Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        >>>>>>>>>TBF1 ------NtERF2                                                                                -------- ------->LBD16                <---------MYB52(1)                                     ----------->GT1 -------ANAC46               --------->LBD16                                        <---------TOE2(3) ------LBD16               <---------LBD16                                         --------->DAG2 -----RAV1(2)            --------->ARR14(2)                  <------ZmHOX2a(1)    ---------->DOF2  -- ->HVH21                 <---------ARR14(2)       --------->GLK1(2)              --------->CCA1(2) -- -HVH21  >>>>>>>>>TBF1   --------->GLK1(2)        <---------ARR14(2) --------->ARR11(3)      --------   gcggagaagaagaagaagatgggagagaatccggtagagacatgttgtcgcgaatcgatgagaggaatgaagaaattgaagagataaaggtaaaacccta  186300                                                       <---------At4g35610                                                       <------NtERF2                        >>>>>>>>>GATA-2                                                      <---------DEAR3(2)                    >>>>>>>>>GATA-4                                                     <---------RAP2.6(2)                  <---------MYB46(3)                                                    --------->RAP2.6(3)           --------->WRKY12               <---------TOE1(3)     --------->ATHB12<---------DEAR3(1)        --------->O2 <--------  <---------TOE2(2)           --------->TOE1(2)    <---------ARR14(2)          <---------ANAC46  ---- ->TOE1(3)     <---------TOE2(3)  <------ZmHOX2a(1)--------->ARR14(2)          <---------O2 >>>>>>>>>GATA-1 ------->TOE1(3)          <------ZmHOX2a(1)      <---------MYB46(3)        <-----------HVH21--------- ------->TOE2(3)<-----------RAV1(1) <---------YAB1 <-----------HVH21       <-----------TGA1 >>>>>>>>>GATA-3 ->TOE2(3) <-------GAMYB<---------TOE2(3)    ----------->HVH21   <----------DOF2  --------->WRKY38(1)   accttaggtttggggttaatgttgttgaggaacgaaggatgatttgaacgacgggtcggcttcttctctttcttcatcgtcacgttgaacggtggattca  186400                                                    --------->TOE2(3)                                                 <---------CCA1(2)                              ----------->GT1  *TSS --------->YAB1                             <-----                            ---------->DOF2  <---------AHL20(2)    <---------TOE2(3)           <----- -ARR14(2)           <----------DOF2     <---------AHL20(2)       ---------->DOF2           <-------- ----->ANAC46     ------>NtERF2          --------->AHL20(2)      --------->AHL20(2)       --------->GLK1(2) >ARR14(2)  --------->CCA1(2)--------->DAG2  <-----------GT1     <---------AHL20(2)      <---------GLK1(2)   caaaacttggagagagacgacgactttggaaaaagtaaaacatttattttcttatcttaatagaaatttaaagataaaaaacattttcgaagaatctctt  186500                                                                                         ----------->GT1                                                     ------->GAMYB                   --------->KAN4(1)                                               <---------ZAT6                        <----------TaMYB80                                             <---------At5g28300                    ---------->TaMYB80                                           --------->ICU4                           --------->ARR14(2)                                       ------------>CBF                             <---------KAN4(2)                                      --------->ANAC46                            --------->At5g28300                                      --------->ANAC55(2)                        ----------->GT1                         ----------------------->TaNAC69(2)                 --------->At4g35610                     <------MYB83     --------->ANAC58                      --------->ZAT2 -----DOF2   <------ZmHOX2a(1)        <---------ANAC55(2)                   <---------At4g35610<----- ----DAG2  --------->MYB59            --------->ANAC58                   <---------At4g35610  ------- ---------AGL3       <------MYB46(1)<-----------GT1 <---------ALFIN1 <-----------HVH21--------->KAN4(2)   tttggtttggagttaggacaggctggtctggtctcgttttacgcaattactgtaacaccctcattcccatctgtcatcagctacggtatattcgtaaata  186600                           --------->MYB52(1)                     --------->LBD16                                                         --------                    ----------->GT1                                                          *TSS                    --------->TOE2(3)                                                        --------                    --------->ANAC46                                                        ---------                 --------->ARR14(2)                                                         ---------                 <---------ARR14(2)                                                         ---------               <----------DOF2                      --------->ANAC58                        ---------               ---------->TaMYB80                   --------->ANAC46                        <--------    <---------AHL20(2)   <---------MYB52(2)         --------->ANAC58                       <---------LBD16 ----ICU4     <---------ANAC58        <-----------HVH21                                   --------->MYB52(1) -->ICU4      <---------ANAC58------->GAMYB   ----------->RAV1(2)                        <---------SPL7   tgacatttaagtgagggcttatccgtaaataaccgaagcgagtcacatacctggacgcagtcttcgtttctcattccagtctggttttcgacatacggaa  186700                     --------->AHL20(2)                    <---------AHL20(2)                    --------->AHL20(2)                                                              <          --------->CCA1(2)                                                                        --          <------ZmHOX2a(2)                                                                        --         --------->AGP1                                                                            <-         --------->ARR14(2)                                                                        <- ->LBD16 --------->ARR11(3)                                       --------->TOE2(3)       <---------TOE1(3) --->GT1 <---------ARR11(3)                                       --------->TOE1(3)       <---------TOE2(3) >ANAC58 <---------AGP1 <---------AHL20(2)                  --------->ANAC46          --------->ZAT2< >ANAC58 <---------ARR14(2)                                 --------->ANAC58          <---------ZAT2- >ANAC55(1)       --------->YAB1                            --------->ANAC58          --------->At4g35610 >ANAC46<---------CCA1(2)                             <---------HSFC1(2)              <---------At4g35610 -ANAC55(2)------>ZmHOX2a(2)  --------->LBD16         --------->HSFC1(2)    <-----------GT1  --------   aaaaaaaaccagatctacaaaaataaataatccccaaattgaatttcaaatttcgaagcttcaagaaaccctaatttttctcaatctaagctgaggtttg  186800              --------->ANAC46              --------->ANAC58              --------->ANAC58           <---------ZAT18   --------->TOE1(1)                                    --------->YAB1                           ----   --------->TOE2(1)                                    ------>ZmHOX2a(2)                  ------->TEIL ------>ZmHOX2a(2)                                     <------ZmHOX2a(2)                   -------->P ---------GLK1(1)                                   <---------ANAC58                      <---------- ------->ARR11(3)                                   <---------ANAC58                   --------->ARR14(2) ------->ARR14(2)                              <---------MYB46(3)              <---------At4g35610 --------ARR14(2)                              <-----------RAV1(1)   --------------------->WRI1 <---- --------ARR11(3)                             <---------WOX13(1)  <-----------TGA1     <---------ARR11(3) ------ZmHOX2a(2)                             <---------YAB1     <---------ANAC58      <---------ARR14(2) -------->GLK1(1)                           --------->ATHB12     <---------ANAC58      <-----------ARR10 ->ALFIN1  --------->ZAT14--------->GLK1(1)<---------YAB1  <---------TOE1(2)   --------->At4g35610 <-   ggatctcgtacattgcacgcgatgggagatttcaatctcgctctcgtgattgttgcgatcgtagtttgcgtcattgttttcatctccagtatctacctcc  186900                                                                                                    -                                                                                                   --          --------->At4g35610                                                                    ---- <---------WRKY12                               <-------TEIL                                     <--- -->ZmHOX2a(1) --------->HSFB2a(2)            --------->ARR14(2)                <---------ARR11(3)--- -GT1   --------->YAB1     XXXXXXXXXXXXXXXXXXXX>MIR166A-G                       --------->ARR11(3)<-- -----ALFIN1   <---------HSFB2a(2)            <---------ARR14(2)               --------->YAB1   <---- ----------HVH21 <---------At4g35610      --------->LBD16          <-----------GT1------>ZmHOX2a(2)<-   tcgtcaactatcagcatccagatgatgcaaaccaggcttatttccccaaattcgttgttgtttttggtttatccattgctatgatctctattctcatgtt  187000               <------------AtMYB77              -------->P      --------->ALFIN1     --------->ARR14(2)     <---------ARR14(2)    <------NtERF2                                                                         <---------ANAC46    <-------GAMYB                                                               <----------DOF2   <---------MYB46(3)                                                          ------>ZmHOX2a(2)  <---------ANAC46          --------->ETT(2)                                  <------ZmHOX2a(2) <---------LBD16            <---------ETT(2)                                 <---------ARR11(3) -------->LBD16--------->DEAR3(2)                                            --------->ARR11(3) ------->ATERF1(2)     <---------ANAC58                                      --------->ARR14(2) ----->MYB52(1)--------->MYB46(3)                                            <-----------ARR10 ------At5g28300------->GAMYB                     <-------GAMYB              <---------ARR14(2) ------>DEAR3(2)--------->ANAC46                  <---------ANAC46  --------->TOE2(2)<---------ANAC58 -------LBD16--------->MYB52(1)                  ------>NtERF2      --------->TOE1(2)<---------ANAC58 -------GT1 ----------->HVH21<---------DDF1   ------->GAMYB <-----------GT1 <------ZmHOX2a(1) --------ATERF1(2)     <---------ANAC58      <---------DEAR3(1)<---------DAG2--------->GLK1(2)   accggcggatgtggctaaccggcatgcttgtcgacattcgatttacaacggcgcttgtaatctcaccttacctatgaaggatctttggcttgccgtttac  187100                ---------->ID1            <---------ANAC58            <---------ANAC58                                   <------ZmHOX2a(1)  ----------->HVH21       <---------ICU4                 ------>NtERF2                <---------AHL20(2)   attgttgacgctgtgcttgtcttcttcatcatccccttcgctatgtttttctatgaaggcgaccaggacaagtttgtttctccacgattttttttttttt  187200  Previous    Next  AGI:  At5g01450.1    Description:  protein binding / zinc ion binding. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G38185.1); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G38185.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO50146.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 183327    to: 186447    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g01460.1    Description:  LMBR1 integral membrane family protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G08930.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15819.1); similar to Os06g0128200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056670.1); contains InterPro domain LMBR1-like conserved region (InterPro:IPR006876) Range:  from: 186693    to: 190456    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version