Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                            <---------ICU4                                                          --------->ATHB51                                                         --------->ICU4    --------->MYB52(1)                                                         <---------ATHB51 --------->CCA1(2)                                                         <---------YAB1   --------->GLK1(1)                                                       --------->TOE2(3) --------->ARR14(2)                                                       <---------------AGL15                                                      <-----------------AGL2                     <---                                                      ----------------->AGL2              <---------ARR14(2)           <-----------GT1                            ----------------->AGL3              --------->ARR14(2)      <---------YAB1                                  <-----------------AGL3              --------->ARR11(3) ------>CCA1(2)                                  --------->ARR11(3)      <---------ARR14(2) ========= ----->ARR11(3)                                  <---------ARR11(3)      --------->ARR11(3) ------>ZmHOX2a(2) ------ARR11(3)                      <---------ARR11(3)--------->YAB1    <---------ARR11(3)========== ----->ARR11(1)                      --------->ARR11(3)--------------->AGL15  --------->ANAC46   <--- ----->ARR10             --------->ZAT6   --------->ATHB12--------->ATHB12<---------GLK1(1)<------ZmHOX2a(2) -->DOF2<---------AHL20(2)      <---------WOX13(1)<------ZmHOX2a(2)  ---------->DOF2  --------->MYB52(1)   atatgtttattattttctctctgtctaacaatagattgaaatcttgatggggatcatccataattggatactaaagatacccgataaaaaacgatctggc  263000                           --------->YAB1                           <-----------GT1                        <---------ICU4                 <-----------GT1                   <---------ZAT2                                  --       <-----------GT1<----------DOF2 <---------ZAT14                                              -- ------DAG2------>ZmHOX2a(1)          --------->At4g35610       --------->MYB46(3)                 -- =================HOX2a_HOX2a         --------->ZAT14      ------>ZmHOX2a(1)    <----------DOF2   <-- =================HOX2a_HOX2a       --------->ANAC46<---------GLK1(2)--------->YAB1              ---- -------DOF2  <----------DOF2  --------->ANAC46    --------->ZAT2   <---------ATHB12           <-----   tttatcgattttcctcctttaactctttattacaatccacagcacaaaaaaccagcttctccttcaacaaatcatagcctcgctttcgataaccaaaact  263100                                                                                                -----                                                                                               <-----       <------ZmHOX2a(1)                                                                      -------      ----------->GT1                                                                         <------     ----------->GT1                                                                          <------ ------->ANAC58                                                                              <------- ------->ANAC46                       --------->MYB46(3)                               <---------WOX13(1) ------->ANAC58                      >>>>>>>>>>>>>>>>>LFY                             <---------ARR14(2) -------TOE2(3)                      <<<<<<<<<<<<<<<<<LFY                             --------->ARR14(2) ----->MYB52(1)                     <-----------GT1 <----------DOF2              --------->MYB52(1) ----MYB52(2)  --------->TOE2(3)--------->YAB1<---------MYB46(3)   <---------CCA1(2)  <---------GLK1(2)   aacgaaacaggaaaaaaccatagtaccaaaactaaaataaaccactggctgtttctttgttaagttctcatatcaagtagacaaaacagattggccgatc  263200       <---------------AGL15     --------->YAB1                            --------->TOE1(2)    <------ZmHOX2a(2)     <---------AHL20(2)  <---------ZAT2    <---------TOE2(3) ->ZmHOX2a(2)             --------->AHL20(2)  <---------At4g35610        <---------AHL20(2) -ZmHOX2a(2)              <---------ATHB51    --------->At4g35610   <---------YAB1              ----- -->ARR14(2)       ----------->GT1            ----------->RAV1(2) --------->YAB1               <----- ---ARR14(2)    ---------->DOF2       --------->AHL20(2)----------->GT1 --------->AHL20(2)    ------- -----ARR10---------->DOF2--------->ICU4     ------->TEIL    <---------YAB1                  -------- --RAP2.6(3) <---------TOE2(3)     --------->YAB1    ------------>MYB.PH3(1)              --------->YAB1   tgcccgatcatattaaaggaaaggagaaataattctagcataaaatgcacctgagaaacagttattaatgaagattaaatgacaagagacaaacatacct  263300                                      <----------DOF2                                  <------ZmHOX2a(2)                                 --------->ARR11(3)                                 <---------ARR11(3)   --------->ANAC58 --------------->AGL15   --------->ANAC58 <---------------AGL15                       --------->ARR11(3)    --------->LBD16 ------>HVH21      ----------------->AGL2                       <---------ARR11(3)   <---------HSFC1(1) ----MYB59         <-----------------AGL3             --------->LBD16                --------->HSFB2a(2) ---->RAV1(2)      ----------------->AGL3            --------->HSFB2a(2)             <---------HSFB2a(2) ->MYB52(1) <---------AtLEC2 <------ZmHOX2a(1)       <---------HSFB2a(2)   ----------->GT1   gactcaaggcatttgcattgctccatttataggaagatcactttgaaacattcttccagagtacaatatctaagatgaggcaaaattccagaaaacaaac  263400                                       --------->YAB1                                       --------->ATHB12                                       <---------ICU4                                      <---------ATHB12                                      --------->ICU4                          --------->ANAC58                               ----------->GT1                                ----------->GT1               --------->AHL20(2)   --------->GLK1(1)                         --------->ANAC58        --------->ANAC46    ---------->DOF2      <-------TEIL             --------->ANAC58       -------->P        --------->ANAC58       *TSS                      --------->ANAC58     ------>ZmHOX2a(1)   --------->ANAC58   <---------ANAC55(2)     ----------->RAV1(1)          ----   ttgtgtccttaccccatatatatagacaaggaaaggagaaatcattacatatacatttggatgcagagaacaccagaagcaagaaaattttaagaagagg  263500                                                                                 --------->At4g35610          <---------ANAC46              ---------->DOF2          --------->At5g28300          <---------ANAC58         <---------------AGL15        =====================================          <---------ANAC58         --------------->AGL15        <---------------AGL15      --------->At4g35610         ==============================================MADS_MADS      <-------GAMYB               ----------------->AGL3        --------------->AGL15              <-      <---------At4g35610       <-----------GT1      <----------DOF2---------->DOF2--------->ZAT14---  ------------>AtMYB77<---------GLK1(2)<---------AHL20(2)      <-----------------AGL1         ------- ------->HVH21    ---------->DOF2 <-----------------AGL2       --------->ZAT6    <---------At4g35610   tgacagacagttgcgagcgtaaaagaaactcaaatttccatttaaagctaaacttcttttttcttacagtaaaagggaatttcagcacagacaacgtatt  263600                                            --------------->AtSPL8                                            <---------------AtSPL8                                  <---------------AGL15                                  --------->HSFC1(1)                --------->ARR14(2)<---------HSFC1(1)                <---------ARR11(3)--------------->AGL15                <---------ARR14(2)--------->HSFB2a(2)           ------>MYB46(1)  --------->ARR11(3)           ------>MYB83<---------DAG2      ---------->DOF2                                          < =================================================MADS_MADS     <-------TEIL              --------->At4g35610 --------AHL20(2)      <----------DOF2  >>>>>>>>>TBF1        ------>MYB83                 <---------At4g35610 ------>AHL20(2)--------->ARR11(3)<---------HSFB2a(2)   <-----------GT1          <----------DOF2   -- >TEIL   --------->TOE1(2)  <---------AHL20(1)  <-------TEIL ------>MYB46(1)<------ZmHOX2a(1)   -----   tttaatagaaacctacaatatcccgctttatatattctagaagaagaaagtacatttttcaccaaatgcatagaagaaggagacttttatgcagcatcct  263700                               <----------DOF2                                                   <---                          <---------ALFIN1                                                      -----                         --------->ANAC58                                                       -----                         --------->ANAC58                                                       -----                       <---------ALFIN1                         ----------->GT1                 -----                      --------->MYB46(3)                        <---------MYB46(3)            <------ ---------ICU4       --------->ANAC58                       --------->ATHB12             ---------->ID1 ------->MYB46(3)    --------->ANAC58              <---------ARR11(3)               <---------DAG2 ->ZmHOX2a(1)  <---------WOX13(1)                  --------->ARR11(3)<---------YAB1 <----------DOF2   aaccattaccaccattgatggacaagcacccctctttgtctgagcgaattgaagagctctaagcattggttataagtcttgttgtacttttggctccttt  263800                                                                                     <---------LBD16                                                                                    <---------LBD16                                                                            --------->ATHB12                                                                           --------->ICU4   <------ZmHOX2a(1)                                                       <---------YAB1 ------WRKY18(1)   <---------ZAT2                                        <---------ANAC58          <- ---->WRKY45       ----------->RAV1(2)                                   <---------ANAC58          -- ---->WRKY38(1)   ------>NtERF2            --------->MYB46(3)         ===========================HOX2a_HOX2a ------>HVH21    <---------ALFIN1     --------->ANAC58                =============================== ---->WRKY12   ------>NtERF2          --------->ANAC46                ------>ZmHOX2a(1)        <----- ----DOF2<---------ARR11(3)           --------->ANAC58              ----------->RAV1(2)   <------ZmHOX2a(2)   gaccaggacaacatctctgccacctgttgtaatggcattcaaggaacaactcatctattagacaaatcgctcctgtcttgattagcctcgggatcagatc  263900  Previous    Next  AGI:  At5g01700.1    Description:  protein phosphatase 2C, putative / PP2C, putative. similar to protein phosphatase 2C family protein / PP2C family protein [Arabidopsis thaliana] (TAIR:AT3G02750.2); similar to protein phosphatase 2C family protein / PP2C family protein [Arabidopsis thaliana] (TAIR:AT3G02750.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN65584.1); contains InterPro domain Protein phosphatase 2C-related; (InterPro:IPR001932); contains InterPro domain Protein phosphatase 2C; (InterPro:IPR015655); contains InterPro domain Protein phosphatase 2C, N-terminal (InterPro:IPR014045) Range:  from: 260723    to: 263448    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g01710.1    Description:  similar to methyltransferase [Arabidopsis thaliana] (TAIR:AT4G24805.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48800.1); contains InterPro domain Methyltransferase FkbM (InterPro:IPR006342) Range:  from: 263508    to: 265630    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g01712.1    Description:  CPuORF48 (Conserved peptide upstream open reading frame 48) Range:  from: 263508    to: 265630    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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