Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                           <---------At4g35610                                                     <-----------RAV1(1)                                                     <---------ZAT6                                                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                               --------->ANAC58                             ---------                                               --------->ANAC46                          --------->HSFB2a(2)                                               --------->ANAC58                 ----------->HVH21                                              --------->SPL7                   --------->LBD16                                            <---------SPL7                    <---------ANAC46                                         <-----------HVH21            xxxxxxxxxxxxxxxx>smallRNA(s)                                        <----------DOF2  --------->At4g35610  <---------ANAC58                                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    <---------ANAC58 ------           <------ZmHOX2a(1)        <xxxxxxxxxxxxxxxxsmallRNA(i)    --------->SPL7---------->DOF2        <-----------RAV1(2) <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  --------------->AtSPL3   <---------HSFB2a(2)   caagaagcaggcaggaggctagacttgtgtaagtcgtaaaccctttcgcacggtactgttgctgaagcagtacgttgttcgcgtgaaaggtcgagaaagt  69500                                  <---------ALFIN1                                  --------->ANAC46                                 --------->ZAT14                                      --------->ANAC58                                 <---------ZAT14                                      --------->ANAC46                                <---------ALFIN1         --------->YAB1               --------->ANAC58                               --------->ANAC46          --------->TOE1(3)           <---------LBD16                   <-----------HVH21                     --------->TOE2(3)           --------->LBD16             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <<<<<<<<<ARR2               <---------ALFIN1-             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <<<<<<<<<ARR1              <---------REM1(2)-             <xxxxxxxxxxxxxxxxsmallRNA(i) <-----------RAV1(2)                     =================== <---------HSFB2a(2)    <---------DAG2 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)       =================== --------->HSFB2a(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                 <-----------GT1 --------- ->DOF2   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)          --------->GLK1(2) ----------------------->TaNAC69(2) ----------------->TaNAC69(2)<-----------GT1 <------ZmHOX2a(1)---------->DOF2     ------>ZmHOX2a(1)<-   tttctcgagcatgtcattctcagtcaccttctcaccacacagcctcaggatagagacaatcttaaaaagctcggagttatactcctccacggatttataa  69600            xxxxxxxxxxxxxxxx>smallRNA(s)            <xxxxxxxxxxxxxxxxsmallRNA(i)           <xxxxxxxxxxxxxxxxsmallRNA(s)         <---------TOE2(3)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     ------>ZmHOX2a(2)                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     ===============================RAV <-------GAMYB     ----------->RAV1(2)               --------->MYB111(2)    <------ZmHOX2a(2)                  --------->MYB111(1)   <---------ARR11(3)                  --------->MYB55(2)   <---------ARR14(2)                  --------->MYB46(2)   --------->ARR11(3) <---------ICU4   <---------MYB46(3)   --------->ARR14(2)<---------ATHB12  --------->MYB52(2) <---------MYB46(3)                       <- -------->LBD16--------->ANAC58 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                             <-- ----->ZmHOX2a(1)  --------->WOX13(1) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                    ------ ===========HOX2a_HOX2a         <----------DOF2       <---------AtMYB61          --------->ANAC58 --- ==========HOX2a_HOX2a--------->YAB1  <--------P    <----------DOF2 <---------GLK1(2)---------->DOF2- >YAB1 ------>ZmHOX2a(1)<-----------RAV1(1)         ------>ZmHOX2a(1)            --------->ANAC46 --- --------LBD16 --------->ANAC58 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            --------->ANAC58 <--   tcctggatcctgaggttaagccaatcatgttgggctttgggtagttgtatggtcctttggtggtcatatcgattcttcaactcaagccaaagctcaagtg  69700                                                             ------>ZmHOX2a(2)           <---------------AtSPL8                           <------ZmHOX2a(2)           <---------------AtSPL3                          --------->ARR14(2)  ------>ZmHOX2a(1)                                <---------YAB1 -----ZmHOX2a(2)                                <---------SPL7 -------ARR11(3)                               <---------ANAC58 --->ALFIN1--------->MYB59                     <---------ANAC58  ----------->HVH21 ------>ARR11(3)                     <----------DOF2       <---------ARR11(3)           <-----------GT1 ----->ZmHOX2a(2)            <---------ARR11(3)<---------ANAC46----------->RAV1(2)  <---------MYB52(1) ------>ARR14(2)       <-----------GT1   <---------YAB1------>ZmHOX2a(2) --------->WRKY12 -------ARR14(2) --------->ICU4xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     --------->WRKY38(1)   gatcctcgactgtaaggtactgatttttcaagctctctgctatatgatggcgtatgatcgagatcgcctgatactttgacctctccgttttctcatttcc  69800                                                                                           <---------At4g35610                                                                                        --------->ZAT18                                                                            --------->At4g35610                                       --------->YAB1        <---------TOE1(3)          <---------ZAT14                                --------->At4g35610          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             <------NtERF2  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        <---------At4g35610<--------           <---------DEAR3(1)   <---------At4g35610          <---------TOE2(3)     xxxxxxxxxxxxxxxxxx       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)<-------      <---------ZAT14     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)         <-----------GT1  --------->ZAT14      --------->ZAT14   <xxxxxxxxxxxxxxxxsmallRNA(i)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)--------->At4g35610      <---------ZAT18------>ZmHOX2a(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------At4g35610<-----   ---------->DOF2   <----------DOF2  xxxxxxxxxxxxxxxx>smallRNA(s)   <-----------HVH21 --------->ALFIN1   ttccacaatgcactcggcgagtcctttagacttcagctcaatcttggtgtccaatgcccattgaaggtaattgtcaccagatgccaagagtgcagcgtac  69900                                                  <---------ANAC55(2)                                              --------->ARR11(3)                                         ------------>CBF                                     <---------ANAC55(1)                                     <---------ANAC55(2)          <---------At4g35610        --------->ANAC55(2)   --------------------->WRI1        <---------ANAC58             <---------YAB1 -ANAC46  <---------ZAT2             <---------ANAC58          <---------ATHB12                   --- xxx>smallRNA(se3)        <---------ATHB12    <---------ARR11(3)--------->YAB1                 <----- --ZAT18  --------->At4g35610      --------->CCA1(2)    <----------ID1               ---------->DOF2 --TEIL <---------ZAT18*TSS        <-----------GT1--------->ANAC55(2)      --------->ICU4     <------   atgaggtttgtgagcttcgacatctacaatgaagaagttacgagtcaatatcatgtaatggacaaatcataaatgtcatgaagaccataaatcgattttc  70000                                                                                       <------ZmHOX2a(1)                                                                                    <xxxxxxxxxxxxxxxx                           ---------->ID1                                  <---------DAG2        <---                        <----------DOF2                                    <----------DOF2   <-------               <-----------GT1                                  <------ZmHOX2a(1) <----------DOF2<---  <-----------GT1 <----------DOF2  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <---------DAG2 xxxxxxxxxxxx --->ZmHOX2a(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)            --------->YAB1<-----------------AG ------GT1 <---------ARR14(2)   <----------DOF2       <----------DOF2  <-----------GT1 --------->YAB1 -----GT1  --------->ARR14(2) ------>ZmHOX2a(1)     ------>ZmHOX2a(1) <-----------GT1<---------TOE2(3)   ctatttactcaaggatttgactttctcttttcctctttcccttgggacaatttcctcttttctctaggataatttcccttttctctttaggataatttcc  70100          <------ZmHOX2a(1)          --------->YAB1       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <----------DOF2<----------DOF2                                  <-----------------AGL1 ---------->ID1     <---------DAG2xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                  <----------DOF2 xxxxxxxsmallRNA(si3)   ---------->ID1       <----------DOF2      <----------DOF2       <---------DAG2 -------DOF2    <-----------GT1  <------ZmHOX2a(1)             <-----------GT1        <-------------- ----GT1<---------TOE2(3)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)----------------->AGL1   xxxxxxx ------DAG2 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)             <<<<<<<<<<GT-3b         --------------- xxxxxxxxxxx>smallRNA(si3)  <----------DOF2------>ZmHOX2a(1)<---------YAB1        xxxxxxxxxxxxxxxxxxx   tttttctctttaggataatttcctttttctctttaggagaatttcctctttctctagggattatttttctttccctcttgggagagtttcctttttcggt  70200                                                                                                  ---              <----------DOF2                                                                    ----   --------->At5g28300                                                                      ---------  ----------->GT1                             <---------AtMYB61                <-----------GT1   <--- ---AGL1   <-----------GT1           ------>ZmHOX2a(1)          ----------->RAV1(1)         --------- xxxxxxxxx>smallRNA(i)              --------->TOE2(3) <---------TOE1(3)  <------ZmHOX2a(1)  --------- -->AGL1  <-----------GT1        <-----------GT1      <---------TOE2(3)<---------TOE2(3)    --------- xxxxx>smallRNA(fl3)      <-----------GT1   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        --------->AtLEC2   cttagggtaaattttcctttttagcgattttctattttccttagggttttggttttagggtttatgcaacatgaaggattttaacaattcatgcatgcaa  70300       --------->WOX13(1)                   <---------ANAC55(2)     <---------ATHB12                       --------->ANAC58 ------>YAB1                                --------->ANAC46 ----->MYB46(3)                             --------->ANAC58 >ANAC58                                    --------->ANAC55(2)         --------->YAB1 ------ATHB12                             --------->YAB1               <---------YAB1     <---------TOE2(3) >AtLEC2                ------>ZmHOX2a(1)<---------ATHB12          ------>ZmHOX2a(2)      <---------TOE1(3) >ANAC58  --------->YAB1<xxxxxxxxxxxxxxxxxxxxsmallRNA(l2)<---------TOE1(3)            <----------DOF2 >ANAC46 <---------ATHB12              --------->WOX13(1)<---------TOE2(3)   <---------ZAT6   ccatgaaatcaatcaaactaaacatcctagacaacttcaaacaatcacgaaatagaattagggttttgatccgattatagtgttttcgatttagggttta  70400  Previous    Next  AGI:  At5g01185.1    Description:  transposable element gene. copia-like retrotransposon family, has a 1.4e-123 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum) Range:  from: 65274    to: 69923    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version