Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                    --------->ATHB12                   <-------GAMYB  <---------ICU4                            ----------->GT1                  <---------MYB46(3)                                     <---------MYB46(3)                  --------->MYB52(2)          ---------->DOF2          <-------GAMYB      <-----------GT1            <---------YAB1                   <---------ZAT18      <---------At4g35610 <---------YAB1   <-----------RAV1(1)       ------>ZmHOX2a(1)     --------->ZAT14    <-----------GT1 --------->ICU4------------>MYB.PH3(2)     --------->TOE1(3)      --------->ZAT18 <---------ICU4    - -GAMYB    ------>MYB83        <---------At4g35610<---------GLK1(2)   <-----------RAV1(1)   ------>ZmHOX2a(1) --DEAR3(1)------>MYB46(1)--------->O2     --------->TOE2(3)      <---------ZAT14--------->ICU4<-----   gttatgattcaccaaatagtttgttgccacttctgatgatttcatccttaaagattgtttcttctcagtgctctgttgttgtaatattcacctccttctt  338500                                                                                        --------->ANAC46                                                                                    --------->ANAC58                                                                                    --------->ANAC58                                                                              <---------LBD16                                                                              --------->LBD16                                                                            ------>ZmHOX2a(2)  <-----                                                                          --------->ARR14(2)  <------      <----------DOF2                                                     <---------ARR14(2) <-------GAMYB      <---------DAG2                                                    ------>ZmHOX2a(1)    --------  <---------MYB52(1)                                                  ----------->RAV1(2)   --------- <----------DOF2        <---------AHL20(2)                          <---------ARR14(2)  --------->ANAC58 -------->TOE2(3)       --------->AHL20(2)                          --------->ARR14(2)  --------->ANAC58 -----DOF2     <-----------GT1                              <---------------AtSPL8<---------PCF2  <--   ttcctttactttatattttacttcattttattcttcacttcatttttgatatatagagattacatgtacaaatcctgatccgagggacccaagacagtta  338600         <---------ANAC46         --------->ANAC58      ----------->HVH21                                          --------------->AGL15 ----AHL20(2)                                              <---------GLK1(2)           <---------ARR11(3) ---MYB52(1)   --------->AHL20(2)               <---------ANAC46<---------ANAC58       --------->ARR14(2) ->At5g28300 <---------CCA1(2) <---------AHL20(2)          --------->ARR11(3)          --------->ARR11(3) -->GT1  --------->ANAC58      --------->AHL20(2)          <---------ARR11(3)         --------->CCA1(1) -------WOX13(1)     --------->ANAC46       <---------ANAC46    <---------ANAC58      --------->RVE1(1)   attgaaaactgacgcatatatatacacaaacaaataaatgcaagtgacttatgtgtatatagattttcttgttagagacagacaaaaaatatcttccaag  338700                                                           --------->LBD16                                                          --------->ANAC58                                                          <---------ANAC55(2)                                                          --------->ANAC46                                                          --------->ANAC58                          -                                                 <---------YAB1                              --------                                              --------->ICU4                                <--------                                              <---------YAB1                               --------->AHL20(2)                                           <---------YAB1 --------->ANAC55(2)   --------->KAN4(2)  --              <---------ZAT14            ----------->GT1  --------->ANAC55(1)  --------->KAN4(1)<----          --------->GLK1(2)     <---------TGA1a <---------AHL20(1)             <---------KAN4(1)<----         <---------GLK1(2)      --------->TGA1a <---------AHL20(2)           <---------GLK1(2) ------   tgccaagaacagagtctgtagttgtcttattctcacttgtgaattgttattatttttctcccgtaactacatatcgatagattgttccacatatataata  338800                                                             <---------DAG2                                                          <---------ALFIN1                         --                                                       --------->PCF2                             <--                                                    <---------HSFC1(2)                 --------->TOE1(3) -------->AHL20(1)                                  --------->HSFC1(2)            <---------MYB52(2) ->YAB1                                             <---------HSFB2a(1)         ------->GAMYB   *TSS- -AHL20(2) --------->ANAC58                         <------MYB46(1)             --------->TOE2(3) <<< ------->AHL20(2)              ---------->DOF2      <------MYB83               --------->MYB46(3)---- -----ICU4 --------->ANAC58---------->DOF2          --------->HSFB2a(1)    --------->ARR11(3)   ----- -----AHL20(2)      ----------->GT1                --------->MYB59     ---------->DOF2 --------->TOE2(3) --->AHL20(2)     ---------->DOF2            ---------->DOF2 <----------DOF2   <----------ID1 -------   aatatatgatgccaagaaaacaaagaaaaaaaagaaagagaaaacagaaaaggaaggtccccacttttgtctaaaaagataaccacaaacctcagagaca  338900                                                    <---------TGA1a                                                    --------->TGA1a                                                    <---------O2                                                    --------->O2                                   --                                                    <---------ANAC55(2)                           <--                                                    --------->ANAC55(2)                          ----         ---------->DOF2                            --------->ANAC58                            <----    <----------ID1                                  --------->ANAC46                            ----- ------->YAB1                                       ==================================bZIP_DOF <----- -------ATHB12                                 --------->YAB1                                  <----- --------->DOF2                                <---------ICU4--------->LBD16                   ------ <<<<<<ARR2               ---------->DOF2  ------>ZmHOX2a(1)<---------HSFB2a(2)               ------>NtERF2 -------------------->ANAC81       ------>ZmHOX2a(1)--------->ANAC58                         -------- ---->WOX13(1)            ====================================bZIP_DOF     ---------->DOF2   -------- ----->CBF             --------->TOE2(3)------>ZmHOX2a(1)   --------->HSFB2a(2)              <-------   atcaaagagacaaaagcagagtttaacttaaagagtcctgtcctcctcatcatcacgtctctcccgaacacaaattcaaaagaagacacaaatcgacgcc  339000                                            <------NtERF2                                           ------>NtERF2                                           --------->LBD16                                          <---------ANAC46                                         <------NtERF2                                         <---------LBD16                                         --------->ATERF1(1)                                        ------>NtERF2                                        <---------ORA47(2)                                        <---------RAP2.6(1)                                        <---------ATERF1(1)                                        <---------RRTF1(1)                                        <---------DEAR4(2)                                        <---------RAP2.3(1)                                       <---------RRTF1(2)                                       <---------DEAR3(1)                                       --------->DEAR3(1)                                       <---------ATERF1(2)          <------NtERF2                                       <---------RRTF1(3)           --------->ATERF1(1)                                       <---------DREB2C(2)         ------>NtERF2                                       <---------RAP2.6(2)         <---------MYB46(3)                                       <---------RAP2.3(2)         --------->LBD16                                       <---------RAP2.3(3)        <---------ANAC46      <---------At4g35610             <---------ABI4(1)           <---------DEAR3(1)     --------------------->WRI1      <---------ATERF1(1)          --------->ALFIN1 ------->ARR14(2)                   <---------TGA1a              <------NtERF2 ----NtERF2                         --------->ANAC46             --------->ATERF1(1) ----->LBD16                        --------->O2                 <---------LBD16 -----ANAC46                        <---------O2                <---------RAP2.3(1) ---->DEAR3(1)                      --------->TGA1a             <---------DEAR4(2) -NtERF2                            <---------DEAR3(1)         <---------RAP2.3(2) ----LBD16                         <---------LBD16             <---------DEAR3(1) --->ATERF1(1)                    <---------ALFIN1            --------->At4g35610 ->DEAR3(1)          <---------At4g35610<---------ERF1        --------->ATERF1(1)                 <-- ->ANAC46     ------->TEIL--------->HSFB2a(2)                 <---------At4g35610  --------->ANAC46 --DEAR3(1) <-------TEIL  <---------HSFB2a(2)           --------->At4g35610     <-------TEIL   ------   ggagactcatcggatgcatcgactgctactggaatcccacggcggcgggaacgagacgagcggaagcggcgggggagatgggtacacgagggacatgaac  339100                            <---------ARR14(2)                            <-----------ARR10                            --------->ARR14(2)                          <---------RAP2.3(1)                         <---------RAP2.6(2)                         <---------RAP2.3(2)                         <---------ANAC58                         <---------RAP2.3(3)                     <---------ANAC58                                           <---------ANAC58                 --------->YAB1                                                 <---------ANAC58                <---------YAB1                                               <---------MYB52(1)  --------->ANAC58   <---------ANAC58                                       --------->LBD16       <--  --------->ANAC58  <---------ICU4                                        <---------LBD16         <--  --------->ANAC46 <---------YAB1      --------->ZAT18     --------->At4g35610 <---------ZAT18    <-- -------------------WRI1 <---------ANAC58<---------At4g35610         <---------GLK1(2)         <----- ->TEIL --------->YAB1  <---------LBD16<---------ZAT18     <---------At4g35610--------->ALFIN1 ------   ttcgacgcaaacatggtgatcatacttgcggctcttctctgcgcgctgatactagcgcttgggctgaattcgattctccggtgcgcgatgcgatgcggtt  339200                           <---------DEAR3(1)                          --------->SPL7                         ------>NtERF2                        ----------->HVH21                       <------NtERF2                       --------->ATERF1(1)                      <---------MYB46(3)                      ------>NtERF2                      --------->LBD16                      <---------ATERF1(1)                     <---------ANAC46                     --------->ALFIN1                     <---------DEAR3(1)                    <---------LBD16                    --------->ATERF1(1)                    <---------ABI4(1)                   <---------ERF1                   <---------RRTF1(1)                   ------>NtERF2                   <---------RAP2.6(1)                   <---------DEAR4(2)                   <---------ATERF1(1)                   <---------RAP2.3(1)                  <---------RAP2.6(2)                  --------->ATERF1(2)                  <---------ATERF1(2)                  <---------DEAR3(1)                  --------->ALFIN1                  <---------RAP2.3(3)                  <---------RAP2.3(2)                  <---------RRTF1(2)                  <---------RRTF1(3)                  <---------ANAC46                  --------->DEAR3(1)                 --------->ATERF1(1)                 <---------ABI4(1)                 ------>NtERF2                 <------NtERF2                ------>NtERF2                <---------RAP2.6(1)                <---------ATERF1(1)      --------->ZAT2                <---------RAP2.3(1)      <---------At4g35610                                 --------                <---------RRTF1(1)       <---------ZAT2                                      <-------               <---------RRTF1(2)  ------>NtERF2                                     <---------SPL7               <---------RAP2.3(2) ----------->RAV1(1)                          --------->ZAT2           ----------->RAV1(2)  <------NtERF2                                   <---------At4g35610           ------>ZmHOX2a(1)   ------>NtERF2                                    --------->At4g35610      --------->YAB1<------NtERF2  <---------RAP2.6(3)                       <---------MYB52(1)     <---------YAB1<---------ORA47(2)    --------->At4g35610               --------->HSFB2a(2) <----- -------ANAC46 <---------DEAR3(1) ----------->HVH21                   --------->HSFC1(2)     <------- -------ANAC58<---------LBD16 --------->ALFIN1   ---------->DOF2      <---------HSFC1(2)<---------ANAC55(2) -------ANAC58<---------At4g35610 --------->ETT(2)                    <---------HSFB2a(1)   --------- ----ARR14(2) --------->At4g35610 <---------ETT(1)<---------TOE2(3)   --------->HSFB2a(1)  <--------- --->ARR14(2)<-----------RAV1(1)<---------ATERF1(1)        <---------ZAT14 <---------HSFB2a(2)<------   tcgggttatcatcctctgcggcggcggggacggtggccgacagagctggattaaagaagagagaactgaagaagtttccagtagctgagtacgggtcggg  339300                        --------->ANAC58                                     <---------ANAC46                        --------->ANAC58                                    --------->ATERF1(1)                       <---------ZAT14                                      <------NtERF2                       --------->ZAT18               <------NtERF2         ------>NtERF2                       <---------ZAT18            --------->ATERF1(1)      <---------RAP2.6(3)                --------->ATERF1(1)               <---------ORA47(1)      --------->RAP2.3(2)                <------NtERF2                     --------->SPL7          <---------ATERF1(2)               <---------ATERF1(1)               ------>NtERF2            --------->ATERF1(2)               ------>NtERF2                    <---------SPL7            --------->RAP2.6(2)              --------->DEAR3(1)                ----------->HVH21         --------->DEAR3(1)     <---------YAB1   --------->ALFIN1          --------->DEAR3(1)       --------->ERF1 ->ETT(1)     ----------->HVH21               <---------LBD16      <---------ZAT14   <-----------GT1 --DEAR3(1)   <---------DEAR3(1)          --------->ARR14(2)     <---------------AtSPL3 -NtERF2     --------->ATERF1(1)          <---------GLK1(1)     <---------ANAC58     --------->YAB1 --ANAC46    <------NtERF2                <---------ARR14(2)    <---------ANAC58--------->REM1(2) >ALFIN1     --------->RAP2.3(1)          --------->GLK1(1)   --------->ALFIN1--------->LBD16      <- --HVH21    <---------RAP2.3(1)     <---------LBD16<---------DEAR3(1)    --------->RAP2.3(1)     <--- ---LBD16--------->MYB52(1)     <-----------HVH21<---------ATERF1(1)   <-----------RAV1(1)       ----   ggaagtgaagatagcggcgacggagtgcgcaatctgtctgggggaattcgcggacggcgagagagtgcgagtactgccgccgtgtaatcacagtttccac  339400  Previous    Next  AGI:  At5g01880.1    Description:  zinc finger (C3HC4-type RING finger) family protein. Identical to RING-H2 finger protein ATL5A (ATL5A) [Arabidopsis Thaliana] (GB:Q9LZV8); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G10910.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN70348.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 338896    to: 340250    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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