Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                          --------->ANAC58                                                        --------->ANAC58                                                     <---------REM1(2)                                                 <-----------ARR10                                                 --------->ARR11(3)                                                 <---------ARR14(2)                              ----             <---------ANAC58                    --------->ARR14(2)                            ------      <-----------HVH21                          <---------ARR11(3)                            <----- -------->TOE1(3)                               <---------CCA1(2)                           <-------- -------->TOE2(3)       --------->ZAT6        --------->ANAC55(2)------->TEIL              <--------- ----------DOF2 <-----------HVH21       <----------DOF2 --------->ANAC46                  --------->ATHB12 --YAB1      <---------ANAC58 <---------ZAT6<-----------GT1------->TEIL---------->ID1  ---------->DOF2   aactttaatgtcaaaccgtgtcacttacactagtgtatatttctttttacatatctacacgaacatgaaacttgtcttctagttagtactaaagattgat  18542100                                                                                  xxxxxxxxxxxxxxxxxxx                                                                               <-------GAMYB                                                                              <------MYB46(1)                                                                  xxxxxxxxxxxxxxxx>smallRNA(s)                                                                  xxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                 xxxxxxxxxxxxxxx>smallRNA(se3)                                                                 xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                 xxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                 xxxxxxxxxxxxxxx>smallRNA(si3)                                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                 xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                 xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                 xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                 xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                 xxxxxxxxxxxxxxxx>smallRNA(se3)                                                                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                 xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                 xxxxxxxxxxxxxxx>smallRNA(le3)                                                                 xxxxxxxxxxxxxxxx>smallRNA(i)                                                                 xxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                 xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                 xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                 *TSS         <------MYB83                                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                                 xxxxxxxxxxxxxxxx>smallRNA(s)                                                                 xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                 xxxxxxxxxxxxxxx>smallRNA(fl3)                                                                 xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                 xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                 xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                 xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                   ------>ZmHOX2a(2)          <---------MYB46(3)                                                  <------ZmHOX2a(2)      <-----------RAV1(2)    <----------DOF2                              --------->ARR11(3)   --------->At4g35610 -->ZmHOX2a(2)                                   <---------ARR14(2)   <---------At4g35610<---------ANAC58 --->ARR11(3)                                    <---------ARR11(3)  xxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ----ARR11(3)                                    --------->ARR14(2)<---------MYB52(1)    <---------ANAC46 -WOX13(1)                         <---------ARR11(3)       xxxxxxxxxxxxxxxx>smallRNA(s) <---------ANAC58 ---CBF    <----------DOF2         --------->ARR11(3)  --------->HSFB2a(2)  <---------MYB52(1)   cttcgtctttcggctattcgtaaactagaaatgaacaaatctttagaaaacgatcttccaaaatggcccattagctcagttggttagagcgtcgtgctaa  18542200                      xxxxxxxxxxxxxxxx>smallRNA(s)                      xxxxxxxxxxxxxxxx>smallRNA(si3)                     xxxxxxxxxxxxxxxx>smallRNA(s)                    xxxxxxxxxxxxxxxx>smallRNA(s)                   xxxxxxxxxxxxxxxx>smallRNA(s)                  xxxxxxxxxxxxxxxx>smallRNA(i)                  xxxxxxxxxxxxxxxx>smallRNA(s)                                                ------>NtERF2                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                          --------                <-------TEIL                                                                 --------                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                        ---------               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                         ---------             <---------HSFB2a(1)                                                            ---------             --------->HSFB2a(1)                                                            ---------            <---------TOE2(2)                                                               <------NtERF2            <---------TOE1(2)                    <----------DOF2              --------->AHL20(2)           <-----------RAV1(2)                <---------ARR11(3)        ----------->GT1    ------>NtERF2       <-----------HVH21  <---------AtLEC2    --------->ARR11(3)       ---------->ID1      <---------ATERF1(1)      xxxxxxxxxxxxxxxx>smallRNA(si3)          <---------AHL20(1)     <---------ANAC58     <---------DEAR3(1)      xxxxxxxxxxxxxxx>smallRNA(si3)          --------->RVE1(1)       <---------ANAC58     --------->DEAR3(1)      xxxxxxxxxxxxxxx>smallRNA(le3)     --------->YAB1      <---------At4g35610 <-----------GT1<-----     <---------AtMYB61xxxxxxxxxxxxxxx>smallRNA(le3)       --------------------->WRI1    <---------ATERF1(1) x>smallRNA(fl3)xxxxxxxxxxxxxxxx>smallRNA(s) --------->CCA1(1)       <---------ANAC46  ----------->HVH21   taacgcgaaggtcgcaggttcgaaacctgcatgggccatttttcataatatctttttttttcttctgagtttcgtcgtaaataaacaatccgacgccgac  18542300         --------->ANAC46         --------->ANAC58                                                                         ---       --------->ATERF1(1)                                                                      -----       <---------ATERF1(1)                                                                      =====      --------->PCF2     <---------ANAC46                                                      ======      <---------TCP15(1) <---------ANAC58                                                      ------     <---------PCF5    <---------ARR11(3)                                                     <------ ->DEAR3(1)            --------->ARR11(3)                               <-----------GT1       <------ --->HVH21         --------->YAB1     --------->ANAC55(2)              --------->ZAT14        <------ >ORA47(2)         <---------ICU4--------->At4g35610             ------->TEIL                 ------- >DEAR3(2)        <---------ATHB12    <---------ANAC55(2)     --------->ANAC46        <---------ZAT18 >RAP2.3(1) <---------ALFIN1     <---------At4g35610          --------->ANAC55(2) <-----------RAV1(1) >ATERF1(1)--------->MYB46(3)--------->PCF2             ------>ZmHOX2a(2)       ----------->RAV1(2) -NtERF2 --------->ANAC58<---------ANAC58           <---------YAB1    <----------DOF2 <---------At4g35610   ggttttgggaccccccactaatcaatatcgtgtcccgctcacttaacccaaaatatgatcccctacgtacctctttactctcttctggtgctcccaacaa  18542400                       <-------MYC3                      <---------ARR11(3)                       ------->MYC2                      --------->ARR11(3)                       <-------MYC2                    <---------YAB1                       ------->MYC3              ------->MYC2                      --------->TGA1a            <-------MYC4                      <---------TGA1a            <-------MYC3                      --------->O2               ------->MYC3                      <---------ANAC58           <-------MYC2                      <---------ANAC46           ------->PIF5                      <---------ANAC58           <-------PIF5                      <---------ANAC55(2)        ------->MYC4 ------>YAB1          <---------O2              <---------O2 --->P                <---------ANAC55(1)       --------->ANAC46 ===============================MYC_MYB         --------->ANAC55(2) ===============================MYC_MYB         --------->O2 ->GAMYB              --------->ANAC55(2)       --------->TGA1a ---MYB55(2)          ============================bZIP_DOF ------>ZmHOX2a(2) ---MYB111(2)     <-----------HVH21    <----------DOF2 --------->ICU4 ---MYB111(1)<---------GLK1(1)         ===================bZIP_DOF                                 -- -->MYB46(3) --------->GLK1(1) <---------ALFIN1 <---------TGA1a              ------------>CBF    <---   ccatacttcgtctcgatttccatcacgtgttctacacttctctttattccacgtgtcatgatcttggctcatagtcactctcaattaccaaagactctca  18542500                                            --------->YAB1                                           <---------ATHB12                                  --------->ANAC58                                  --------->ANAC58                                 --------->WOX13(1)          ------------>CBF      ---------->DOF2      <------ZmHOX2a(2)    --------->AHL20(2)                  --------->AHL20(2)     --------->ARR11(3)    <---------AHL20(2)*TSS              <---------AHL20(2)           ---------     <---------ARR11(3)   --------->AHL20(2)<---------ICU4 <----------DOF2           <-----------HVH21 ------->ANAC46      ------------>CBF  ------------>CBF    <---------DAG2         ------>ZmHOX2a(1) ------ALFIN1    --------->ZAT6<---------ATHB12  --------->At4g35610<-----------GT1 <-----------RAV1(1)   cacactagatcatacaataacacaacaatttaaatcaagcagtcaataatcagccaactagctttttaattttctctacaattcctctgtcgctctcacc  18542600                                      ------>ZmHOX2a(2)                                     --------->GLK1(1)                                     <------ZmHOX2a(2)                            --------->ANAC46     --------->At4g35610    --------->ANAC58   --------->TOE2(2) --------->MYB52(1)      --------->MYB46(3)    --------->TOE1(2)                         --------->ALFIN1 -->HVH21--------->REM1(1)  --------->ANAC58  ----------->RAV1(2)                    <---------ZAT14   agttaacagctacagcacaaaactgtaaccacgcttccgatctctaaaacctgagagagagagagagagagagagagagagacagagagaagtgtttcaa  18542700                                     <------NtERF2                                     --------->RAP2.3(1)                                     --------->ATERF1(1)                                    <---------ERF1                                    <---------ATERF1(1)                                    ------>NtERF2                                    <---------ORA47(2)                                    <---------RAP2.6(1)                                    <---------RAP2.3(1)                                    <---------DEAR3(2)                                    <---------DEAR4(2)                                    <---------RRTF1(1)                                   <---------RRTF1(2)                                   <---------RAP2.3(3)                                        <------                                   <---------DEAR3(1)                                        <-------GAMYB                                   <---------RAP2.3(2)                                      <--------                                   --------->DEAR3(1)                                       ---------                                   <---------RRTF1(3)                                       <--------                              --------->CCA1(2)                                             <--------                             <---------ARR14(2)                                           <---------At4g35610                             --------->ARR11(1)                                         <---------RAP2.6(2)                             --------->ARR14(2)                                        <-------TEIL -                            <------NtERF2                                             --------->ARR14(1)                          <---------ANAC46                                            --------->GLK1(2)                         <------NtERF2          ---------->DOF2                       --------->CCA1(2)                       --------->ALFIN1    <---------LBD16                           --------->ARR14(2)                   <------NtERF2  <---------ABI4(1)        <---------ANAC55(1)       <---------ARR14(2)                  --------->LBD16 --------->ATERF1(1)      <---------ANAC58          --------->ARR11(1)                  <------NtERF2  <---------RAP2.3(1)       --------->ANAC55(2)       <---------GLK1(2)                <---------LBD16--------->SPL7--------->LBD16      ---------->DOF2   <---------GLK1(1)        --------->REM1(2)--------->ATERF1(1)<---------LBD16<---------ANAC58         --------->GLK1(1)     <---------ANAC58  <---------DEAR3(1)  <---------ANAC46<---------ANAC46         <---------HSFB2a(1)     <---------ANAC46 --------->ATERF1(1)<---------ARR14(2)<---------ANAC55(2)      --------->HSFB2a(1)     <---------ANAC58 <------ZmHOX2a(1)------>NtERF2     <---------TGA2(2)         ----------->ARR10<   tagtttggcgtgaagatggccggaggaggcggatacggcggcgcatcggggaaagttgattacgtcttcaaagttgttctaatcggagattcggctgttg  18542800                                                                  <------NtERF2                                                                --------->DEAR3(1)                                                             <---------DEAR3(1)                                                          --------->AtMYB61                                                         --------->MYB46(3) ---MYB52(1)                                           --------->RAP2.6(2) -MYB46(3)                                          --------->ANAC58 >MYB55(2)                                          --------->ANAC58 --DOF2 <---------MYB111(1)   <-----------------------TaNAC69(2)<---------DEAR3(1) ---RAV1(1)        <---------GLK1(2)              ---------->DOF2------>NtERF2 --------------->AtSPL8 -------->GLK1(1)  <---------ARR14(2)        <---------GLK1(2)  <---------ANAC46   --------->SPL7 ---------GLK1(1)  --------->ARR14(2)   <---------AtLEC2------>NtERF2          --------------->AtSPL3   ggaaatcgcaactacttgctcgattcgctagagacgaattcagcatggattctaaagccaccatcggcgtcgagttccaaactcgtaccctctccattga  18542900                          --------->ARR14(2)                     ==========================HOX2a_HOX2a                     ------>ZmHOX2a(2)                    <------ZmHOX2a(2)                    --------->CCA1(2)          <-------TEIL                    ===========================HOX2a_HOX2a  --------->ARR14(1)                   --------->ARR11(3)      <---------------AtSPL8                   <---------ARR11(3)      --------->DAG2   --------->GLK1(2)                   --------->ARR14(2)      <---------------AtSPL3                   <---------AGP1          --------------->AtSPL3                   --------->AGP1        ---------->DOF2   --------->ARR11(3)                   <---------ARR14(2)   <------ZmHOX2a(1)  <---------GLK1(2)                  <---------CCA1(2)  <-----------RAV1(2)   <---------ARR14(2)           <---------TOE1(3)    <---------MYB52(1)         --------->ARR14(2) --------->YAB1           <---------TOE2(3)   <---------At4g35610       <---------TOE2(3)    --------->TOE2(3)          ---------->DOF2 <---------ARR14(2) --------->TOE1(2)      <----------DOF2   --------->LBD16  ---------->DOF2----------->ARR10 <-----------HVH21     ----------->ARR10 <---------GLK1(2)   <-----   acaaaaaagcattaaggctcagatctgggataccgctggtcaggaaaggtacgatttctaagattctctgcgttttggaatcttaatccgaagaatttta  18543000  Previous    Next  AGI:  At4g39980.1    Description:  DHS1 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE 1); 3-deoxy-7-phosphoheptulonate synthase. Identical to Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor (DHS1) [Arabidopsis Thaliana] (GB:P29976;GB:Q9SMQ7); similar to DHS2 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE), 3-deoxy-7-phosphoheptulonate synthase [Arabidopsis thaliana] (TAIR:AT4G33510.1); similar to DHS2 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE) [Arabidopsis thaliana] (TAIR:AT4G33510.2); similar to 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetas Range:  from: 18539569    to: 18542087    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g39985.1    Description:  pre-tRNA. tRNA-Ile (anticodon: AAT) Range:  from: 18542165    to: 18542238    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g39986.1    Description:  unknown protein Range:  from: 18542343    to: 18542459    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g39990.1    Description:  ATGB3/ATRAB11G/ATRABA4B (GTP-BINDING PROTEIN 3); GTP binding. similar to AtRABA4a (Arabidopsis Rab GTPase homolog A4a), GTP binding [Arabidopsis thaliana] (TAIR:AT5G65270.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN70163.1); contains InterPro domain Rab11-related (InterPro:IPR015595); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras (InterPro:IPR013753); contains InterPro domain Small GTP-binding protein; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579) Range:  from: 18542545    to: 18543972    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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