Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                               --------->ANAC58                                                    <---                         ------>NtERF2                    --------->YAB1                       ------                        <----------ID1              ----------->RAV1(1) ----------->GT1        ------                      ------->GAMYB                <----------ID1      <---------WOX13(1)  ----------                     --------->MYB46(3)   --------->MYB46(3) ---------->DOF2            -------->P ->DOF2    <---------AHL20(2)--------->ANAC58    ------------------------>ANAC81    ------->TEIL-----   catcgacactgatttaaaattcaacgacgacaagacatatatcaacaacaagaacaacaaaaataaagcatagattgaaaaatacgaacttaccaaagat  186000                                                                      <-------TEIL                     ------->GAMYB                                 <---------At4g35610                    --------->ANAC58                               --------->At4g35610            ------->GAMYB                                  <---------ANAC58 ----TEIL  --------->DEAR3(1)    <---------ARR11(3)        <---------ANAC58                    ------ --->ARR11(1)       --------->ANAC58                    ------>ZmHOX2a(1)                     ------- --->ARR11(3)       --------->ANAC46                    ----------->TGA1                      <------ >DOF2     --------->MYB46(3)    --------->ARR11(3)     ----------->HVH21          <---------AtLEC2 ---->CCA1(2)  ------>NtERF2 --------->MYB52(1)       ----------->RAV1(2) --------->MYB46(3)---------   acagaaggtagcaacgacgacaacgcaagaccaagggtcttcagaagtggaattgttcctgacgttctcagatgcaacaacgcttccatggcgataatcg  186100                                                                                                    <                                                     <---------RAP2.6(3)                           --                                                    <---------ANAC58                              <--                         --------->YAB1    <---------ARR14(2)                                 <------                        <------ZmHOX2a(2)  --------->ARR14(2)                              ----------              --------->ANAC46 --------->YAB1       <---------ANAC46                      <---------- --->YAB1     <---------DEAR3(1)           <---------GLK1(2)                           --------->ANAC55(2) -------->AtSPL3  <---------MYB46(3)     --------->LBD16      ---------->DOF2       <---------REM1(2) ---------AtSPL8 --------->ALFIN1      <---------LBD16<---------MYB52(1)      <---------MYB52(1) <--- >YAB1       <---------LBD16  <---------YAB1        <---------ANAC58   ---------->DOF2<---------LBD16   tactcagaacgattccacggtggacgatcacgatgatcaaaaccggaatcgttgccgtgatgttcaaagcgatgaaagccggtttcttcacgggtcacag  186200      >>>>>>>>>TBF1 xxxxxxxxxxxxxxxx>smallRNA(s) ------NtERF2                                                                                -------- ------->LBD16                <---------MYB52(1)                                     ----------->GT1 -------ANAC46               --------->LBD16                                        <---------TOE2(3) -----RAV1(2)              <---------LBD16                                         --------->DAG2 ->HVH21                 --------->ARR14(2)                  <------ZmHOX2a(1)    ---------->DOF2  -- -HVH21  >>>>>>>>>TBF1   --------->GLK1(2)        --------->GLK1(2)              --------->CCA1(2) -- ------LBD16             <---------ARR14(2)       <---------ARR14(2) --------->ARR11(3)      --------   gcggagaagaagaagaagatgggagagaatccggtagagacatgttgtcgcgaatcgatgagaggaatgaagaaattgaagagataaaggtaaaacccta  186300                                                       <---------At4g35610                                                       <------NtERF2                        >>>>>>>>>GATA-1                                                      <---------DEAR3(2)                    >>>>>>>>>GATA-4                                                     <---------DEAR3(1)                   <---------MYB46(3)                                                    --------->RAP2.6(3)           --------->WRKY38(1)               <---------TOE1(3)     --------->ATHB12<---------RAP2.6(2)       --------->O2 >>>>>>>>>GATA-3  <---------TOE2(2)           --------->TOE1(2)    --------->ARR14(2)          <---------O2 >>>>>>>>>GATA-2 ->TOE2(3)     <---------TOE2(3)  <------ZmHOX2a(1)<-----------HVH21           <---------ANAC46  ---- ------->TOE2(3)          <------ZmHOX2a(1)      <---------MYB46(3)        <-----------TGA1 <-------- ------->TOE1(3)<-----------RAV1(1) <---------YAB1 <---------ARR14(2)      <-----------HVH21--------- ->TOE1(3) <-------GAMYB<---------TOE2(3)    ----------->HVH21   <----------DOF2  --------->WRKY12   accttaggtttggggttaatgttgttgaggaacgaaggatgatttgaacgacgggtcggcttcttctctttcttcatcgtcacgttgaacggtggattca  186400                                                    --------->YAB1                                                 <---------CCA1(2)                              ----------->GT1  *TSS --------->TOE2(3)                          <-----                            ---------->DOF2  <-----------GT1       <---------TOE2(3)           <----- ----->ANAC46        <----------DOF2     --------->AHL20(2)       ---------->DOF2           <-------- -ARR14(2)        ------>NtERF2          <---------AHL20(2)      <---------AHL20(2)       --------->GLK1(2) >ARR14(2)  --------->CCA1(2)--------->DAG2  <---------AHL20(2)  --------->AHL20(2)      <---------GLK1(2)   caaaacttggagagagacgacgactttggaaaaagtaaaacatttattttcttatcttaatagaaatttaaagataaaaaacattttcgaagaatctctt  186500                                                                                         ----------->GT1                                                     ------->GAMYB                   --------->KAN4(1)                                               <---------ZAT6                        <----------TaMYB80                                             <---------At5g28300                    ---------->TaMYB80                                           --------->ICU4                           --------->ARR14(2)                                       ------------>CBF                             <---------KAN4(2)                                      --------->ANAC58                            --------->At5g28300                                      --------->ANAC55(2)                        ----------->GT1                         ----------------------->TaNAC69(2)                 --------->At4g35610                     <------MYB46(1)  <---------ANAC55(2)                   <---------At4g35610 -----DOF2   <------ZmHOX2a(1)        --------->ANAC46                      --------->ZAT2     <----- ----DAG2  --------->MYB59            --------->ANAC58                   <---------At4g35610  ------- ---------AGL3       <------MYB83   <-----------GT1 <---------ALFIN1 <-----------HVH21--------->KAN4(2)   tttggtttggagttaggacaggctggtctggtctcgttttacgcaattactgtaacaccctcattcccatctgtcatcagctacggtatattcgtaaata  186600                           --------->MYB52(1)                     --------->LBD16                                                         --------                    --------->TOE2(3)                                                        --------                    --------->ANAC46                                                         *TSS                    ----------->GT1                                                         ---------                 <---------ARR14(2)                                                         <--------                 --------->ARR14(2)                                                         ---------               ---------->TaMYB80                   --------->ANAC58                        ---------               <----------DOF2                      --------->ANAC58                        ---------    <---------AHL20(2)   <---------MYB52(2)         --------->ANAC46                       <---------LBD16 ----ICU4     <---------ANAC58        <-----------HVH21                                   --------->MYB52(1) -->ICU4      <---------ANAC58------->GAMYB   ----------->RAV1(2)                        <---------SPL7   tgacatttaagtgagggcttatccgtaaataaccgaagcgagtcacatacctggacgcagtcttcgtttctcattccagtctggttttcgacatacggaa  186700                     --------->AHL20(2)                    --------->AHL20(2)                    <---------AHL20(2)                                                              -          <------ZmHOX2a(2)                                                                        <-          --------->CCA1(2)                                                                        --         --------->ARR14(2)                                                                        <-         <---------ARR11(3)                                                                        -- --->GT1 --------->AGP1                                           --------->TOE1(3)       <---------TOE2(3) ->LBD16 --------->ARR11(3)                                       --------->TOE2(3)       <---------TOE1(3) >ANAC55(1)       --------->YAB1                            --------->ANAC46          --------->At4g35610 -ANAC55(2)------>ZmHOX2a(2)                                --------->ANAC58          --------->ZAT2< >ANAC58 <---------AGP1 <---------AHL20(2)                  --------->ANAC58          <---------ZAT2< >ANAC46 <---------ARR14(2)                           <---------HSFC1(2)              <---------At4g35610 >ANAC58<---------CCA1(2)     --------->LBD16         --------->HSFC1(2)    <-----------GT1  --------   aaaaaaaaccagatctacaaaaataaataatccccaaattgaatttcaaatttcgaagcttcaagaaaccctaatttttctcaatctaagctgaggtttg  186800              --------->ANAC58              --------->ANAC46              --------->ANAC58           <---------ZAT18   --------->TOE2(1)                                    ------>ZmHOX2a(2)                        ----   --------->TOE1(1)                                    --------->YAB1                     ------->TEIL ------>ZmHOX2a(2)                                     <------ZmHOX2a(2)                   -------->P -------->GLK1(1)                                   <---------ANAC58                      <---------- --------ARR11(3)                                   <---------ANAC58                   --------->ARR14(2) ------->ARR11(3)                              <---------MYB46(3)              <---------At4g35610 --------ARR14(2)                              <-----------RAV1(1)   --------------------->WRI1 <---- ------->ARR14(2)                             <---------YAB1      <-----------TGA1     <---------ARR14(2) ---------GLK1(1)                             <---------WOX13(1) <---------ANAC58      <---------ARR11(3) ------ZmHOX2a(2)                           --------->ATHB12     <---------ANAC58      <-----------ARR10 ->ALFIN1  --------->ZAT14--------->GLK1(1)<---------YAB1  <---------TOE1(2)   --------->At4g35610 <-   ggatctcgtacattgcacgcgatgggagatttcaatctcgctctcgtgattgttgcgatcgtagtttgcgtcattgttttcatctccagtatctacctcc  186900  Previous    Next  AGI:  At5g01450.1    Description:  protein binding / zinc ion binding. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G38185.1); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G38185.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO50146.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 183327    to: 186447    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g01460.1    Description:  LMBR1 integral membrane family protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G08930.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15819.1); similar to Os06g0128200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056670.1); contains InterPro domain LMBR1-like conserved region (InterPro:IPR006876) Range:  from: 186693    to: 190456    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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