ZmHOX2a(2)                                   <---------TOE2(3) ------->ARR11(3)--------->REM1(2)<---------MYB46(3)                     <------------CBF--------->LBD16 --DOF2       <---------ANAC46  <--------P       <-------TEIL         --------->LBD16   <---------LBD16   agttcttctggctctggtgtgaagacgatcacttgttggttctatctaagtttcatcgtcttcgttgtactccgaaattgaggaacaaaccctggagagt  474200                    <---------ZAT14                             <------------CBF                    --------->At4g35610                        --------->MYB52(2)                <---------ARR14(2)                      ------>NtERF2                --------->ARR14(2)                   --------->LBD16             <---------ZAT6                          ------>NtERF2      --------->LBD16                            --------->ARR14(2)     <---------ANAC46                            <---------ARR14(2)                         <--------     --------->ANAC55(2)                        <---------CCA1(2)                           <--------     <---------ANAC55(2)                    <---------ANAC46 <---------MYB52(1)           <----------     <---------ANAC58               <---------MYB46(3)--------->RAP2.3(1)                 -----------     <---------ANAC58              <---------AtMYB61--------->ANAC46               ------>MYB83     <---------ANAC55(1)      <-----------HVH21 <---------GLK1(1)   <---------ANAC46     <-----------   xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------AtMYB61--------->DEAR3(1)          -------->P  --------->ARR14(2)--------->ZAT14--------->ALFIN1--------->MYB46(3)              ------>MYB46(1)  <---------ARR14(2)<---------At4g35610<---------MYB46(3)  ----------->GT1       --------->AtMYB61   cacagttccgtgttagtgtttctgcagcgttgtgtcagtggtggttttgtatatccgccgctcgttaattgtggagatggagaccaactcttctcttttt  474300                          <------MYB83                          <------MYB46(1)                         --------->MYB59                     --------->ATHB12                   <---------TOE1(2)               <---------ANAC46                   <---------TOE2(2)        --------->AHL20(2)                --------->ANAC58            <---------AHL20(2)                                    ---                --------->ANAC58          <---------YAB1                                          <-- -DAG2       --------->STY1(2)           <---------AHL20(2)                                <---------ANAC46 --DOF2      <---------STY1(2)           <---------AHL20(1)   <----------DOF2            --------->ARR14(2) -----AGL15  --------->ZAT2            <---------YAB1       ------->TEIL                 --------->ARR11(3) ---->AGL15  <---------ZAT2       <---------TOE2(3)<---------ANAC58                      <---------ARR11(3) ------AGL2------>ZmHOX2a(1) --------->ATHB12      <---------ANAC58                      <---------ARR14(2)   ggtttagtttctcctagctcgcatgatttggtcattgaggtattatttttttagcttgtatgaactttgttttagtagtcgtgatatgtagtatcttgta  474400          <---------REM1(1)         <---------TOE2(3)    --------->ALFIN1  --------->ANAC55(2)  <---------ANAC55(1)  <---------ANAC55(2)  <---------ANAC46             <---------AHL20(2)                  <---------RVE1(1)                <  <---------ANAC58     <------MYB83                               <---------ARR11(3)            <----  <---------ANAC58     <------MYB46(1)                            --------->ARR11(3)            <---- <-------TEIL        <---------WOX13(1)                           <---------GLK1(2)         <-------- ------>At4g35610  --------->ATHB12                      ---------->DOF2            <---------ANAC46< -------At4g35610 <---------YAB1                     <---------ANAC46<---------AHL20(2)     <--------   agatgcgtgttgatgtagttgtgattggtttgttttattgttttgtgactgtttggagtgaaagtttagattttttttgttttgttttgtagaggcttgc  474500           --------->TOE1(2)           --------------------->WRI1       --------->GLK1(1)                                        ------>NtERF2      <---------MYB46(3)                                     <---------LBD16  --------->ALFIN1                                         -------->P  <---------GLK1(1) ---------ANAC46                                         ----------->HVH21 -----ANAC58                                           --------->At4g35610                          - -----ANAC58------>ZmHOX2a(1)   <-------MYC3      <---------MYB52(1)  <---------ARR11(3)<---------At4g35610 -ANAC58<---------ARR14(2)      ------->MYC3     --------->TOE2(3)    --------->ARR11(3)--------->At4g35610 -----------RAV1(1)<-----------GT1  <---------ANAC46   <---------At4g35610   <---------ZAT6         - -ANAC58--------->ARR14(2)     <---------O2  <---------GLK1(1) --------->LBD16          --------->ZAT14   ttctgtgggggttcctaagaaataccgctctaaacgtggcctagtggaattcgttagagctaacccggccaagatttcagagttagtctctgctctctta  474600                                                         <---------ZAT14                                                         --------->At4g35610           ----------->GT1                               <---------At4g35610  --------->DAG2     ----------->TGA1                                    <---------ZAT2      ---------->DOF2     ----------->HVH21          --------->GLK1(2) ---------->DOF2    ------>MYB46(1)   <---------At4g35610     ---------->DOF2     <------NtERF2         ------>MYB83     ===============   --------->At4g35610<------ZmHOX2a(1)   --------->MYB46(3)         -------->P       <-----------RAV1(2) ----->MYB46(1)      <---------YAB1      --------->SPL7  --------->ZAT2  --------->AtLEC2 ----->MYB83      --------->TOE1(2)     --------->MYB52(1)          ------>ZmHOX2a(1)<-------TEIL   -   cctacagatgacgatgttaaactaggattgaaagaagctagggaacggcctcgaaagtctgctgtgagtcctaccatgaaaaagaggttcagggagagca  474700              <--------P  <------ZmHOX2a(1)              <---------WOX13(1)            --------->MYB55(2)           <---------AtMYB61           --------->ALFIN1       --------->ZAT14  --------->LBD16       <---------ZAT14 <---------LBD16    --------->At4g35610--------->HSFB2a(2)                                                     <-----   <-----------RAV1(1) <---------HSFB2a(2)         --------->GLK1(2)                  <-----------RAV1(1)   ================================RAV           <------ZmHOX2a(1)  --------->YAB1    --------->MYB52(2) ==============RAV     <-----------RAV1(2)     <---------TOE2(3)  ------->TEIL  <---------ANAC46 ------>TEIL<---------MYB46(3) ------->TEIL<----------DOF2       <---------GLK1(2)--------->ALFIN1   tgaatatgctgcagtggttgatgttccaggatgagcctgatgtttctttgaggaatctagcaaaactgaatcttgatcagcgaggtgtttgtggctctgt  474800  Previous    Next  AGI:  At5g02310.1    Description:  PRT6 (PROTEOLYSIS 6); ubiquitin-protein ligase. similar to unnamed protein product [Vitis vinifera] (GB:CAO15650.1); similar to hypothetical protein OsI_000376 [Oryza sativa (indica cultivar-group)] (GB:EAY72529.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ70921.1); contains InterPro domain Zinc finger, N-recognin; (InterPro:IPR003126); contains InterPro domain Zinc finger, N-recognin, metazoa (InterPro:IPR013993); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 474277    to: 482781    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version