Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                              <--------                                                                                           <---------                                                                                           <---------                                                                                           <---------RAP2.6(3)                                                                                          >>>>>>>>>>AtTINY2                                                                                        ------>MYB83      --------->TOE2(3)                                                                 -------->P --------->CCA1(2)                                     --------->ATHB12                 ------>MYB46(1) -------->ARR11(3)                               <---------At4g35610                    --------->MYB52(1) ---------ARR11(3)                               --------->At4g35610                   --------->MYB55(1) -------ZAT6                               <---------HSFB2a(2)                     ------>ZmHOX2a(1) -NtERF2                                   --------->HSFB2a(2)                   <---------ANAC58   - --ANAC46    <---------ARR11(3)           <---------LBD16                        <---------ANAC58   - --ANAC58    --------->ARR11(3)        <---------GLK1(1)                       <-----------HVH21    - --ANAC58--------->REM1(2)             --------->GLK1(1)              ---------->DOF2 <---------MYB46(2)   gagatataccttgaagacctcttcatcgtaaacagagggagatttctggagagctctccattggccatcgttgaaagcccatgtcctgcctaccgtcatt  362500    <----------CDC5                      <---------O2   --------->LBD16          <---------MYB52(1)  ------->GAMYB            <-----------TGA1 --------->MYB46(3)        <-----------HVH21 -MYB52(1)                <---------ANAC58            --------->At4g35610 --HVH21  <---------ANAC46<---------ANAC58            --------->ZAT2 --TGA1   <---------ANAC58--------->ANAC55(2)         <---------ZAT2 ----->MYB46(1)     <---------ALFIN1     <---------ANAC46        --------->YAB1 ------->P<---------ANAC58--------->ANAC46            <---------At4g35610                 --------->AtLEC2 ----->MYB83<---------MYB46(3)  <----------DOF2   <-----------HVH21               <---------REM1(1)   ccaaccgcagaggcttgttggaacacttccgtcactttgcctctcgtggaattgtcagctgcaagagtcatcatccagtatgtgttgaagccattcacat  362600                                                                      --------->GLK1(2)                                                                     <---------GLK1(2)                                       --------->ZAT14               <---------ARR14(2)                         <---------ANAC58                        -------->P                <---------ZAT6         <---------ZAT14           ------>MYB46(1)         <---------------AGL15      ------>ZmHOX2a(1)            ------>MYB83  <-----------GT1  -----         --------------->AGL15 <----------DOF2                   --------->MYB52(1)     ---------->DOF2  <---------MYB46(3)     <---------ANAC58  <---------ALFIN1     ------>ZmHOX2a(1)   --------->AtLEC2   agaatggttgtccatttagagtgaattgcatccctttcctctgcaccatctcccattgttcttctcctaccgattctgagttaaccctgcaaaagcagcc  362700                                  ----------->HVH21                                 --------->LBD16                                <---------ANAC58                                --------->ANAC55(2)                                <---------ANAC55(1)                                <---------ANAC46                                <---------ANAC55(2)                                <---------ANAC58                           <---------ICU4                          <---------ATHB51                          --------->AHL20(2)                          <---------AHL20(2)       <---------ZAT6                      --------->AHL20(2)      --------->YAB1                    ----------->GT1       <---------AHL20(2)                    --------->ANAC58    ------>MYB83--------->TOE2(3)        <XXXXXXXXXXXXXXXXXXXXXMIR173    ------>MYB46(1)                                   --------->ZAT18 ---->TOE2(3)       --------->ANAC58  <---------MYB59                                     <---------ZAT14   tcaatctgtcattcttctctgcaagtaaataattccgtgaccaaataatcgtaatgttagtactcatgggactcgctgtccaagtctgcgagagctctgt  362800                                                                       <----------DOF2                                                                     <------MYB83                    --------->At4g35610                              <------MYB46(1)             --------->YAB1   <---------ZAT18                        <---------MYB46(3)            <---------YAB1    <---------ZAT14      <------MYB46(1)  <---------TOE1(2)          <---------ICU4      --------->ZAT14      <------MYB83     <---------TOE2(2)             *TSS          --------->YAB1 --------->ZAT14          --------->MYB59  <---------MYB52(1)            ----         --------->ICU4  <---------ZAT14         <--------P       <-------GAMYB         <---------GLK1(2)      --------->ICU4--------->LBD16    <---------YAB1   ------>ZmHOX2a(1)  <---------TOE2(3) ------>ZmHOX2a(1)   tttgagtcagaattatgaaaaccgcagaacagagcacaattctgaatccaagttggtccttcatttttcgttggtttatggatgagaacagattcctctt  362900              --------->MYB59       <-----------------AG       <---------AtLEC2       <---------ANAC58       <---------ANAC58     --------->ARR14(2)       <---------ANAC46     <---------ARR14(2)   <---------ANAC58        <---------CCA1(2)                               --------->TOE1(3)   <---------ANAC58      --------->YAB1                             --------->AHL20(2)              <   <-------GAMYB        <-------TEIL                           --------->AHL20(2)                <---  <---------MYB46(3)<---------ARR11(3)                     --------->AHL20(2)         --------->ANAC46  <------MYB46(1)   --------->ARR11(3)              ------->TEIL   --------->AHL20(2) --------->ANAC58  <------MYB83<---------TOE1(3)            --------->AHL20(2)  <---------AHL20(2)     --------->ANAC58 ----->ATHB12 <---------TOE2(3)       ------------>CBF    <---------YAB1   --------->TOE2(3)     ----   catttggttgcatgtttaggtatatattcatatccacagagtcaataaaacatggacttgattatttaaataaaaaacattaacttacaaggcaagggaa  363000                                                                                                  <--                                                                                                  ---                                                                                                  <--                                                                                                  <--                                                                                                  <--                                                                                                  ===                                                                                                  <--                                                                                                  <--             --------->At4g35610                                     <------ZmHOX2a(1)            <--             <---------At4g35610                        --------->ARR11(3)                        ---     <---------TOE2(2)                        <-----------RAV1(1)   --------->ZAT14               <--     <---------TOE1(2)                       ------->MYC2           <---------ZAT14               ---    ------>ZmHOX2a(1)       --------->CCA1(2)<-------MYC3         --------->At4g35610             ===   <---------TOE1(1)   ---------->DOF2       <-------MYC4       --------->YAB1                  ----- -----------HVH21   --------->ANAC58         <-------MYC2    --------->WOX13(1)                 <---- ------At4g35610    --------->ANAC58  ---------->DOF2   <---------ARR11(3)                 ========== ----->At4g35610  ---------->DOF2------->TEIL------->MYC3<---------RVE1(1)                 ----------   gcggtcctaggtttcagcccaaaagcaaagagatgaaacttgaagcacatgttggagagatattaatcagaggactggaatgtgagacaactccaaagta  363100 <-----------HVH21 -------ANAC55(1)              ------->GAMYB ------>ANAC55(2)             <---------MYB55(2)                                         ------>MYB83 -------ANAC58      <-------TEIL                                                         -------->P -------ANAC46     --------->CCA1(2)                                                     ------>MYB46(1) -------ANAC55(2)  --------->ARR14(1)                                                  --------->MYB46(3) =====================================MYC_MYB                                          <---------MYB59 -------bZIP60(2) <---------ARR14(2)                                          <---------HSFB2a(1) -------TGA1a     --------->ARR14(2)                                          --------->HSFC1(2) -------O2  <---------ZAT2    --------->MYB46(3)     <-----------HVH21        <---------HSFC1(2) ------>O2  --------->ZAT2   ------>MYB46(1)        --------->bZIP60(2)       <---------ZAT2 -------ANAC58    --------->ARR11(1)         <---------At4g35610              --------->ZAT2       -- ------>TGA1a     <---------GLK1(2)          --------->ZAT2                  --------->ANAC58   <---- ======================================MYC_MYB ----------->HVH21             --------->ANAC58   ----- ---->MYB52(1)  ----------->ARR10            <---------ZAT2             <---------LBD16--------->AtMYB61 -------GT1--------->ANAC58  ------>MYB83    --------->At4g35610     <---------ANAC58  <---------MYB111(1) =======bZIP_DOF<---------TOE2(3) <---------ALFIN1<---------bZIP60(2)<---------ANAC58 --------->DEAR3(2) >DOF2     --------->ANAC58  -------->P <---------ZAT6       <---------AHL20(2)       --------->MYB46(3)   acgtgtcactgccaagctaagattcgaagccaacccccactagagttagctgacatgtcatattcaatttttcttgcgcaagcttcggaccaacccatct  363200                                                  ----------->HVH21                                                 <-----------HVH21                                               <-----------------AGL1                                           <----------DOF2                                    <------                                         ------>ZmHOX2a(1)                             <-------TEIL                                     --------->ARR14(2)                             <---------ANAC46                                     <---------ARR14(2)                             <---------ANAC58                                    --------->GLK1(1)                               <---------ANAC55(2)                                    <---------GLK1(1)   <------ZmHOX2a(1)           --------->ANAC55(2)                                --------->ANAC58<---------ANAC58                    <---------ANAC58                              ---------->DOF2  ----------------->AGL1               <---------ANAC55(1)                            ------>ZmHOX2a(2) <---------At5g28300               <----------DOF2 -------->DOF2              ===================================HOX2a_HOX2a      ===================== ------DOF2     --------->ZAT18 --------->ANAC58<---------ANAC58             <-----------GT1 -------- ---->TOE2(3)---------->DOF2====================HOX2a_HOX2a     <---------ZAT18<---------AtLEC2   ttaaagtcatttcacaaatgcacaatgtgatctaaagcaaatcctctttaccgtgacaggaactagggaacttatgtttttgcattacgtgcatataaaa  363300  --------->O2  <---------TGA1a  <---------O2  --------->TGA1a  --------->ANAC55(2)                                       --------->ARR11(3)  --------->bZIP60(2)                                       <---------ARR11(3)  --------->ANAC58                                      ---------->DOF2  --------->ANAC58                                    <---------YAB1  --------->ANAC46             <---------ANAC58      --------->TOE2(3)  --------->ANAC55(1)          <---------ANAC58     <---------ICU4  <---------ANAC55(2)          <---------ANAC46     <--------HAHB4                                 -- ---AHL20(2)     --------->ARR14(2)                <---------YAB1                    ---------->DOF2 ===========bZIP_DOF     --------->ATHB12          --------->ICU4            --------->ZAT6 --------- ->AHL20(2)      <---------ARR14(2)          --------->MYB52(1)     <---------MYB52(1)      <--------   tgacacgttactcttagcaaatttgcatcatttgcgttttgtctcagtaactgatcattaaagaacttccattaggcatacactagctaaagacatctca  363400  Previous    Next  AGI:  At5g01920.1    Description:  STN8 (state transition 8); kinase. similar to STN7 (STT7 HOMOLOG STN7), kinase/ protein kinase [Arabidopsis thaliana] (TAIR:AT1G68830.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48887.1); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) Range:  from: 359104    to: 362901    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g01930.1    Description:  (1-4)-beta-mannan endohydrolase, putative. Identical to Mannan endo-1,4-beta-mannosidase 6 precursor (MAN6) [Arabidopsis Thaliana] (GB:Q9LZV3); similar to (1-4)-beta-mannan endohydrolase, putative [Arabidopsis thaliana] (TAIR:AT5G66460.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48890.1); contains InterPro domain Glycoside hydrolase, family 5; (InterPro:IPR001547); contains InterPro domain Glycoside hydrolase, catalytic core; (InterPro:IPR013781) Range:  from: 361078    to: 362898    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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