Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      --------->At4g35610                                                                                    <---------At4g35610                                                                                ------>ZmHOX2a(2)                                                                                =====================                                                                               --------->At4g35610                                                                               <------ZmHOX2a(2)                                                                               ======================                                                                              --------->GLK1(2)                                                                              <---------ARR14(2)                                                                              <-----------ARR10                                                                              --------->ARR11(3) <---------MYB46(3)                                                           <---------ARR11(3) --------ANAC58                                                               <---------AGP1 --------ANAC58                                                               --------->ARR14(2)    - ------YAB1     ------>ZmHOX2a(2)                                      <----------DOF2      ------->GAMYB ---ATHB51    --------->ARR11(3)                                      <---------ANAC58     --------->ANAC46 -->ICU4      <---------ARR11(3)                                      <---------ANAC58<----------DOF2   tgcttgttgatgtgatgatcttcatcagcaagagtcaaaacctcgctctcatcgatgtaatcgattccaattgcttcaaggatctgagcttcaacgaaat  173200                                     <----------DOF2                                 <------------MYB.PH3(1)                             ------>NtERF2                                --------->RAP2.6(3)                              --------->ANAC58 <--                         --------->ARR14(2)                                      --------->DEAR3(1)--          --------->TOE2(3)    --------->MYB52(1)               <---------ARR14(2)<---------ATERF1(1)          --------->TOE1(3) --------->YAB1             <--------HAHB4            --------->ANAC58 <--      ------>ZmHOX2a(1)--------->LBD16                 --------->ATHB12         --------->ATERF1(1)<-  ------>MYB46(1)    <---------LBD16<---------ANAC58   <---------ICU4          <---------ATERF1(1)---  ------>MYB83    ----------->HVH21 <---------ANAC46  <---------ATHB12        ----------->HVH21   --- ============HOX2a_HOX2a <---------GLK1(2)       --------->TOE2(3)          --------->ANAC46  <------ ============HOX2a_HOX2a <---------ARR14(2)      <----------DOF2--------->ARR14(2)------>NtERF2 ----- -------->AtMYB61<-----------HVH21  <---------ANAC58--------->YAB1------>ZmHOX2a(2)--------->ATERF1(1)   gaccaatcctagccttagccatcaccggaatcgtaacggcttgtttgatttctttaatcatttgtggatcgctcatacgagcgacgcctccttgagcgcg  173300                                         --------->MYB46(3)                                         <---------ALFIN1                                    --------->ANAC58                                    --------->ANAC58                                 ------>NtERF2                               --------->RAP2.3(1)                               <------NtERF2                              <---------ORA47(2)                             --------->bZIP60(1)                              ------>NtERF2                                  --------->ANAC46                              <---------RAP2.3(1)                            --------->ETT(2)                              <---------RRTF1(1)                             <---------bZIP60(1)                              <---------ERF1                              --------->WRKY38(1)                             <---------RRTF1(3)                           --------->WRKY45             --------->ANAC46--------->bZIP60(1)                        <-------GAMYB             --------->ANAC58<---------RRTF1(2)                        <---------DEAR3(1)        <------ZmHOX2a(1)    <---------bZIP60(2)                       <---------ANAC46    --------->ZAT2           <---------RAP2.3(3)                      <------NtERF2    <---------At4g35610      <---------bZIP60(1)                  <---------ANAC58    --------->At4g35610      <---------DEAR3(1)               <---------ANAC58                      - ---------ARR10             --------->RAP2.6(3)         --------->CCA1(2) ----------->HVH21         - ------->GLK1(1)          ----------->HVH21------>MYB83--------->ARR14(2) --------->WRKY12         <- -------ARR14(2)          ----------->TGA1 ------>MYB46(1)    <---------ANAC58                    <-- --------GLK1(1)     --------->ANAC58   --------->At4g35610  --------->ZAT2<---------DOF5.7(2) ------ ------->TaMYB80     --------->ANAC58--------->MYB46(3)<---------ARR14(2)--------->DOF5.7(2)--------- ------>ARR14(2)   ---------->DOF2<------NtERF2     <------NtERF2<---------ZAT2        --------->YAB1 ---LBD16    --------->ANAC58<---------RAP2.3(2)  <---------DEAR3(1)<---------DEAR3(1)<---------YAB1- ---->LBD16<---------ALFIN1--------->MYB52(1)    ------>ZmHOX2a(1)<---------ANAC58 <-------TEIL<-----   gatatcagcaggaacacgctccaaagccatgacggcgcaagcaccagcctcctcggcgatacgagcttgctcggcgttgacgacatccatgataacacca  173400                                                                                   <---------ALFIN1                                                                                   ---------->DOF2                                                                                  <---------ALFIN1                                                                                <---------ALFIN1                                                                                ----------->RAV1(1)                                                                              ------>NtERF2                                                                              --------->ABI4(1)                                                                             --------->DREB2C(2)                                                                             --------->ANAC46     <--       --------->At4g35610                                               --------->ZAT14         ----       <---------At4g35610   --------->LBD16                             --------->SPL7  <---------DEAR3(2)       ----------->RAV1(2)  --------->ANAC46                           <---------SPL7    <---------MYB46(3)      <-----------ARR10    <---------LBD16                           --------------->AtSPL3--------->ARR14(2) -------->ANAC46        <-----------HVH21                <---------DOF5.7(2) --------->DEAR3(1)  <--- -------->ANAC58     ------>MYB83                      --------->DOF5.7(2)<---------ALFIN1<---------MYB52(1) --------LBD16       ------>MYB46(1)                   <---------MYB52(1)<---------ZAT14 <---------ATERF1(1) -------ALFIN1     --------->DEAR3(1)                 <-------GAMYB <---------DOF5.7(2) <---------DEAR3(1) --->AtMYB61      --------->DEAR3(2)               ------>NtERF2   ------------------>SPL14<---------ARR14(2) >ZAT6--------->GLK1(2)--------->AtMYB61          --------->DEAR3(1)<---------At5g28300<---------LBD16 -------->ANAC58  --------->MYB46(3)     <---------GLK1(1)        --------->DOF5.7(2) ------->GAMYB ----ALFIN1     --------->MYB52(1)       --------->GLK1(1)        <---------MYB52(1) --------->ANAC46   ccacggagcatctgagccaaaccgaccttcacggagaagggagatttcttcgcctccgttatcgcaccgttaccgtacaccgccacaacgccggttcctt  173500                                                                                ------>ZmHOX2a(1)   <                                                                                =====================                            ----------->GT1                                 --------->ARR14(2)  ----- --------->ATHB51          --------->ALFIN1                       <----------DOF2      <<<<<<<<<GATA-1 -------------AGL15      <---------ANAC46                 <---------REM1(1) <---------ARR14(2)------- ------------->AGL1      <---------ANAC58               ----------->GT1    <---------DEAR3(2) <------ --------------AGL2      <---------ANAC58      --------->CCA1(2)  <---------GLK1(1)  <---------CCA1(2)   ccattatcggagattgaagagaaatttgtgtggagaaaatggaagagagatttgggaatggtgaagcgatttctggccggtcctcgtttatctatggatc  173600                                                                                                   <-                                                                                                <----                                                                                               ------                                                                                               ------                               ---------->DOF2                                                 <-----                       <---------ANAC46                                      <---------AHL20(2)------                       --------->ALFIN1      <---------AHL20(1)         --------->AHL20(2)     <-----                       ----------->GT1       --------->AHL20(1)         <---------AHL20(2)     ------                      <------NtERF2          <---------AHL20(2)     <---------AHL20(2)        <------ ----------DOF2     <---------ANAC46         --------->AHL20(2)     <---------YAB1 <---------GLK1(2) ==HOX2a_HOX2a      <---------DREB2C(2)   --------->YAB1           <---------AHL20(2)     ------>ZmHOX2a(1) ->ZmHOX2a(2)       <---------DEAR3(1)  --------->AHL20(2)     --------------->AGL15     --------->TOE2(3) -->ARR14(2)   <-----------RAV1(1)----------->GT1           <-----------GT1 --------->AHL20(2)------- ---ARR14(2) *TSS  <---------ABI4(1)   --------->YAB1     <-----------GT1   <---------AHL20(2)<------   ggctttatagtgagagtttgtggcggtgtgaataaaagctaaaataataaaatagatgtttttctctatttttattaattaaatagaaactccttaatta  173700      <---------AHL20(2)      --------->AHL20(2) --------AHL20(2) --------CBF -->ATHB1                                             <---------YAB1 -->HAHB4                                          --------->WRKY18(1) ----ICU4                                      --------->SPL7                                     <-- --->ATHB51                                  <---------SPL7                                       --- ----AHL20(2)                                ----------->HVH21                                    <-- --->ATHB12          ---------->DOF2        ------>ZmHOX2a(2)                                     --- ---YAB1     <---------AHL20(2)         <---------YAB1--------->ICU4                           <----- -->ICU4    <---------YAB1 --------->ALFIN1<---------At4g35610                           ------->MYC3 ---ATHB51<---------ICU4 --------->ALFIN1  --------->At4g35610                           <-------MYC3   ttgaatttttaatttttatttgggaaagtgtgggattttgttgtgatcggacggtcaagattaaaacacaatttcgatttttcgattaacacatgtttag  173800                                                                <---------ARR14(2)                                                                --------->ARR14(2)           <---------TOE1(3)                                  --------->LBD16                      -- -------ZAT18                                                --------->HSFB2a(2)                  --- ------>ZAT14           <---------MYB52(2)                <---------SPL7        ----------->GT1  <--- -------ZAT14--------->ARR11(3)             --------->ANAC58 <---------HSFB2a(2)<---------ZAT6<------ ------>ZAT18<---------ARR11(3)             ----------->GT1 <---------LBD16 ---------->DOF2  -------- ----ANAC46<---------TOE2(3)                --------->ANAC58--------->SPL7<---------YAB1<-------TEIL   tggactgcattttaagattttagccaactaaactagaggttttgacaagaaaaaatgagtcgtccggaattggattataaaagtgttaaatgcattgtta  173900                                       <---------AHL20(2)                                       --------->AHL20(2)                              <-----------GT1                                        ---------->DOF2                            <---------AHL20(2)                                 ----------->HVH21                        --------->AHL20(2)                                   --------->At4g35610                        <---------AHL20(2)                                   ----------->RAV1(2) ------->YAB1          --------->AHL20(1)            <----------ID1      --------->GLK1(2) ------>ICU4           <---------AHL20(1)            ----------->GT1     --------->ARR11(3) ------TOE2(3)         <---------AHL20(2)     <---------ARR11(3)         <---------ARR11(3) ---YAB1               --------->AHL20(2)     --------->ARR11(3)        --------->CCA1(1)      ------ ->TOE2(3)       <-----------GT1      <---------AHL20(2)                --------->RVE1(1)      <-----   atgatgttttaaaacgttttcacaatttattttttcttattttaaatagattttagggaaaaaattttggaaaaaaatcttctgacacaaagaaatgtaa  174000                                          <---------ICU4                                      <---------AHL20(2)                                      --------->AHL20(2)                                      --------->ICU4                                             <---                                    <----------DOF2                                        --------->ANAC58                                  --------->LBD16                                          --------->ANAC46                    <-----------RAV1(1)   <-----------RAV1(1)----------->GT1               --------->ANAC58 ------->TEIL   --------->ANAC46  <------NtERF2            ----------->GT1                <---------ZAT18 ->TEIL    --------->ARR14(2)   <---------LBD16      <----------ID1       --------->At4g35610    ---- ------GT1 <---------ARR14(2)   <---------ZAT18    ---------->DOF2        <---------At4g35610 <------   ctggacctcatagaatccacgactgtcgctctagtccgcattaattgttgcataaaagacaaggagaaaaaatgttagcagaaaatgaattgcacgcttt  174100  Previous    Next  AGI:  At5g01410.1    Description:  PDX1 (PYRIDOXINE BIOSYNTHESIS 1.3); protein heterodimerization/ protein homodimerization. Identical to Pyridoxal biosynthesis protein PDX1.3 (PDX13) [Arabidopsis Thaliana] (GB:Q8L940;GB:Q3KRU4;GB:Q9M032); similar to ATPDX1.1 (PYRIDOXINE BIOSYNTHESIS 1.1), protein heterodimerization [Arabidopsis thaliana] (TAIR:AT2G38230.1); similar to Probable pyridoxal biosynthesis protein PDX1 (Ethylene-inducible protein HEVER) (GB:Q39963); contains InterPro domain Ribulose-phosphate binding barrel; (InterPro:IPR011060); contains InterPro domain Vitamin B6 biosynthesis protein (InterPro:IPR001852) Range:  from: 172317    to: 173613    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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