Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                ---------->DOF2                 ----------->HVH21                          ----------->HVH21                 <---------MYB52(1)                        <------NtERF2               <---------TGA1a                             --------->At5g28300            --------->ARR14(2)                            <---------MYB46(3)            <---------ARR14(2)                           <---------DEAR3(1)        --------->At4g35610                              <---------ANAC46     ====================bZIP_DOF                       <------NtERF2     ---------->DOF2     --------->ALFIN1               <---------ABI4(1) ------->MYB52(1)--------->ALFIN1                      <---------RAP2.3(1)              --------->ATHB12 -------->HVH21<---------O2                           <---------RRTF1(3)           ------>NtERF2 ------>DEAR3(1)<-----------HVH21   <------ZmHOX2a(1) <---------RAP2.6(2)  <---------ANAC58 ----->DEAR3(2)<---------ANAC58<---------ANAC46       <---------RAP2.3(2)  <---------ANAC58 ----->MYB46(3)<---------ANAC46<---------ANAC58       <---------DEAR3(1)  <---------ZAT18 ----ARR14(2)  <---------ANAC58<---------ANAC58      --------->At4g35610  --------->ZAT18   ccgacggagaagcagagccgtgagggagtagtggcttaggagacagagcgggattagcggcggtgaaagacgagagtgcgtttgaggccatcgttggaaa  229600                       <------NtERF2                       ----------->RAV1(2)                      ------>NtERF2                     --------->DEAR3(1)                     --------->RAP2.3(2)                     --------->RAP2.3(3)                    --------->ERF1                    --------->RAP2.3(1)                    --------->ORA47(2)                    --------->ATERF1(1)                                                            <-                   --------->At4g35610                --------->YAB1                               <-                   <---------At4g35610               <---------YAB1                                <-             <---------ZAT6                        --------->YAB1        <------ZmHOX2a(1)      -----         --------->ARR14(2)                       --------->ICU4      <------ZmHOX2a(1)       =======         <---------ARR14(2)               --------->CCA1(2) ---------->DOF2  ----------->GT1  -------        <------ZmHOX2a(1)  ----------->ARR10      <---------YAB1  <------ZmHOX2a(1)<---------------AGL15   atgtagaagaggatagtgttgagccgcctgagatttgttgtaagagatggtgatgatgataagaaagaggaaggaggaagggtttatataagagggaaaa  229700                                     <---------MYB46(3)                                 <---------MYB46(3)                                 --------->MYB55(2)                             --------->ALFIN1                            <-------MYC2                            ------->MYC3                                   ------->PIF5                            <-------MYC3                                   <-------PIF5                            ------->MYC2                              --------->ATERF1(1)                            <-------MYC4                             ------>NtERF2                            <-------PIF5                             <---------ATERF1(1)                            ------->MYC4                             <---------RAP2.3(1)                            ------->PIF5                            <---------ANAC58                           <---------O2<---------ARR14(2)           <---------RAP2.3(2)                           --------->TGA1a                          <---------ANAC46                           --------->PIF3(3)                        <---------RAP2.6(2)                           --------->O2--------->ARR14(2)           --------->ATERF1(2)                           <---------TGA1a                          <---------RAP2.3(3)                       <------ZmHOX2a(2)                            <---------ANAC58            <---------MYB52(1)  <---------ANAC46                    <---------ATERF1(2)        <---------At5g28300<---------PIF3(3)                       --------->ATERF1(1)       <---------WRKY38(1) ============================bZIP_DOF    --------->RAP2.6(3)     <-----------HVH21 --------->CCA1(2)               --------->ALFIN1  <------NtERF2   <---------AtMYB61  --------->ARR11(3)           --------->At4g35610------>NtERF2 --------->ALFIN1     --------->AGP1--------->ALFIN1 <---------REM1(1)<------NtERF2 --------ANAC58       <---------ARR11(3)         <-----------RAV1(2)<---------DEAR3(1) --------ANAC58       <---------ARR14(2)      --------->ANAC58   --------->ALFIN1 --------ANAC46       --------->ARR14(2)--------->CCA1(2)    <---------ANAC46 ---->DAG2 <-------GAMYB <---------ALFIN1 <---------YAB1     <---------ANAC58                   <---- ====================================bZIP_DOF --------->ANAC58 --------->ALFIN1                 <---- --->DOF2  ==========================MYC_MYB---------->DOF2  <---------ANAC58    --------->REM1(1)   ggcgtgtggtcaccgttggattgagatccacgtggagggtggatatgaaagccagatgtaggggcgtgtggcggcctcgtgctacatccaatgggatagt  229800                       --------->DOF5.7(2)                      --------->TOE1(3)                      --------->TOE2(3)                     --------->ANAC46                     --------->ANAC58                     --------->ANAC58                   <---------ALFIN1           --------->KAN4(2)          <---------GLK1(1)          --------->GLK1(1)                                                                        <-          <---------KAN4(1)                                                                    <-----          <----------TaMYB80                                                              <----------         <---------ARR14(2)                                                              <-----------         --------->ARR14(2)                                                              ============         --------->ARR11(3)                                                              ------------         <---------KAN4(2)                                                      --------->GLK1(2)  --         ---------->TaMYB80             ---------->DOF2                         <---------ARR11(3)<--         <---------ARR11(3) <---------ARR11(3)                             ------>ZmHOX2a(1) <-------        <------ZmHOX2a(1)<---------DOF5.7(2)                              --------->TOE2(3)  --------        ================HOX2a_HOX2a--------------->AGL15               <-----------GT1   ------------ ------->TEIL    <------ZmHOX2a(2)=================================================================== -----ZAT6--------->KAN4(1) --------->ARR11(3)                     <----------DOF2     <-----------GT1 -----ANAC46    --------->ARR14(2)----------------->AGL3     <----------DOF2   <---------GLK1(2) ----   gtgaacgtgaggatattcgatccacgttaacatctctccaaataaagtttgtctgtttctctgctttctcttttatcctcagaatctttttaccatttcc  229900   ------>ZmHOX2a(1) --------ARR14(2) ----LBD16 -----AGL15 ------AGL1 =============================================================MADS_MADS ----->AGL1 ------->ARR14(2) -------MYB52(1) --ARR14(2)                     ------>ZmHOX2a(1)                               --------->YAB1 ->ARR14(2)                  <-----------GT1                 ------->TEIL    <---------At4g35610 ----->AG                   <-----------GT1   <---------------AGL15      <---------REM1(1) =====MADS_MADS     <----------DOF2           ======================================================= ----->LBD16        <---------DAG2            ------>ZmHOX2a(1) <---------AHL20(2)         <---------YAB1   ggttcctactctcgcgttgccactttcttatttcctactcgctctctcctatttttcgaaatgtattttttagagttgtagatgataacaaatacaattg  230000                                                                 ----------->HVH21                                                              --------->TOE1(2)                                                   --------->O2 <-----------HVH21                                                   <---------ANAC58                      --------->ICU4               <---------ANAC46                               ---               ---------->DOF2    <---------ARR14(2)          --------->TOE2(2)                ------     --------->YAB1 ---------->DOF2   ----------->RAV1(1)  --------->ARR11(3)        --------->GLK1(1)  --------------->AGL15        <---------ANAC58    <---------O2------>ZmHOX2a(1)     <---------GLK1(1)  <---------------AGL15  <---------YAB1            <---------ANAC58                <------ZmHOX2a(1)- =================MADS_MADS    <---------ANAC58 *TSS ----------->GT1     <------------CBF      <-----   tttactataaaaaaaaaaaaagaaaagatgatagcgtttccaacataagttagacgtgtaaaatcctgtgacacatattgacataggaaatcggatagag  230100                                                                                               ------                                                                                      --------->LBD16                                                                                     <---------ANAC58                                                --------->TOE1(2)                    <---------ANAC58                                          <---------HSFB2a(2)                        <---------ANAC55(2)       <-----------GT1                    --------->HSFB2a(2)                        <---------ANAC46 ------>CCA1(2)                     --------->ANAC46                                 --------->ANAC55(2) ----->GT1          <---------YAB1  --------->ANAC58                                 <---------ANAC55(1) --------->DOF2    <-----------TBP  --------->ANAC58                     <----------DOF2    <-------- ----ZAT6    <------------CBF  --------->YAB1<<<<<<<ZML2 <---------TOE2(3)       <----------DOF2  <--   ataaaagtatttccatattgtttttataaaaaatcatcaagctactagaacataagattgagaatggtccaaaccctttaagactttccgtattatgtgg  230200                                                 <---------GLK1(1)                                                 <---------CCA1(1)         <---------ICU4                          <---------RVE1(1)      --------->YAB1              <---------ANAC58            --------->ANAC58     <-------TEIL        ----------->GT1        --------->ARR11(3)                        <------ZmHOX2a(1) --->ZAT18               <----------ID1         <---------ARR11(3)                    --------->TOE1(2) ---RAV1(1)        ---------->DOF2<---------ANAC58            --------->ANAC58   --------->AHL20(2) -------MYB59<-----------GT1     <-------TEIL  <------ZmHOX2a(1)                 --------->YAB1     <   cctaatattcataatttacaacaaagaaggaaaaattcgtggctctctaggatatttgatggagacggaaaactgatatacaattatacataggatagag  230300                                --------->DAG2                       <-----------GT1                 --------->bZIP60(2)                                                         <-------                 --------->ANAC46                                                        <------NtERF2                 --------->ANAC58                                <----------DOF2       <---------DEAR3(1)                 --------->ANAC58      ----------->HVH21       ---------->ID1       <---------TGA1a                 --------->ANAC55(1)  <-----------HVH21    <---------ANAC46         --------->TGA1a                 <---------ANAC55(2) <---------ANAC58      <---------ANAC58         --------->ANAC46               <---------ALFIN1---------->DOF2<---------ARR14(2) =============================bZIP_DOF            --------->ANAC46<---------At4g35610            --------------------->WRI1<-----------HVH21      --------->At4g35610   --------->At4g35610            <---------ANAC58         <---------O2 ---------ANAC46 --------->ANAC55(2) <---------ANAC58     --------->MYB52(2)        --------->O2 <---   tcgcgagtagctcaactccacgtaatttccagctaaagcgcgtgagaggttccaaatggttccttgtctttatcggagacaattacacgtcggagtaagt  230400                        --------->ANAC58                        --------->ANAC58                       <---------At5g28300                   --------->bZIP60(1)                                   <-----------RAV1(1)              --------->YAB1                                             --------->ICU4      <---------PCF2<-----------HVH21                           --------->DAG2     ----------->TCP11(1)--------->DEAR3(1)                    ---------->DOF2     <------ZmHOX2a(1) --------AtSPL8    <---------bZIP60(1)                      --------->HSFB2a(2)  --------->ANAC58   < ----TEIL<------NtERF2<-----------GT1     --------->YAB1    <---------HSFB2a(2)  --------->ANAC58  --   acattgtgggcctcattagtaatgtcacggcccaagttaaaaaatcatatcaaatggtttttctaaaaagttgtaatgttggcaaggacaaaaattaagc  230500  Previous    Next  AGI:  At5g01595.1    Description:  other RNA Range:  from: 227021    to: 230010    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g01600.1    Description:  ATFER1 (FERRETIN 1); ferric iron binding. Identical to Ferritin-1, chloroplast precursor (FER1) [Arabidopsis Thaliana] (GB:Q39101;GB:Q8LG19); similar to ATFER4 (FERRITIN 4), ferric iron binding [Arabidopsis thaliana] (TAIR:AT2G40300.1); similar to Ferritin-1, chloroplast precursor (GB:Q96540); contains InterPro domain Ferritin, conserved site (InterPro:IPR014034); contains InterPro domain Ferritin-like (InterPro:IPR009040); contains InterPro domain Ferritin, N-terminal; (InterPro:IPR001519); contains InterPro domain Ferritin-related (InterPro:IPR012347); contains InterPro domain Ferritin and Dps; (InterPro:IPR008331); contains InterPro domai Range:  from: 227950    to: 230048    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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