Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                             <------NtERF2                                                                          <---------RAP2.6(3)                                                            --------->ANAC55(2)                                                            <---------ANAC55(1)    --------->YAB1                                                            <---------ANAC55(2)    ----------->GT1                                                       <-------TEIL       --------->LBD16                     --------->ANAC46                 <------ZmHOX2a(2)  --------->LBD16                     --------->ANAC58                --------->AGP1      --------->ETT(1) <------ZmHOX2a(2)        <---------MYB52(1)<---------At4g35610   --------->CCA1(2)       <---------LBD16  --------->ARR11(3) ---ZAT14            --------->ANAC58          <---------ARR11(3)      --------->MYB52(1)<---------ARR11(3) ---ZAT18   <---------ANAC58                   --------->ARR11(3) <---------AHL20(2)  <---------TOE1(2) -->ZAT14   <---------ANAC58             <-----------GT1    --------->ANAC55(1)  ------->TEIL   -----   cttacgagctgtttgcttagtacgagccatctgttcaacaaattaacaagatttagatccatacgtattcaattgccggaatgtatcgtaagatcaacac  18558300                                                                --------->DEAR3(1)                                                             ------->GAMYB                                                --------->TOE2(3)                <---------ICU4                  --------->TOE1(3)                       ------->MYC3          <---------ARR14(2)              --------->YAB1    --------->MYB46(3)          <-------MYC3   ---------->DOF2                 --------->ANAC58      --------->MYB46(3) --------->GLK1(2) ---->ANAC46 --------->TOE2(3)     --------->ANAC58  <---------ATHB12--------->YAB1<-----------GT1   aaaaccaaagaaaatccctaattgcaatcgcataatcaagaaaatcaaaaccctaatcaacaatcgccgaataagaacaatctatttacacatgtgaaaa  18558400                                                                                             <-------                                                                                             <------ZmHOX2a(2)                                                                                      <---------HSFB2a(2)                                                                                      --------->HSFB2a(2)                                                                                      --------->ANAC46                   --------->HSFB2a(2)                                               <---------LBD16                   <---------HSFB2a(2)                                          <----------DOF2                   <---------------AGL15                                     <---------ARR11(3)                --------->GLK1(2)                                       --------->TOE2(3)   ---------               <---------GLK1(2)                                        --------->TOE1(3)   <--------     <---------GLK1(2)                                                  <---------MYB59--------->LBD16  --------->HSFB2a(2)   ---------->DOF2                      <-------TEIL    --------->ARR11(3)------   ctatcgagaatttcagagattctagacaaagaaactatctggtgatgaaatctagctatacgattcatctctaacctaaaatctttatccggaagatcat  18558500                                                            ------>MYB83                                                            ------>MYB46(1)                                                          --------->AtMYB61                      ----                                                       <---------ALFIN1               <------ZmHOX2a(2)                                                     --------->SPL7                  <-----------HVH21                                                   <---------SPL7         <---------MYB52(1)     <--- --YAB1              --------------->AGL15        <---------ANAC58   <---------ARR14(2)          ---- >ARR11(3)     <---------ICU4                     <---------ANAC58   --------->GLK1(2)=============== -ARR11(3)   <---------ARR11(3)                  --------------->AtSPL8 <---------HSFB2a(2)      <--- --->KAN4(2) --------->ARR11(3)                  --------------->AtSPL3 --------->HSFB2a(2)   -------   tcggcgaagaaacaagataatggccaagaatagaaactaatctcgcctaatttcgtaccacctatcgagcgattccagtagtttcacgatcaccgaaaaa  18558600       =======================HOX2a_HOX2a       <------ZmHOX2a(1)     --------->LBD16                --------->TOE2(3)    <---------HSFB2a(2)           ------->TEIL    <---------LBD16               --------->SPL7                                             <-------    --------->HSFB2a(2)       --------------->AtSPL8                              <---------ARR14(2) ----->AHL20(1)        ------>ZmHOX2a(2)                                          --------->ARR14(2) ------AHL20(1)      <---------ARR14(2)                                    <---------ZAT2  ---------- ----->ARR11(3)      --------->ARR14(2)                                    <---------At4g35610 =============HOX2a_HOX2a     <---------------AtSPL3                       --------->At4g35610 ------ARR11(3)     <------ZmHOX2a(1)                                      --------->ZAT2---------->DOF2 -->AHL20(2)  ---------->DOF2--------->GLK1(2)       <---------GLK1(2)     <---------GLK1(1) --------   atatttccaggaaaatcaaagaggatcgaagaatcgtacctcagaaaactctctagcttctccgaatttcaaacttgagctccgaattcgaaaaagataa  18558700                    <---------RAP2.6(2)                   --------->SPL7                 --------->REM1(2)                 <---------SPL7                 <---------ARR14(2)                                        --------->SPL7                 <---------ZAT14                                         ----------->HVH21                 --------->ARR14(2)       --------->ANAC58          <---------YAB1               <---------------AtSPL3<---------AHL20(2)         <---------AHL20(2)              <---------ANAC58       *TSS --------->ANAC46      --------->AHL20(2)              <---------ANAC58    --------->AHL20(2)          <-----------TBP----------->GT1              <------------------SPL14    --------->ANAC58   --------->ARR14(2) --ARR11(3)   <---------ANAC46    <---------AHL20(2)         <---------ARR14(2) ->GT1   <---------REM1(2)       <---------AHL20(2)    --------->DAG2    <---------SPL7     <-------- ->ARR11(3) --------->ANAC46     --------->AHL20(2)   ---------->DOF2   ------>ZmHOX2a(2)   ---------   tattgtcagtcttcacgcgtgtacggctattgatattaatttataggcaacgatggtaaagcggatttatatgatcggacggtttttatcgattatcaat  18558800                                                                           ==========================                                                                           ------>ZmHOX2a(2)                                                                          <------ZmHOX2a(2)                                                                          ===========================                                                                         <-----------ARR10                                                                         --------->ARR11(3)                                               <----------DOF2           <---------ARR14(2)                                --------->RVE1(1) <---------ANAC58       --------->AGP1                        ----------->GT1    ------->MYC2                  --------->ARR14(2)                       ----------->GT1     ------->MYC3                  <---------AGP1            <-                      <---------ANAC46     <-------MYC2                  <---------ARR11(3)       <--                     --------->SPL7        ------->MYC4                 <---------CCA1(2)         --- -YAB1             <---------SPL7  <-----------GT1<---------ANAC58------->GAMYB <----------DOF2  <--- --->CBF         <---------------AtSPL3    <-------MYC3        --------->MYB52(1)         -----------   gtgtttctcaagttttctaatcgtacgggtaaaaatatcacaacatgtgctttcttgcaccaattcaacggtccagatctagctttactggtttgacgag  18558900                                                     --------->At4g35610                                                    ------>ZmHOX2a(2)              --------->ATHB51                     <------ZmHOX2a(2)   <---------ALFIN1    <---------YAB1             <---------ARR14(2)   --------->AtMYB61<---------WOX13(1)         <------NtERF2                                     <--- ===HOX2a_HOX2a    <---------ANAC58            <---------ANAC46                                  ---- ===HOX2a_HOX2a    <---------ANAC58           <---------LBD16                          <------NtERF2 -----ZmHOX2a(2)  --------->ATHB12         <-----------HVH21            <---------ARR14(2)      <---- -------ARR11(3) <---------AHL20(2)      --------->MYB46(3)        <---------MYB52(1) <---------RAP2.6(3) ------>ARR11(3)<---------WOX13(1)       --------->DEAR3(2)       <---------SPL7      <-----------HVH21 ---ZmHOX2a(1)--------->ATHB12           <------------AtMYB77 <-----------GT1        --------->RAP2.6(2) >HVH21      <---------YAB1  --------->At4g35610  --------->ARR14(2)    --------->ARR14(2)    -------   gatcaccactgctacataattgattgctattggctgaatacaaaccgtcgcggatcgctgaaataaaccgttcggatttagtttaggccgtcacatcaat  18559000                                                      ----------->GT1                                                     --------------->AtSPL3                                                     --------->ANAC46                                                     --------->ANAC58                                                    ------->TEIL                                                    <-------TEIL                                                 <---------ANAC58                                                 --------->ANAC55(2)                                                 <---------ANAC58                                                 <---------ANAC55(2)                                                 <---------ANAC46                                                --------------->AtSPL3                                                <---------------AtSPL3                                              <---------MYB52(1)                                             <-------GAMYB                                             <----------DOF2  <---------AHL20(1)                                            <---------ANAC58  <---------AHL20(2)                                            <---------ANAC58  --------->AHL20(1)                                           <-------TEIL       --------->AHL20(2)                                        <------MYB83--------->SPL7 <---------MYB46(3)                                        <------MYB46(1)      --------->AHL20(2)                                       <---------AtMYB61   --------->TOE2(3)                 --------                                       <---------MYB46(3)<-------TEIL                       <-------TEIL     ----------->HVH21               <---------MYB52(1)--------->At5g28300                  --------- ------AHL20(2)                 --------->GLK1(2)<---------ANAC55(1)<---------ANAC58     --------->LBD16 ----->AHL20(2)                 <---------ARR14(2) <---------SPL1(1)<---------ANAC58   <---------LBD16 -----ATHB12        <------------CBF <------------CBF--------->ANAC58         --------->WRKY18(1)*TSS -->WOX13(1) ---------->DOF2    --------->ARR14(2)<---------SPL7<------------CBF    <----------DOF2 -   taatgggctcacagataaggcccattgaatacaaaatccgattggtgcgttacgtacggtacattaaattggttgcaccagtcaaactttccggttcagt  18559100   ------->GAMYB -------->P                                                                                        -- ------->AtSPL3                <-----------HVH21             --------->CCA1(2)               -------- >ZAT14         --------->ATERF1(1)            <---------GLK1(2)                            <-------- -------->MYB52(1) <------NtERF2<---------MYB52(1)<---------ICU4                   --------------->AGL15   actaaccgaaatattggagtcgtcgtcttcttccgtcaagaagaaaccagaatttttacagagatttgaaaatcgtctccattttctaggtatagaatct  18559200  Previous    Next  AGI:  At4g40040.1    Description:  histone H3.2. Identical to Histone H3.3 (HTR8) [Arabidopsis Thaliana] (GB:P59169;GB:Q6NR95); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G10980.1); similar to histone H3.2 [Arabidopsis thaliana] (TAIR:AT4G40030.3); similar to histone H3.2 [Arabidopsis thaliana] (TAIR:AT4G40030.2); similar to hypothetical protein [Vitis vinifera] (GB:CAN70652.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone H3; (InterPro:IPR000164) Range:  from: 18557181    to: 18558737    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g40042.1    Description:  signal peptidase. similar to signal peptidase [Arabidopsis thaliana] (TAIR:AT2G22425.1); similar to signal peptidase [Arabidopsis thaliana] (TAIR:AT2G22425.2); similar to Microsomal signal peptidase 12 kDa subunit family protein [Oryza sativa (japonica cultivar-group)] (GB:ABA98316.2); similar to hypothetical protein OsI_036933 [Oryza sativa (indica cultivar-group)] (GB:EAY82974.1); similar to hypothetical protein OsJ_034565 [Oryza sativa (japonica cultivar-group)] (GB:EAZ20356.1); contains InterPro domain Microsomal signal peptidase 12 kDa subunit; (InterPro:IPR009542) Range:  from: 18559097    to: 18559838    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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