Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                           ----------->HVH21                                                                         --------->TOE1(2)                                                                        --------->DEAR3(2)                                                                        ===============HOX2a_HOX2a                                                                        ------>ZmHOX2a(2)                                                                       --------->CCA1(2)                                                                       <------ZmHOX2a(2)                                                                       ================HOX2a_HOX2a                                                                      --------->ARR14(2)                                                                      <---------ARR14(2)                                                                      --------->AGP1           ------>ZmHOX2a(2)                                        ----------->ARR10          <------ZmHOX2a(2)                                   ----------->RAV1(1)          ------>ZmHOX2a(2)         <---------ARR11(3)               --------->MYB52(1)  ------>NtERF2               <------ZmHOX2a(2)         --------->ARR11(3)               <---------DOF5.7(2)--------->DEAR3(1) =================HOX2a_HOX2a -------->YAB1              <---------ANAC58            --------->MYB52(1)      ==================HOX2a_HOX2a --------ATHB12             <---------ANAC58   ------->TEIL --------->At4g35610 <------ZmHOX2a(1)   aatcaaattgagatctcatacagacacatttcgagctaaatagataacgaatttcaaataccagcgccattagatccgacgaggagacaccgatcgctgg  468900                                                                             <---------ANAC55(2)                                                                             --------->ANAC58                                                                             --------->ANAC55(2)                                                                             --------->ANAC55(1)                                                                        ----------->HVH21                                                                      <---------ANAC58                                                                      <---------ANAC55(1)                                                                      --------->ANAC55(2)                                                                      <---------ANAC58     ------>ZmHOX2a(2)                                                                      <---------ANAC55(2)  ==========                                                   <---------WRKY18(1)----------->GT1     ===========                                                  ----------->HVH21   <---------ANAC46    <------ZmHOX2a(2)                                               <---------MYB46(3)    <-------TEIL        --------->ARR14(3)                                              <---------ANAC46      --------->CCA1(2)    --------->ARR14(2)                                            --------->MYB55(2)     --------->ARR14(2)    --------->ARR11(3)                                            <---------MYB46(3)     <---------ARR14(2)    <---------ARR11(3)                --------->ARR11(3)         --------->ALFIN1       ================================HOX2a_HOX2a                <---------ARR11(3)         <---------DEAR3(1)     <------ZmHOX2a(1)      <---------ARR14(2)               --------->GLK1(1)           <---------AtMYB61      ===============================HOX2a_HOX2a               <---------GLK1(1)          <---------MYB52(1)    --------->LBD16          <---------ARR14(3)         <---------WOX13(1)              --------->LBD16       <---------HSFB2a(2)      --------->GLK1(1)       --------->ATHB12                 --------->LBD16        <---------LBD16          <---------GLK1(1)      <---------YAB1                   <---------LBD16         --------->HSFB2a(2) <---------LBD16 <-    <---------ANAC58                 ====================================HOX2a_HOX2a --------->LBD16    <---------ANAC58                 <------ZmHOX2a(2)    <---------DEAR3(2) --------->ANAC58   -----   aattaagcgtgattgagaaatcttcaataagtggtttcgatcccggtggtggatgaccgtcgattccaggatacgtgaaacgtaatccggagatctcaac  469000                                   --------->ICU4                                 <---------------AGL15                                 --------------->AGL15                                ----------------->AGL2                                ----------------->AGL3                                <-----------------AGL3                               ------>NtERF2                              --------->ANAC46                              --------->DREB2C(2)                              --------->DEAR3(1)                             --------->MYB46(3)                            <---------At5g28300                            <---------ATERF1(1)                          ----------->HVH21                         <-----------HVH21          <----------DOF2<-----------TGA1        <---------At4g35610<---------ALFIN1   <---------GLK1(1)    --------->ANAC46                                       <---------DAG2 =========================HOX2a_HOX2a     <-----------GT1                      <----------DOF2 =========================HOX2a_HOX2a  --------------->AtSPL3                 *TSS --------MYB52(1)     ------>ZmHOX2a(1)--------------->AtSPL8       <---------DAG2     <<<<<<<<<TBF1 ---->MYB46(3)     ------>ZmHOX2a(1)   <---------------AtSPL3       <----------DOF2<-----------GT1   cgttgaattccgcttcttctcctcctccgtcaccgccatttttagtacctctcccttgctcttctctctgctttacttatacttttttcttcttcagacg  469100                                                                             <---------DAG2                                                                          <---------ANAC46                                                                       --------->ALFIN1                                                                      <-------MYC3                                                                      ------->MYC2                                                                      <-------MYC2                                                                      ------->MYC3                                                                      <-------PIF5                                                                      ------->PIF5                                                                     ================================                                                                     ================================                                                                     ===================bZIP_DOF                                                                     <---------ANAC58                                                                     --------->ANAC55(2)                                                                     --------->TGA1a                                                                     <---------TGA1a                  --------->DAG2                                     <---------bZIP60(2)         <------MYB83                                                <---------O2         <------MYB46(1)            <---------------AGL15            --------->O2        <---------MYB46(3)          --------------->AGL15            <---------ANAC55(2)      <-------GAMYB  --------->ARR11(3)                              <---------ANAC58              ==     --------->MYB111(1)           ----------------->AGL3            ----------->RAV1(2)           --     --------->MYB52(2)            <-----------------AGL3           ------------>OsbHLH66      ======     <---------MYB46(3)       --------->ANAC58                    ----------->HVH21            <-----     --------->MYB111(2)      --------->ANAC46                  <---------At4g35610   --------->ANAC58     --------->MYB55(2)       --------->ANAC58                  --------->At4g35610 --------->CCA1(2)     --------->MYB46(2)<------------CBF                     --------->TOE2(3)<----------DOF2<--------    <--------P   ---------->DOF2  ------>NtERF2            <---------ICU4<------NtERF2--------->ANAC58   tttttggtagttggtgaagaaaagttattgaaacgacaccatttttggtgaagttttttaaacattagctcacgtggcgctttaagagacgctagttctt  469200                                  <---------ANAC58                                  <---------ANAC46                                  <---------ANAC58                               --------->ALFIN1                             --------->TGA1a                             --------->O2                             <---------O2                                                          <-                             <---------ANAC58                                                      --                             <---------bZIP60(2)                                                  <--                             <---------ANAC58                                                     ---                             <---------TGA1a                                                      <--                  --------->AHL20(2)                                                              ---                  --------->AHL20(1)                                                              ---       --------->bZIP60(1)   <---------ANAC46                     <------NtERF2             ---------       --------->O2         <-----------------------TaNAC69(2)   ------>NtERF2            <---------YAB1       <---------O2         <------NtERF2                       --------->ANAC46         --------->TOE2(3)       <---------bZIP60(1) ------>NtERF2                        --------->DEAR3(1)      --------->ATHB12 =====bZIP_DOF   <---------AHL20(2)    --------->REM1(2)        <---------DEAR3(1)      --------->YAB1 =========bZIP_DOF<---------AHL20(2)<------NtERF2          <---------ICU4               <---------ICU4 ======================================bZIP_DOF            --------->MYB52(1)          <---------ATHB12 -------->DOF2   --------->AHL20(2)------>NtERF2           <-----------GT1      <----------ID1    <-- ======================================bZIP_DOF         --------->YAB1          ----------->GT1 *TSS- -----DOF2    --------->AHL20(2) <------NtERF2         <---------YAB1<---------MYB52(1)--------->ICU4 -ARR11(3)----------->GT1 ----------->HVH21           --------->AHL20(2)      ---------->DOF2   -----   taaaagacgacgtcgttaaattaattaggcgacgtggcgcgagtagagaccatcgatataataacgacgccgttttgagaaaaagaaaaatcattaataa  469300                                              ------>ZmHOX2a(2)  --------->ZAT14                           --------->ARR11(3)  <---------ZAT14                           <---------ARR11(3) -----ZmHOX2a(2)                            --------->ARR14(2) ------->CCA1(2)                            <---------AGP1 -------AGP1                                <---------ARR14(2) ------>AGP1                               <---------CCA1(2) -------ARR14(2)                      --------->ARR14(2) ------>ARR14(2)                      <---------ARR14(2)            --------->AHL20(2)        ------- ------>ARR11(3)                  <---------HSFB2a(2)        --------->LBD16        <---------At5g28300 >YAB1<-----------RAV1(1)         --------->HSFB2a(2)       <---------LBD16        <-----------GT1 -------ARR11(3)                  <---------LBD16          <---------LBD16   <------NtERF2<----------DOF2 ----->ZmHOX2a(2)             --------->GLK1(1)       <---------GLK1(2)      <---------At4g35610 ------>ARR10                 <---------GLK1(1)<----------DOF2 ----------->GT1   <----------DOF2 <---   gatctgtactgttgttcttcatcgtctcgctgatttctcggatttggatctttgaagattatcgggggaaaaaaatggcagcgatttacagtctttacat  469400                                      ------>ZmHOX2a(2)                                      XXXXXXXXXXXXXXXXXXXXX>MIR831                                      ====================HOX2a_HOX2a                                     <------ZmHOX2a(2)                      <---------ZAT18                                     =====================HOX2a_HOX2a       --------->ZAT18                                    <---------ARR11(3)                 <---------ANAC46                                    --------->ARR11(3)                 <---------ANAC58             --------->MYB55(2)  <-------TEIL                          <---------ANAC58            <---------AtMYB61    --------->SPL7                       <---------ZAT2         <-----------RAV1(1) --------->ANAC46                         <---------At4g35610      --------->ARR14(2)     <---------------AtSPL3                   --------->ZAT2      --------->GLK1(2)      <---------------AtSPL8             ------>ZmHOX2a(2)      <---------ARR14(2)  <---------REM1(2)                --------->HSFB2a(2) <-----------GT1         <---------HSFB2a(2)               <---------HSFB2a(2)  <----------DOF2 -->ANAC55(2)<---------MYB46(3)<---------SPL7      ------>ZmHOX2a(1) <---------TOE1(2) ------ICU4<---------MYB52(1)--------------->AtSPL8====================HOX2a_HOX2a  <---------AtLEC2   aattaacaaatctggtggtttgatattctacaaggtacgatctctccatcttcctcttgttctcgatctcgcagcttgtggactttccatgtctagagaa  469500                                                      <------ZmHOX2a(2)                      <---------LBD16                 ==========================HOX2a_HOX2a            ----------->GT1                          --------->ARR11(3)           <---------TOE2(3)       ---------->DOF2   <---------ARR11(3)                             -        <---------WOX13(1)       --------->AtMYB61  <---------At4g35610  <------ZmHOX2a(1)         --   tgacgagctaattgatgttaatttcgagggatagaccaaaagatgaaatttttgagatcactaggtttagtagaaggagtgttttcggtattaatctagg  469600                                                                           <------ZmHOX2a(1)                                                                        <---------LBD16             <              ---------->DOF2                             <---------ARR14(2)                        - ---------->GT1                              <---------ANAC46 ----------->GT1          --------->MYB52(1) ------->ALFIN1   --------->ARR11(3)   ------>ZmHOX2a(2)  --------->ARR14(2)          ---------->DOF2   ggttgtgaatagctactaaagaaattggatttgaattttgatctgttctgtgtgtgtttggatttgggaaaaattcaggattgtggaacaaagggaagaa  469700                                                                       <-----------HVH21                                                                    ----------->RAV1(2)                                                                    --------->At4g35610                                                             --------->At4g35610                                                             --------->ZAT2                                                             <---------At4g35610             <---------ANAC58                             --------->At4g35610             <---------ANAC58                 --------->ANAC58      <---------At4g35610            --        --------->YAB1                        --------->ANAC46  <-----------HVH21                  --        --------->ATHB12                      --------->ANAC58 <----------DOF2                     <- --------->CCA1(2)                           ------->TEIL --------->ZAT2                  <------NtERF2 ---------ARR14(2)     --------->STY1(2)   <---------ZAT18<---------ZAT2        <---------MYB46(3) <- -------->ARR14(2)     <---------STY1(2)   --------->ZAT14<---------At4g35610   <----------DOF2<-----   tggatacgaatgatagcttgagagtagctagtttatggcattcaatgcacgccatttctcagcagctttcacctgtcaatggctgttctggcatcgagct  469800  Previous    Next  AGI:  At5g02270.1    Description:  ATNAP9 (Non-intrinsic ABC protein 9). Identical to Non-intrinsic ABC protein 9 (NAP9) [Arabidopsis Thaliana] (GB:Q9LZ98); similar to POP1 [Arabidopsis thaliana] (TAIR:AT5G44110.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17385.1); contains InterPro domain ABC transporter related; (InterPro:IPR003439); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR003593) Range:  from: 467106    to: 469078    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g02280.1    Description:  synbindin, putative. similar to synbindin, putative [Arabidopsis thaliana] (TAIR:AT1G51160.1); similar to synbindin, putative [Arabidopsis thaliana] (TAIR:AT1G51160.2); similar to hypothetical protein [Vitis vinifera] (GB:CAN66318.1); contains InterPro domain Longin-like; (InterPro:IPR011012); contains InterPro domain Sybindin-like protein; (InterPro:IPR007233) Range:  from: 469296    to: 470283    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version