Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                              --------->AHL20(2)                                                                           --------->AHL20(2)                                                                        <---------AHL20(2)                                                                        --------->AHL20(2)                                                                       --------->AHL20(2)                                                                       <---------AHL20(2)                                                                 ------>ZmHOX2a(2)                                                                 ===============================HOX2a_HOX2a                                                               --------->ARR11(3)                                                               <---------ARR11(3)                                    --------->YAB1           ------>ZmHOX2a(1)  <---------ICU4    ------->TEIL                <---------AHL20(2)         ------>ZmHOX2a(2)<---------AHL20(2) ------->At4g35610              <---------YAB1             =====================================HOX2a_HOX2a --------At4g35610<-----------GT1  <---------YAB1        --------->ARR11(3)<---------AHL20(2) --DOF2<---------AHL20(2) <---------AHL20(2)    <---------AHL20(2)<----------DOF2        <------ZmHOX2a(1)   cagatgtattttttggtattttacacattttttttttattatagttttatttttttgttgatcctgatcttttttaaattaatacttataaggagtatta  257000                                                                     --------->YAB1                                                                    <---------YAB1                                                                <-------GAMYB                                                               <---------MYB46(3)              --------->AHL20(2)                               <------MYB46(1)              <---------AHL20(2)                               <------MYB83                 <--------          <---------AHL20(2)                                   --------->MYB52(2)         --------->AHL20(1)          --------->AHL20(2)       ------>ZmHOX2a(2)           ----------->GT1            <---------AHL20(1)         <---------YAB1            <---------MYB59           <--------P                  --------->AHL20(2)       <---------ICU4            --------->ARR11(3)        <------MYB46(1)        --------->ANAC58      --------->ICU4             <---------ARR11(3)        <------MYB83           --------->ANAC58      <---------YAB1       <<<<<<<<<MYB98              <---------STY1(2)          --------->AtLEC2   <-------TEIL    <----------DOF2<------ZmHOX2a(2)    --------->STY1(2)   --------->TOE2(3)---------   ctaggttgattattaattaatctttttttgttagggatctaacttcatggatttagtagctaggttggttattataacatcaacatgcaaaatatatatt  257100                                             --------->At4g35610                                             ----------->RAV1(2)                                         <---------ARR11(3)                                         --------->ARR11(3)                                        --------->YAB1                                       --------->ICU4                          <-----------RAV1(2)<---------At4g35610                     --------->WOX13(1)<---------YAB1                  --------->ANAC58   --------->YAB1                 <-----------GT1                  --------->ANAC58   <---------ICU4              <---------------AtSPL8                 --------->WOX13(1)  -------->HAHB4          <---------GLK1(2)       <-------MYC3<---------ATHB12 --------->ICU4           --------->ARR11(3)       ------->MYC3------------>CBF <---------YAB1           <---------ARR11(3)                 ----- -AHL20(1)     ------------>CBF   --------->YAB1     --------->AtLEC2               <-----------TBP - >AHL20(1)     <---------ZAT18   --------->ICU4----------->HVH21 --------------->AtSPL8         -----   acaaacacacatgtttgtgcaatcaatctcaggctataatgatgatcatctgaccatgctcaagatttttgtaccacacagaaaacatatatagaaaacc  257200                     ----------->GT1       <------ZmHOX2a(1)   ---------->DOF2                       ----------------->AGL3 ---->TOE1(3) <---------------AGL15    <------ZmHOX2a(1)  --------->AHL20(2)        <---------At4g35610 --------->DOF2  ---------->DOF2      ----------->GT1------------>CBF               --------->At4g35610 ---->TOE2(3) =====================================================================MADS_MADS     ----   ttaaaagtaggatgacctctaaagagaaataaagaacaagaggataaacaacatgtacaattaaacccctaaatatagctagagagagcagaaacaaaaa  257300                <---------ICU4               <-----------GT1            <---------AHL20(2)            <---------ICU4           <---------YAB1                                                   <----------DOF2           --------->ICU4                                                 <---------------AGL15         --------->ATHB51                                                 --------------->AGL15         <---------ICU4                                                  <-----------------AGL1  <---         --------->YAB1                --------->ANAC46             <---------ANAC58          <------         <--------HAHB4             ------->GAMYB                   <---------ANAC46         <-------        --------->AHL20(2)        <---------At4g35610     <-----------------AGL1             --------        --------->ICU4   <----------DOF2   ------------>CBF         <---------ANAC58        ------>MYB46(1) ------>DOF2--------->AHL20(2)    --------->At4g35610  <----------DOF2 <---------WRKY18(1)  ------>MYB83   aaagaagagaataattaatactttcttcttttcttcaactcacaacacaatctctctctttccctctatggcttgactctttaggggaaatacctagcag  257400                                                                      <-----------RAV1(2)                                                                    --------->ALFIN1                                                                  <------MYB83                                                                  <------MYB46(1)                                                                 <---------MYB46(3)                                                                 --------->MYB59                                                                 --------->MYB52(2)                                                                 <---------DEAR3(1)                                                       --------->ANAC58                             -                                                     <---------ANAC58 --------->ATERF1(1)           -                                            <---------WOX13(1)   --------->MYB111(1)                <                                           <---------ANAC58      --------->MYB55(2)        <------NtERF2                                     <------ZmHOX2a(1) --------->ANAC58                    <---------LBD16     ----------->GT1           <---------ZAT14       <---------ANAC58<-------TEIL          --------->LBD16    ----------->GT1            --------->SPL1(2) <----------DOF2 --------->MYB111(2)      <---------LBD16 ---ZmHOX2a(1)                 --------->ZAT14  <---------ANAC58 <---------AtMYB61       <---------LBD16 -----RAV1(2)                  --------->SPL7   <---------ANAC58 --------->MYB46(2) --------->ARR14(2) --ZAT2                <----------DOF2    --------->ATHB12      <---------MYB55(1)  <---------ARR14(2) ->ZAT2       <-----------GT1<---------SPL7<---------ANAC58     <--------P   <----------DOF2<------NtERF2   gagggaatggaaaatataaccaaaacttttcagtacggaggagttgattggctttgcgagccatgggtaggtgcaggctctttggggattggccggggag  257500                                                                   <----------DOF2                                                                <---------ARR14(2)                                                                <---------ARR11(1)                                                                <-----------ARR10                                                                ------->TEIL                                                                --------->ARR14(2)                                                                <---------ARR11(3)                                                               <---------ARR14(1)                                                               <---------CCA1(2)                                                             --------->ANAC55(2)                 <---                                                             <---------ANAC58              --------->HSFB2a(2)                                                             <---------ANAC58              <---------HSFB2a(2)                                                             <---------ANAC55(2)        <----------DOF2                                                            <---------LBD16            <----------DOF2    --------->At4g35610                        <----------DOF2--------->LBD16          <---------DAG2 -------->ARR14(2)                     --------->GLK1(1)    --------------->AtSPL8   ------>NtERF2 -------->GLK1(2)                ------>ZmHOX2a(1)     --------->ARR14(2)            ---------->ID1 ---------ARR14(2)    ------>ZmHOX2a(1)<---------GLK1(1)  <-----------GT1      <<<<<<<<<TBF1     ----   agaatccgctcaagtttgctcttcctcttcttctccttcagatttctgtcttttccatattttccgtatcttttcagtttcttcttcggccttttggaaa  257600                                                  --------->ATHB12                                                  --------->ATHB51                                                 <---------AHL20(2)                                               --------------->AGL15                                               <---------------AGL15                                              <-----------------AGL2                                              =======================================================                                              ----------------->AGL3                   <---------ANAC46           <-----------------AGL3----------->GT1                 --------->GLK1(2)  <---------ARR11(3)      <----------DOF2                <---------GLK1(2)   <-----------ARR10     --------->HSFB2a(1)              ----------------------->TaNAC69(2) <---------YAB1    <---------ZAT6        ------>ZmHOX2a(1)           --------->ARR14(2)    <---------HSFB2a(1) ------ARR14(2)--------->At4g35610  <---------ARR11(1)    <---------HSFC1(2) ----->ARR14(2)<---------At4g35610 <---------CCA1(2)      --------->HSFC1(2)   atttgcattcctcactcagatgctggtatacgtttccatatctaagcatctataattggaagctttctagtggaaaaatatggactagtcgtctcaaaaa  257700                                                                                    <----------------                                                                                    --------->SPL7                                                                        --------->At4g35610                                                                      ==============================HOX2a_HOX2a                                                                      ------>ZmHOX2a(2)                                                                      ===============HOX2a_HOX2a                                                                     ================HOX2a_HOX2a                                                                     ===============================HOX2a_HOX2a                                                                     --------->GLK1(1)         ------                                                                     <------ZmHOX2a(2)         ------                     <---------ANAC46                                <---------At4g35610       ------                --------->YAB1                                      --------->ARR14(2)         ------                <---------ICU4                                      --------->ARR11(3)       <------ZmHOX2a(1)               <---------ATHB51                                     <---------ARR11(3) <---------MYB52(1)            <---------------AGL15                                   <---------ARR14(2)<-------GAMYB <           <-----------------AGL2            ----------->GT1      ----------->ARR10<---------MYB52(1)         --------->AtLEC2                <---------AHL20(2)   --------->ZAT2      <---------SPL7    - ===========================MADS_MADS   --------->AHL20(2)    <---------ZAT2  <------ZmHOX2a(1)<-----   catgtatagccatgcccataatggtgtaaatgtgacttaatatttaatagtgaatttgtttgcaggctgggatctgcttaggaccgtccgttataggacg  257800    --------->ZAT6  --------->MYB52(1) -AGL1                                             --------->ARR14(2) --->ANAC55(2)                         --------->REM1(2)  --------->HSFB2a(2) --->ANAC58                          --------------->AtSPL8 --->ANAC58                          <---------------AtSPL8  ------>NtERF2 ----->GT1                          <---------ANAC58   ------>ZmHOX2a(1) ---------MYB52(2)                  <---------ANAC46  --------->TOE2(2)                --------->bZIP60(2) -------->MYB46(3)                  <---------ANAC58  --------->TOE1(2)                --------->REM1(1) ----ANAC55(2)             --------->ANAC46        <---------ARR14(2)         --------->ATHB12    <--   taacaaacagtacatggctacattcttctacgcgagaagcgtgtacataatcgaatccttcgaggccatatgttttctcttcatttgctacatcacaaca  257900  Previous    Next  AGI:  At5g01690.1    Description:  ATCHX27 (cation/hydrogen exchanger 27); monovalent cation:proton antiporter. similar to ATCHX26 (cation/hydrogen exchanger 26), monovalent cation:proton antiporter [Arabidopsis thaliana] (TAIR:AT5G01680.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21364.1) Range:  from: 257407    to: 260342    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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