Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                           <----------DOF2                                               <------ZmHOX2a(2)        <---------ANAC58                                          ---------->DOF2               <---------ANAC58                                    <---------ANAC58       --------->ANAC58        <---------YAB1                                    <---------ANAC58       --------->ANAC58      --------->YAB1              ----------->GT1   <---------DAG2<---------ARR11(3)     <---------MYB52(1)     ----------->GT1         <-----------GT1  --------->ARR11(3)    <-------GAMYB<---------ICU4 ----- ---------->DOF2     ---------->DOF2<---------ANAC46<---------O2   <-----------RAV1(1)         <-----   aaacaaagagagaaaatggtaaaaaaagatgaaacctttcgtataaaagatcagacatggcaagcaagactgttgctttagaatcatgagaaacctgatc  421600       <-------TEIL    <------MYB83--------->ANAC46    <------MYB46(1)   --------->MYB52(2)   --------->MYB59   --------->MYB46(2)       --------->ANAC58   <---------AtMYB61        --------->ANAC58   --------->MYB111(1) --------->At4g35610  <---------MYB55(1)   --------->ZAT14 <---------MYB52(1)    <---------ZAT14                    --------->At4g35610 ---->YAB1      --------->ANAC58                          <---------At4g35610 ----YAB1       --------->ANAC58                       <-------TEIL                --------->GLK1(1)<   atcgttaggttgattcccaagacactgctcaagcactagcatcccttgagcataagattcatctgcaaaaattcagaattcacagagacccatttcgaat  421700                                                                             ---------->DOF2                                                                       <---------ANAC58                                                                       <---------ANAC58        ------                                               ---------->DOF2         <---------ANAC46      ------->GAMYB                                     <-----------GT1                 ------>MYB46(1)        ---------                                 ------>ZmHOX2a(1)             ----------->HVH21          <---------- -----------HVH21               --------->TOE2(3)  <---------ARR11(3)------>MYB83  ----------->GT1   tcagtcagagacttagagtttaaacacctaaaatccttataactatagagaaagacctgatttttgtgacctagcgtgagaaagagcgtaattaaccatc  421800                                                                                                  ---                                                                                                 <---                                                                                               ------                                                                                             <-------                                                                                            <--------                                                                                            <--------                                                                                            ------>ZmHOX2a(2)                                                                                           <---------                                                                                           <------ZmHOX2a(2)                                                                                          --------->ARR11(3)                                                                                          --------->ARR14(2)                                                                                          <---------ARR14(2)                                                                                          <---------ARR11(3)                                                                                      ------->GAMYB                                                                                   --------->MYB52(1)                                                           <---------ANAC46       ----------->HVH21                                                --------->YAB1                  ------>ZmHOX2a(1)<---                                                --------->TOE2(3)               ===================HOX2a_HOX2a                                             --------->WOX13(1)                 ==================HOX2a_HOX2a         <---------YAB1               --------->At5g28300 <------NtERF2       <-----------------AGL1 --->At4g35610                        --------->LBD16   <---------ANAC58      ----------------->AGL1 >MYB46(3)--------->ATHB12         <---------At5g28300  <---------ANAC58<---------TOE2(3)<---------GLK1(1) -GT1----------->RAV1(1)          <-----------GT1       <---------ANAC46<---------TOE1(3)--------->GLK1(1)   tgaatagcaacatgattcgcgtttggaacgctgatttcaccgtgaatcaatctcaatggcgtcgagtatcgaataaggtttcctctaacggagatcgtgc  421900                                           --------->LBD16                                          <---------ANAC46                      <---------ANAC58     ------->TEIL                        <---------LBD16                   <---------ANAC58  --------->ANAC58                    <------NtERF2            --------->ARR14(3)  --------->ANAC58            <---------ARR14(2)   <---------YAB1          <---------ANAC58 --->NtERF2                   --------->GLK1(2)  --------->YAB1<---------ARR14(3) ------ATERF1(1)       <---------LBD16----------->RAV1(2)      --------->ARR11(3) --->SPL7          <----------DOF2    --------->ATERF1(1)      <-----------ARR10<---------ANAC58 --SPL7          <---------At4g35610  <---------ZAT2           <---------ARR14(2) -ANAC58      --------->At4g35610     --------->ZAT2<---------ICU4       <-----------GT1 -ANAC58      <---------At4g35610     <---------At4g35610      --------->ARR14(2)              <----- ------AtSPL3 ------>NtERF2   --------->ARR14(2)<---------ATHB12     <----------DOF2           <----- ------PCF2 <---------RAP2.6(2)       --------->At4g35610      <---------ARR11(3)            --------   ggccacgaatcgttgccgctgcttctctggagaatttggcagctgcgcgaatcataatcgctcaatatcttcttttttcttgtcttgctcagaagtaaag  422000                       <---------ARR11(3)                       --------->ARR11(3)                      <---------GLK1(1)                      --------->GLK1(1)                      <---------At4g35610                     ----------->ARR10                    --------->ATERF1(1)                    <------NtERF2                   --------->LBD16                  <---------DEAR3(1)                 <------NtERF2                 --------->ATERF1(1)                 <---------At4g35610                 <---------LBD16                 --------->At4g35610                <---------ERF1        <-----------HVH21                ------>NtERF2  --------->ANAC46                <---------ATERF1(1)   <-----------TGA1                <---------DEAR3(2)   --------->bZIP60(1)                <---------RAP2.3(1)  --------->O2               <---------At1g77200   <---------bZIP60(1)               <---------RAP2.3(3)  <------NtERF2                                                  --               <---------DEAR3(1)  <---------ATERF1(1)                                     --------->GLK1(2) <-----------GT1<---------ORA47(2) ------>NtERF2                ----------->GT1      ----------->GT1< ----TOE2(3)   <---------DREB2C(2) <-----------HVH21      ------------>CBF      <------MYB83       -- ----TOE1(3) <-----------HVH21------>ZmHOX2a(1)   --------->ZAT18               <------MYB46(1)   <-- -->DOF2  <---------DOF5.7(2)*TSS --------->DEAR3(1)------------>CBF           --------->MYB59-------   gttttactcagtaaacgtcggcggagctcttcctcgccgtcgtcactaagagtggccaatttcaatcggtataatttgagtttggtttggaaaaatcggt  422100                                                                       <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                    <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                   <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                  <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <------MYB83                                             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <------MYB46(1)                                          <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     <---------ANAC46                                           <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     <---------ANAC58                                           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <---------ANAC58                                          <------------------------ANAC81 <---------WOX13(1)                                       <---------GLK1(2) ------->ATHB51                                        <---------HSFB2a(2)                     <----- ------------CBF                                       --------->HSFB2a(2)             <-----------RAV1(1) ------->ATHB12         ------>MYB83                 ------>ZmHOX2a(1)<xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) -------YAB1            ------>MYB46(1)      ---------->DOF2  <---------AHL20(2)  <------------------ ---->GT1      <---------YAB1      --------->DAG2--------->ARR14(2)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   ataattggcttggttttgtgataaccaaataaaccaaaaattgacccaaaagttcctctagaattttttttttttttttttttttttttttgttgttgtg  422200                                                           <-----------GT1                                              <---------ICU4                                              -------->ATHB1       <---------ARR11(3)                     --------->YAB1       --------->ARR11(3)                     --------->ATHB12                                 ------   ---------->DOF2                           <---------ATHB12   <----------DOF2          <---------ZAT6 ----AtMYB61    >>>>>>>>>>>>>>>>>LFY   ----------->GT1  <---------ARR14(2)      --------->ATHB12<---- ------ANAC81<---------YAB1          <----------DOF2    --------->ARR14(2)     <---------YAB1  <-----   gtttttaaagaacttataatccattgttgtatatgttcactttgtaaatcattgtgcaaattcactctttacatttgcaatatgatttgaagtgttatct  422300                                                                                                  ---                                                                                                -----                                                                                               ------                                                                                              -------                                                                                            ------>MYB46(1)                                                                                            ------>MYB83                                                                                            -------->P                                                                                           --------->MYB55(1)                                                                                          <---------MYB111(2)                                                                                          --------->AtMYB61                                                                                          <---------MYB46(2)                                                                                          <---------MYB111(1)                                                                                          <---------MYB59                                                                                        <------------                                                                                    --------->ANAC58           <---------TOE2(2)         <---------YAB1                           <---------ANAC58<------   <------MYB46(1)               ----------->GT1                              <---------ANAC46<------   <------MYB83            --------->At4g35610                                <---------ANAC58<------ --->TOE2(3)               <---------At4g35610                            ------->TEIL<---------ARR11(3) -----------AGL15     <---------ANAC58                          ----------->GT1 --------->AtLEC2----- ------------AGL3     <---------ANAC58--------->ICU4           <---------ARR11(3)   --------->ANAC58   caatttggtttcatatgttattttgcttcagcttgaagtaatattgagcaagtagtactcatcaatatgttatatgtatgtcttgcaagatacctaccca  422400                  <---------ZAT2    --------->TOE2(3)    --------->TOE1(3) ------>AtMYB61   ----------->RAV1(2) ->MYB46(1)------->GAMYB                                                                           -- --->ANAC46--------->AtMYB61  --------->ANAC58                                                     <- -->MYB46(3)     ------>NtERF2--------->ANAC58                                <-----------GT1      <- -----------TaNAC69(2)     <---------AHL20(2)                              --------->YAB1          -- ---MYB111(1)   <---------ALFIN1                                           <--------HAHB4     ------>MYB83 ---MYB111(2)------>MYB46(1)  --------->ANAC46                             <---------ICU4     ------>MYB46(1) ---MYB55(2) ------>MYB83<---------YAB1                --------->GLK1(2)  <---------YAB1     -------- ->MYB83  --------->MYB46(3)---------->DOF2   <---------ZAT14        ------>ZmHOX2a(2)     --------->MYB46(3)   ccaaaaccttcaacctccccacctgttattaaaagcaagtctatagactctagtgacattcttggcttcgatctctattattacctttcaaaaaccaaca  422500  Previous    Next  AGI:  At5g02130.1    Description:  NDP1 (RANDOM POTATO CDNA CLONE); binding. similar to unknown [Populus trichocarpa] (GB:ABK92545.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) Range:  from: 419655    to: 422029    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version