Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                         <-----------GT1                                                    ----------->GT1                           <---------LBD16          --------->ANAC55(2)                      <---------GLK1(2)             <---------ANAC55(2)                      --------->ARR11(3)      ------>MYB46(1)                      <---------ARR11(3)      ------>MYB83                --------->YAB1               ----------->RAV1(1) -->ZAT14   --------->KAN4(1)              --------->MYB46(3)        <---------ARR14(2)          ---- ->ALFIN1   <---------HSFB2a(1)          <-----------GT1      ---------->DOF2             <---------WRKY38(1) --REM1(1) <---------KAN4(2)  <------ZmHOX2a(1) --------->TOE2(3)    --------->ARR14(2)  --------->WRKY18(1)   gccaagaacatggaacattcaaaagattttcaggaacacatattcaccaacattaagtaacaattcaagcgaattcagaaacaaatgactagtcaaggga  240500                            --------->ANAC58                            --------->ANAC58                     <---------------AGL15                     --------->TOE2(3)                     --------------->AGL15                <----------DOF2                    ----------------->AGL1               <---------ANAC58                   --------->MYB52(1)                    <---------ANAC58                          <-                  --------->RVE1(1)      <---------At4g35610                                       --           <---------ANAC55(2) ----------->RAV1(1) <---------ARR14(2)                            <---       <-----------HVH21    --------->ANAC46       --------->ARR14(2)       <----------DOF2     ----- ----->GLK1(1)--------->AHL20(2)         --------->At4g35610    --------->WOX13(1)    --------->ZAT14   attcaatactgtcacataaaatacctgaataagcaacattctctgctaaaatggatttggctttagcaatcgaagactctttaagaactacagacttccc  240600                                    <-----------ARR10                                   <---------GLK1(2)                                           ======                                <------NtERF2                                      -------->HAHB4                            --------->ANAC58                                       <---------ICU4        ------>ZmHOX2a(1)   --------->ANAC58         --------->HSFC1(2)            <--------ATHB1 <---------ZAT18           --------->LBD16           <---------HSFC1(2)           <---------ATHB51 --------ZAT2             <-----------RAV1(2)   <---------HSFB2a(2)               <---------YAB1 ------->ZAT2       <---------GLK1(1)--------->HSFC1(2)                         --------->YAB1 <----- ------ALFIN1       <----------TaMYB80          --------->HSFB2a(2)            --------->AHL20(2) ---->LBD16         --------->GLK1(1)--------->HSFB2a(1)         --------->TOE2(3)--------->ICU4    <   cagcccagtcctgaacattgggatttccccaggcatcgattcttcccgttctataagcttcgagcatccttgaagcatcaaataataattcaatctcctt  240700      ----------->HVH21    --------->TGA1a    --------->O2    <---------TGA1a                   --------->ARR14(1)    <---------ANAC55(2)               --------->CCA1(2)                      <------MYB46(1)    --------->ANAC55(2)              <---------ARR14(2)                      <------MYB83    ===============================bZIP_DOF                             --------->AtLEC2    --------->At4g35610              --------->TOE1(2)            ------>ZmHOX2a(2)    <---------At4g35610              --------->ARR14(2)           =========================HOX2a_HOX2a    ===============================bZIP_DOF                      ==========================HOX2a_HOX2a    <---------O2                     --------->ARR11(1)          <------ZmHOX2a(2)    --------->ZAT2 =============bZIP_DOF       ---------->DOF2                    --------->ARR14(2)    <---------At4g35610 -----DOF2              ---------->DOF2<-------TEIL             <---------ARR14(2)    --------->At4g35610 -----------HVH21--------->ARR14(2)----------->ARR10           <---------GLK1(1)    <------ZmHOX2a(1)   tgagtcacatgacaaacacgattcgacaaagaaaaggaagatacgaagaatcaccttggagcaagagatcggccatggaaggtagaggagctgtcgattc  240800                  --------->GLK1(2)                  <---------ARR14(2)              <------NtERF2            <---------ANAC46            <---------ANAC58            <---------ANAC58           <------NtERF2          <------MYB83                                                  <xxxxxxxxxxxxxxxxsmallRNA(s)<          <------MYB46(1)                                               <---------At4g35610        <-         <---------DEAR3(1)                   <------NtERF2         --------->DEAR3(1)             --        <--------P--------->ARR14(2)         <---------ATERF1(1) --------->AtMYB61              -----       <---------ANAC58                   ------>NtERF2         --------->MYB46(3)     --------->AHL20(2)       <-------GAMYB                     --------->LBD16   --------->LBD16       ----------->GT1-----       <---------ANAC58                <---------LBD16   <---------LBD16--------->At4g35610     -----      --------->ATHB12               --------->ARR14(2) --------->MYB52(1)      ----------->GT1 <----      --------->MYB55(2)             <---------ARR14(2)<---------ALFIN1--------->DEAR3(1)       <----      <---------MYB46(3)             --------->GLK1(2)--------->MYB46(3)------>NtERF2  <---------AHL20(2)   gagcgccttggttggcgtagaatccgagacggactgaagaatccggccagcgacttcccaccggaaaccatcgccgctggaatcggaaaataaatgccac  240900                                                                                                -----                                                                                               ------                                                                                               ------                                                                                             <-------      <---------AHL20(2)                                                                   -------->P ---------DDF1                                                                             ------>MYB83 --------ETT(2)                                  <---------YAB1                            ------>MYB46(1) ------->ETT(2)                             <---------MYB52(1)                          <---------ANAC58 ---->bZIP60(2)                     --------->ARR14(2)      <------NtERF2               <---------ANAC58 ---->O2             --------->GLK1(1)   ---------->ID1    --------->LBD16          <------------CBF ---->TGA1a          <---------GLK1(1)<-------TEIL       <---------LBD16           <---------ICU4 -----O2        >>>>>>>ZML2         <---------GLK1(2)   --------->At4g35610        <---------GLK1(2) -----TGA1a  --------->AGP1         <---------ARR14(2)  <---------At4g35610     --------->YAB1 ------   gtcgacatttattcagttctagggtttccaagttttccgattcgtcgttatatgattcagccggagaactaaacctcgcgattcagaattgcctaccacg  241000                               <---------YAB1                     --------->LBD16                   <---------ZAT14                   <---------LBD16                   <---------ZAT18                   --------->ZAT18  <------------CBF        <------ZmHOX2a(1)--------->ICU4        <---------AHL20(2) ->NtERF2         --------->ALFIN1<---------AHL20(2)                                              --- --->ANAC46     <---------ANAC58  <---------YAB1  <----------DOF2  --------->YAB1          ---------- --->ANAC58     <---------ANAC58 <---------AHL20(2)    --------->LBD16                ----------->GT1 --ALFIN1     <------NtERF2  <---------AHL20(2)<-----------GT1     <---------ICU4    --------->DAG2 --->ANAC58--------->ALFIN1 <---------YAB1<---------AHL20(2)     <---------ARR11(3) ---------->DOF2   ccaagagggaggagtcgggagtgcggaatttttatttttattgttttattttctttccccaaaccaaaatcatcaccaaaaatccaaaaagttaaaagtt  241100                                        <---------YAB1                                      <---------ICU4                                      --------->YAB1                                     --------->ICU4                                 <---------RAP2.6(3)                                 <------NtERF2  ------->MYC3           ---------->DOF2      --------->RAP2.6(2)                      <------MYB46(1)         <------NtERF2   --------->CCA1(2)      <-------MYC3             <------MYB83        --------->LBD16 --------->ARR14(2)     <---------ANAC58       <---------ANAC58       <---------ANAC46 --------->ARR11(3)     <---------ANAC58       <---------ANAC58    <---------ANAC58  ---------->DOF2       --------->ARR11(1)     <---------ANAC46 <----------DOF2           <---------ANAC58 -------->HVH21     ---------->DOF2  <---------ATHB51        <-----------GT1    <---------LBD16 >DOF2<---------LBD16   <---------ARR14(2)     <---------O2<---------AHL20(2)  <-----------GT1   ----   ctgacaaaggcgggaaagttgaaaaagatttgggccgaaattatgagacgcgtggttttattttaactttgggcttggtttttacggacatagcgttcca  241200                                                                                     <---------O2                                                                                     <---------ANAC46                                                                                     <---------ANAC55(2)                                                                                     <---------ANAC55(1)                                                                                     <---------ANAC58                                                                                     <---------ANAC58                                                                                     <---------bZIP60(2)                                                                                 <---------ANAC58                                             --------->ANAC58                    <---------ANAC58                                         ------->GAMYB                        <---------WOX13(1)                                        --------->ANAC58                    <------------ATHB5                                        --------->ANAC46                    --------->ATHB12                                        --------->ANAC58                    --------->YAB1                                       --------->RAP2.6(3)                  --------->ATHB51                                    <---------MYB46(2)                      <--------ATHB1                                --------->At5g28300                         <---------ICU4                               ----------->GT1                              -------->ATHB1                              <---------ANAC46                             --------->ICU4                      <----------DOF2 --------->MYB52(1) --------->ANAC46  <---------YAB1                 --------->bZIP60(2)<---------MYB52(2)   --------->ANAC58  <---------ATHB12                 --------->ANAC58   <---------MYB111(1)  --------->ANAC58  <---------ATHB51        --------->ARR11(3)   <---------LBD16 --------->ANAC58          <---------ATHB12 ----->ANAC46    --------->ANAC58   --------->MYB46(3)-------->P      --------->ANAC46         ------   agacaagtgtgatattgccacggccttttattgcggtaactaacggcacgaatgctaacccgaaatcgttccaaacaataattgcttacgtggacatttt  241300                        <---------WOX13(1)                    --------->YAB1                   <------MYB46(1)                          <---------ANAC55(2)                   <------MYB83          <-----------GT1    --------->ANAC55(2)                 <---------WOX13(1)   <---------ICU4     --------->WRKY18(1)                        <               --------->ATHB12    --------->YAB1----------->RAV1(1)                 --------->MYB46(3) --->AHL20(2) <---------YAB1      <---------ATHB12      <-----------HVH21  <-----------GT1  <--------   aaaacatctgttcaatgtgattggtgactgacttcaatgaaaattacattgcaacaatggtcaagtatcacagaaaattacattgcaacaatctccacct  241400  Previous    Next  AGI:  At5g01630.1    Description:  BRCA2B (breast cancer 2 like 2B); protein binding / single-stranded DNA binding. similar to BRCA2(IV)/BRCA2A/EDA20/MEE43 (BREAST CANCER 2 LIKE 2A), protein binding / single-stranded DNA binding [Arabidopsis thaliana] (TAIR:AT4G00020.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48781.1); contains InterPro domain DNA recombination repair protein, BRCA2; (InterPro:IPR011370); contains InterPro domain Breast cancer type 2 susceptibility protein (InterPro:IPR015525); contains InterPro domain BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187); contains InterPro domain BRCA2 repeat (InterPro:IPR002093); contains Range:  from: 234848    to: 240908    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g01640.1    Description:  prenylated rab acceptor (PRA1) family protein. similar to prenylated rab acceptor (PRA1) family protein [Arabidopsis thaliana] (TAIR:AT2G38360.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48788.1); contains InterPro domain Prenylated rab acceptor PRA1 (InterPro:IPR004895) Range:  from: 241380    to: 242222    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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