Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                            ----------->GT1      <---------TOE1(3)                                            --------->AHL20(2)      <---------TOE2(3)                           --------->YAB1 ----------->GT1   <---------YAB1      --------->MYB59     ---------->DOF2   ----------->GT1    ---------->DOF2    <-----------GT1 ------>TEIL          --------->GLK1(1)  <---------ANAC46  ----------->RAV1(1)   --------->YAB1  <--- -----TOE2(3)    <---------ANAC46      <-----------GT1  --------->YAB1--------->ICU4             ----   tgtatatttaggtttcattgtgggaattcaaagaaatgttgttacctggtaattagaatcacaacaaaagtaaatatggtgaattatcaatttggaatca  287200                                                                                                 <---                                                   <---------GLK1(2)                           ------                                                   --------->ARR14(2)                    <------MYB46(1)                      <---------GLK1(2)            --------->ARR11(3)                    <------MYB83                      <---------ARR11(3)           --------->ARR11(1)                   --------->MYB59                      --------->ARR11(3)   --------->At4g35610                         <--------P----                 ------>MYB83       --------->YAB1 <---------ARR11(3)                <---------REM1(1)               --------->TOE1(2)  --------->AHL20(2)                               <---------ANAC46-- ------ANAC55(2) ------>MYB46(1)  <---------AHL20(2)--------->CCA1(2)            <-----------HVH21 <- ----->ANAC55(2) -------->P      --------->YAB1    <---------ARR14(2)           <---------ZAT6 <-----   cgttttcaaatatcaaacctacaagatttttcttataaaaataacatctgcaagatttgcattctaactagagagagaactagtgtcatgtaggtatata  287300    <-----------GT1                  <----------DOF2 ------AHL20(2)                      <---------DAG2 --->AHL20(2)                      <---------TOE1(2)                                        <-------- ----->AHL20(2)                 --------->ANAC58                                 ------->TEIL ------->AHL20(2)           <---------ALFIN1      <---------TOE1(3)           <---------ANAC55(2) --------AHL20(2) <-----------------------TaNAC69(2)            <---------ANAC55(2) <---------AHL20(2) ----AHL20(2) ----------->GT1   --------->ANAC58  <---------TOE2(3)           --------->ANAC55(2)   tatatataacaaaatatagtgacataaacaacactcgcacttttttttcgtcaaggtatacatattacataaaaacaaaaacgtattttttttttatcca  287400                                         <---------AHL20(2)                                         --------->AHL20(2)                                        --------->AHL20(2)                                        <---------AHL20(2)                                        --------->YAB1                                  <------MYB46(1)                                  <------MYB83                  <---------YAB1                                  <---------ANAC46            --------------->AGL15                                  ----------->GT1             <---------------AGL15                                 --------->MYB59       <---------ANAC58                             <-----------RAV1(1)       <---------ANAC58                         <---------AHL20(1)      <---------CCA1(1)                         <---------AHL20(2)      <---------RVE1(1)               ----------->GT1   <---------MYB46(3) <-----------GT1       --------->ANAC58    --------->YAB1       --------->AHL20(1)     --------->ARR11(3)        --------->ANAC58   <---------ATHB12      --------->ARR11(3)     <---------ARR11(3)      ---------->DOF2     <-------TEIL ---GT1   --------->ANAC46  <---------YAB1<---------YAB1 <---------MYB52(1)             <-------TEIL   gacaaatcatacccccaaggtaactaaaatattgttgggtaattaaaatagatatttccgtttgctataaatgagaaagcacttacaacatacatacatt  287500                                                                                                  xxx                                                                                                 <---                                                                                               <-----                                                                                               ------                                                                                               ------                                                                                               <-----                                                                                               <-----                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                               ------                                                                                              -------                                                                                              <------                                                                                             --------                                                                                            <--------                                                                                           xxxxxxxxxx                                                                                           xxxxxxxxxx                                                                                           <---------ZAT18                                                                                          xxxxxxxxxxx                                                                                         --------->ANAC58                                                                                    xxxxxxxxxxxxxxxx>smallRNA(i)                                                                                    xxxxxxxxxxxxxxxxx                                                                                    xxxxxxxxxxxxxxxx>smallRNA(s)                                                                                    xxxxxxxxxxxxxxxxx                                                                                    xxxxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxxxx                                                                                   *TSS  --------->ANAC58                                                                                   XXXXXXXXXXXXXXXXXX                                                                                   xxxxxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxx>smallRNA(s)                                                                                   xxxxxxxxxxxxxxxx>smallRNA(i)                                                         <---------REM1(1)         xxxxxxxxxxxxxxxxxx                                       <---------ANAC46  <---------YAB1            xxxxxxxxxxxxxxxxxx                                       <-----------RAV1(1)                         xxxxxxxxxxxxxxxxxx                                    <---------MYB52(1) --------->YAB1              xxxxxxxxxxxxxxxxxx                              ------>NtERF2           --------->ICU4               xxxxxxxxxxxxxxxxxx                             ------>NtERF2     <------NtERF2                       xxxxxxxxxxxxxxxxxx                             --------->LBD16 --------->ETT(1)  <---------ANAC46    XXXXXXXXXXXXXXXXXX                            --------->LBD16  <---------DEAR3(1)--------->ALFIN1   xxxxxxxxxxxxxxxxxxx  <----------DOF2          <---------LBD16  <---------------------WRI1            xxxxxxxxxxxxxxxxxxx   ctctctttctctctctctctctctctcatcccggcccagttatgtggtcggagagaatgatgaaggtgtgtgatgagcaagatggagaagcagggcacgt  287600 xxxxxxxxxxxxxxxxx>smallRNA(fl3) ----TEIL --PIF4 ->PIF4 ->MYC3 --MYC2 --PIF5 --MYC3 ->MYC4 --MYC4 ->PIF5 ->MYC2 -->TGA1a ---TGA1a ---->OsbHLH66 ----OsbHLH66 xxxxxx>smallRNA(s) xxxxxxxxxx>smallRNA(se3) xxxxxxxxx>smallRNA(se3) xxx>smallRNA(si3) xx>smallRNA(fl3) xx>smallRNA(se3) x>smallRNA(si3) xxxx>smallRNA(si3) XX>MIR164A/B x>smallRNA(le3) xxx>smallRNA(se3) xx>smallRNA(se3) xx>smallRNA(si3) xxx>smallRNA(si3) x>smallRNA(se3) >smallRNA(se3) xx>smallRNA(le3) xxx>smallRNA(le3) x>smallRNA(i2) xx>smallRNA(i2)                               --------->LBD16 xx>smallRNA(l2)                              --------->ANAC46                  <---------ANAC46 x>smallRNA(l2)                              <---------LBD16                    <---------ANAC58    x x>smallRNA(fl3)                          --------->CCA1(2)                     <---------ANAC58    x xx>smallRNA(fl3)                        --------->ARR14(2)                 <-------GAMYB           x xxx>smallRNA(fl3)                       <---------ARR14(2)                 --------->REM1(2)      xx xx>smallRNA(s2)                  <---------ANAC55(1)              <---------ANAC46               xxx XX>MIR164C    <-----------GT1    <---------ANAC58                 <---------ANAC58       --------->CCA1(2) xx>smallRNA(fl3)                 <---------ANAC58                 --------->ALFIN1      --------->ARR11(3) xx>smallRNA(si3)                 <---------ANAC46                 <---------ANAC58    <---------YAB1   gcattactagctcatatatacactctcaccacaaatgcgtgtatatatgcggaattttgtgatatagatgtgtgtgtgtgttgagtgtgatgatatggat  287700                                                                                         --------->KAN4(1)                                                                                         <---------KAN4(1)                                                                                        ---------->TaMYB80                                                                                   --------->ALFIN1                                                                                  <-------MYC2                                                                                  <-------MYC3                                                                                  ------->MYC2               xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                   <-------PIF4             xxxxxxxxxxxxxxxx>smallRNA(s)                                         ------->PIF4             xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                   ------->MYC3             xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                   --------->TOE1(2)             xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                   <-------PIF5             xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                   ------->MYC4            ------->MYC3     --------->YAB1                                       <-------MYC4            <-------MYC3     <---------ICU4                                       ------->PIF5            xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                  <---------TGA1a            xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                   --------->O2            xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                  --------->TGA1a     xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                          <---------O2     xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         ----------->TGA1                 <---------PIF3(3)     xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------ALFIN1                         --------->PIF3(3)  --------->MYB52(2)        --------->ICU4      ----------->HVH21               ------------>OsbHLH66 xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   --------->ANAC46                        <---------ANAC55(2) xxxxxxxxxxxxxxxxxxx>smallRNA(se3)   --------->ANAC58                        --------->ANAC58 xxxxxxxxxxxxxxxxxxx>smallRNA(si3)   --------->ANAC58              <-------TEIL ------->TEIL xxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------ALFIN1      <----------ID1      --------->ANAC58       - xxxxxxxxxxxxxxxxx>smallRNA(fl3)   --------->AtMYB61  ----------->TGA1  <---------ZAT6  <---------KAN4(2)   gagttagttcttcatgtgcccatcttcaccatcatgaccactccaccttggtgacgatgacgacgagggttcaagtgttacgcacgtgggaatatactta  287800                                                                                                    -                                                                                                    -                                                                                                   --                         <---------ANAC46                                                          --                 <---------ANAC58                                                                  <-                 <---------ANAC46                                                                <---                 <---------ANAC58                                                                ----                <-------TEIL                                                                    -----              ------->MYC4                                                                      <----              ------->MYC3                                                                      -----              <-------MYC3                                                                      <----              <-------MYC2                                                                     ------              ------->MYC2                                                                     ------              <-------MYC4                                                                     ------              ------->PIF5                                 <------ZmHOX2a(1)                   <-----              <-------PIF5                               <---------TOE2(3)                   --------              ------->PIF4--------------->AtSPL8  <---------CCA1(2)                         <--------              <-------PIF4<---------------AtSPL8--------->ANAC55(2)                         <--------             --------->TGA1a                    <---------ANAC58                            <--------             <---------TGA1a<---------ZAT14     <---------ANAC55(2)<---------GLK1(1)        ---------             --------->O2<---------ANAC58       <---------ANAC46   <-----------GT1         <---------             <---------O2<---------ANAC58     ====================HOX2a_HOX2a              ----------            ------------>OsbHLH66 --------->STY1(2)--------->ARR14(2)              ------->TEIL<-----           <------------OsbHLH66  <---------STY1(2)<---------ARR14(2)         ---------->DOF2<-------           <---------ALFIN1 --------->ZAT18   ------>ZmHOX2a(2)   --------->ARR14(2)      <---------- ---------->GT1--------->ALFIN1   --------->ZAT2<---------ANAC58  <---------ARR14(2) <---------MYB59-   tatcgataaacacacacgtgcgtgtttgtgtgtacgagctagcctagatcgcgtattttgaggaagtagataccctctgcaaaagtacctatttacgtac  287900   ---------->DOF2 -------->ANAC58 -------->ANAC46 ------->SPL7 ----->TEIL ------TEIL ------SPL7 ----->TOE1(2) ---->ANAC58 -----ANAC58 ---->ANAC58 -----ANAC58 --->SPL7 --------->AtSPL3 ->TEIL --TEIL ->TOE2(2) -ANAC55(2)                                                                       ------->TEIL -ANAC58                                                                       --------->ANAC55(2) -ANAC58                                                                       --------->ANAC58 >ANAC55(2)                                                                    --------->ANAC46 ------AtSPL3                                                                  <---------ANAC55(2) ----->AtSPL3                                                                  --------->ANAC55(1) ----TOE1(2)                                                              --------->YAB1 --SPL7                                           ---------->DOF2    <---------AHL20(2)       <------ -GT1                               <--------P <-----------GT1   --------->AHL20(2)         --------- -------->ANAC58                <-----------RAV1(2)             <---------YAB1 --------->ANAC58   <--   gtacgcaaaggaagattagtcttgcgaaatagtatcaggttagtctaattaacaaagctatatgtgattatatatatgatcacgcatcttgatcagcgtc  288000                  <---------AHL20(2)                 --------->AHL20(1)                                                --------->CCA1(2)                 <---------AHL20(1)                                                <------ZmHOX2a(2)                 --------->AHL20(2)                                               <---------ARR11(3)        <---------AHL20(2)                                                        <---------ARR14(2)       --------->AHL20(2)                                                         --------->ARR14(2)   --------->AHL20(1)                                                             --------->ARR11(3)   <---------AHL20(1)   <-------TEIL                                              --------->AGP1 <---  <---------CCA1(2) <---------TOE2(3)            ------->TEIL                    --------->GLK1(1) -----HVH21  <---------AHL20(2)             <---------ICU4   <---------MYB52(1)  <---------GLK1(1) >At4g35610  --------->AHL20(2)            --------->ICU4   <-------GAMYB      <------ZmHOX2a(1) ---- -------ANAC46   <---------AHL20(2)      --------->YAB1   <---------ANAC46  <-----------RAV1(2) <----   gcttatatattatatataatttaatgttcataaaccatatgtgtcataatgaacatagtttcggttagcgagtattagacaggagatccaactatacaat  288100  Previous    Next  AGI:  At5g01747.1    Description:  MIR164/MIR164B; miRNA Range:  from: 287583    to: 287731    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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