Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                --------->ANAC58                              --------->ANAC58                       ----------->HVH21                      ------>ZmHOX2a(2)                      =============================HOX2a_HOX2a                     ==============================HOX2a_HOX2a        ====================HOX2a_HOX2a        <------ZmHOX2a(1) <---------WOX13(1)                <------NtERF2  <------NtERF2      <------ZmHOX2a(2)                    <---------DEAR3(1) -->ZmHOX2a(2)      --------->ARR11(3)                   <---------At4g35610 --ZmHOX2a(2)       <---------ARR11(3)                   --------->At4g35610                  <------ --->ARR11(3)       --------->ARR14(2)                <------ZmHOX2a(1)                      -------- ----ARR11(3)       <---------ARR14(2)                ---------->DOF2     <------ZmHOX2a(1)<---------ANAC58 ----ARR14(2)   =============HOX2a_HOX2a           <-----------RAV1(2) <------ZmHOX2a(1)   <---------ANAC58 --->ARR14(2)   <------ZmHOX2a(1)      --------->ALFIN1  --------->ATERF1(1) <------ZmHOX2a(1)<------ >DOF2  =====================HOX2a_HOX2a    <------ZmHOX2a(1)      --------->TOE1(2)      <---------MYB46(3)   cggccgaagaggataagaggacgatctgatggacggaagaggtagaggaagagccaggaagcggcgagacataggaggaggatgagagagaatgggtggg  241800                                                                                   ------>NtERF2                                                                                  --------->LBD16                                                                                <---------LBD16                                                                             <-----------HVH21                                                                            <---------ANAC58                                                                       <---------ARR14(2)                                    --------->ANAC58                   --------->ARR14(2)                                    --------->ANAC46                   <---------GLK1(2)                                    --------->ANAC55(1)              --------->LBD16  <---------LBD16                                    --------->ANAC55(2)             --------->ANAC55(2)                         ----------->RAV1(1)<---------At5g28300     --------->ANAC46  <------NtERF2                        <----------ID1     <-----------GT1          --------->HSFB2a(2) ---DEAR3(1)      <------ZmHOX2a(2) --------->YAB1                  <---------HSFB2a(2) ->ALFIN1   --------->TOE2(2)       --------->ANAC58       <------ZmHOX2a(1)<---------ANAC58 ---MYB46(3)--------->TOE1(2) --------->AtLEC2  --------->LBD16    <---------LBD16------>NtERF2    <-   cgagaagagagaaaccaaggatcagagcgacaatgcaaacgtaattcaccctgaaataagaggaatttttccggaatcgcgtcccggcctcggagagaga  241900                                          --------->SPL7                                          --------->RAP2.6(3)                                 ----------->HVH21                             <---------GLK1(1)                                                      -                             --------->At4g35610                                                  ---                             --------->GLK1(1)                                                   ----                        <---------HSFB2a(2)<---------DEAR3(1)                         ----------->HVH21                   ===============HOX2a_HOX2a                                         --------->WRKY12                  ================HOX2a_HOX2a                                         --------->WRKY38(1)                 <---------ARR14(2)     ----------->HVH21                    ----------->HVH21   ----                 --------->ARR14(2)     <---------SPL7        ----------->RAV1(1)    <---------MYB52(1)             <---------------------WRI1--------->ANAC58       --------->AtMYB61      --------->DOF5.7(2)          ---------->DOF2  <------ZmHOX2a(1)<---------ATERF1(1)  --------->DEAR3(1) <-------GAMYB----    <----------DOF2------>ZmHOX2a(2)   --------->ANAC58       <---------ALFIN1  <---------ALFIN1----- ----------RAV1(2)<------ZmHOX2a(2)   <---------LBD16      --------->AtMYB61<-----------HVH21   <----   gtcaggctttgtgaaagcggatcgatcgaggagctctgaccacggacggctacgagatagaccaccacagaccgtctcggtcacaccgttgacaaatgca  242000                                                                    <---------MYB46(3)                                                                <---------DEAR3(1)                                                                <---------ANAC58                             <---------MYB46(3)             <-------GAMYB                             ----------->GT1               <-----------RAV1(1)                       ----------->RAV1(1)             <---------ANAC46                       <---------ALFIN1              <---------MYB46(3)          <-------GAMYB--------->AtMYB61            <---------AtMYB61 <---------ANAC46         <---------MYB46(3)<---------At4g35610    <------MYB46(1)   --------->MYB55(2) -------->SPL7        --------->ANAC46            <------MYB83  <---------ANAC46 ------>DEAR3(1)      --------->MYB46(3)        <---------WOX13(1) <---------DEAR3(1) ----->ANAC46    <---------ARR14(2)          <---------YAB1<---------MYB46(3) ----->ANAC58    --------->ARR14(2)        <---------At4g35610  <---------ANAC58               <----- ----->ANAC58 <---------ANAC58 <---------ARR14(2)<---------MYB46(3)<---------AtMYB61        <-------- -->TEIL<---------AtMYB61 ------------>AtMYB77--------->ATHB12 <---------LBD16              --------- -----LBD16   <---------ANAC58--------->At5g28300<---------AtMYB61 --------->ALFIN1  <-----------RAV1(2)   cggacgactggaggttgcgattccaccacagcggttacaatcggaggctgattggtggtgtctgttgcggtggtggaaattggaagaacagggggatttg  242100                                                                                <---------ANAC58                                                                      <---------At4g35610  <---------ANAC55(2)                                                                      --------->At4g35610  <---------ANAC46 <-----------GT1                                                 <---------TOE2(3)    <---------ZAT6 ----MYB46(3)                        ----------->GT1      --------->ATHB12      <---------ANAC58 -ARR14(2)         <----------DOF2  ----------->GT1      <---------ATHB12       <---------ANAC46 >ARR14(2)      ---------->ID1  <---------TOE2(3)<------ZmHOX2a(1)  <--------P <---------LBD16-------   ttgacaccattcgattttgttcttttgggattttgagattggaaaattttaggagacgaatgatttagaggttgctgaagttgcggtagtgttatgtata  242200                                                                                          --------->YAB1             <---------ANAC58                                                           --------->AHL20(2)             <---------ANAC58                                                          --------->YAB1             --------->ANAC55(2)                --------->At4g35610                   --------->AHL20(2)             <---------ANAC55(2)                <---------At4g35610               --------->AHL20(2)        <---------ICU4         <---------YAB1 --------->REM1(1)                  --------->YAB1     -    <------ZmHOX2a(2)       <---------YAB1 <---------ANAC58         --------->ATHB12--------->YAB1  -  <------ZmHOX2a(1)<----------DOF2<-----------GT1 ----------->HVH21<-------TEIL --------->AHL20(2)--- >TEIL <---------YAB1 *TSS<----------DOF2  <---------ANAC58--------->GLK1(2)  --------->YAB1 <-------   tataggatcacaattacgcgtctttcaactttgattatacaccttgcttcatctgatagctaatctatattcatttgctaaaataaaaataaaaataacc  242300              <---------TOE2(2)                 <--------ATHB1              <---------TOE2(3)                 <---------ICU4                <-----------GT1             <-----------RAV1(2)<---------TOE2(3)                            --------->WRKY12      --------->YAB1            <---------TOE1(3)      --------->ATHB12      --------->WRKY38(1)     <---------YAB1          <----------DOF2    --------->YAB1               ----------->HVH21 ------ ----->ZmHOX2a(1)           <---------ANAC58   <---------ATHB12         <---------ZAT18       <------ -------->LBD16----------->GT1 --------->MYB52(1) <---------YAB1        --------->ZAT18      -------- -------->RAV1(2)           <---------ANAC58   <---------ATHB51         <-------TEIL  <---------TOE2(3) ----GT1<---------YAB1<---------AHL20(2)       --------->ICU4      ---------->DOF2 <---------YAB1   tcctgatattataactcaggttatttttttgcttaacgtagtttatacaataattcttgattacttaggcaaagtgcatttgaccattaatgttccagtc  242400                      --------->AHL20(1)                      <---------AHL20(1)        ----------------->AGL1      --------->YAB1    --------->HSFC1(2)<---------ARR11(3)    <---------HSFC1(2)--------->ARR11(3)    --------->HSFB2a(1)       --------->ZAT6                                    ------>ZmHOX2a(1)    <---------HSFB2a(1)     <-----------GT1                                     <----------DOF2 <------ZmHOX2a(1)  --------->ARR11(3)      <-----------HVH21               --------->ARR14(2)     -- ----->HVH21        --------->AHL20(1)    ------>ZmHOX2a(2)            <-----------HVH21  --------->YAB1 -----HVH21         <---------AHL20(1)   <---------At4g35610    ----------->HVH21      <----------DOF2 ->ANAC46           <---------ARR11(3)  <---------AGP1     <---------ZAT18  <---------ARR14(2)    <--   acaggaagtttccctaatagaaaatatttttaacacaatgttgatctgtcatatggagtagtagacttgacaatgtcaaatccttttttctttgataaca  242500                             --------->MYB52(1)                        <---------CCA1(2)                      --------->AHL20(2)                      <---------AHL20(2)                      --------->YAB1                     <---------YAB1                   <---------ICU4                  <---------YAB1                     <---------YAB1 ------->YAB1     --------->ICU4                   <-----------GT1           <---------REM1(1) -----TEIL      --------->YAB1          ---------->DOF2           <---------YAB1                   <-   ttcatcttcgaattctaaacataattatatctaacgagtagacaaagactaaataaccattgtttaccctgatagtaagttgtagcatcatatatagcat  242600                                         <-----------GT1                ------>ZmHOX2a(2)                                   --------->CCA1(2)              <---------ANAC58                                ----------->ARR10                 <---------ANAC55(2)                             --------->TOE1(2)                    <---------ANAC58  --------->ARR11(3)        --------->TOE2(3)    --------->TOE2(3)                    --------->ANAC55(2)<------ZmHOX2a(2) --------TOE2(3)             --------->TOE1(3)                  <-----------GT1     <---------ARR11(3)   aaatgttatttcttaatgcaactccatcaaaccttagatatgtttacaatacgaagtagttcaaagttacttgatcgatgagagtagatcatacatttca  242700  Previous    Next  AGI:  At5g01640.1    Description:  prenylated rab acceptor (PRA1) family protein. similar to prenylated rab acceptor (PRA1) family protein [Arabidopsis thaliana] (TAIR:AT2G38360.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48788.1); contains InterPro domain Prenylated rab acceptor PRA1 (InterPro:IPR004895) Range:  from: 241380    to: 242222    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g01650.1    Description:  macrophage migration inhibitory factor family protein / MIF family protein. similar to macrophage migration inhibitory factor family protein / MIF family protein [Arabidopsis thaliana] (TAIR:AT5G57170.1); similar to unknown [Populus trichocarpa] (GB:ABK94097.1); contains InterPro domain Tautomerase (InterPro:IPR014347); contains InterPro domain Macrophage migration inhibitory factor (InterPro:IPR001398) Range:  from: 242547    to: 244108    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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