Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           <------ZmHOX2a(1)                                                                                      <-----------RAV1(2)                     <---------ALFIN1                                           --------->RAP2.6(3)                   --------->ANAC58                                            <---------ARR14(2)                 <---------ALFIN1                                              --------->MYB52(1)               --------->AtMYB61             ----------->HVH21                 --------->ARR14(2)         --------->ANAC46 ----------->HVH21 <-----------HVH21               <---------HSFB2a(2) --------bZIP60(1) --------->ANAC58         <-----------TGA1                --------->HSFB2a(2)   --- ------->bZIP60(1) <---------ALFIN1        --------->bZIP60(2)         ===========================RAV ---->WRKY12 -------->P  <-----------HVH21 --------->ANAC46            <-----------RAV1(1)        <--   gacctcagttctcgctaccacacacactgtgacccaaggctgaacgcgtcacagtctcttgaacttgccttcattgttgcagaacggctcaggaagagaa  18541800             --------->ALFIN1           <---------ANAC46  <-----------ARR10           <---------ANAC58  <---------ARR14(2)                                                <-----           <---------ANAC58  --------->ARR14(2)                                                <-----          <------NtERF2     <---------MYB52(1)     <---------YAB1                             <------    <--------P    <---------ANAC46             <---------DAG2             <----------DOF2     <------   <---------MYB52(1)    <---------LBD16       <----------DOF2  --------->ARR11(3)          <-------GAMYB ------>MYB52(1)  <---------ANAC58        <-----------GT1       <-----------ARR10------>ZmHOX2a(1) -------ARR14(2)  <---------ANAC58   <----------DOF2            <---------ARR11(3) ----------->HVH21   gaacgggtagccagcgtgtgtcttgagtccggttcttcccttttatacactttttgattccaaacaaatcttttctctttgtcctgtgactgtgagttgg  18541900                                                                          <-----------HVH21                                                                         --------->bZIP60(2)                                                               <---------ETT(2)   <---------ICU4                                              --------->ETT(2)  --------->ICU4                                               --------->ZAT14 <----------DOF2                                               <---------ZAT14                      < -MYB83  <---------MYB59               <------ZmHOX2a(1)  --------->At4g35610                <------- -MYB46(1)                          <---------HSFB2a(2)   <---------At4g35610            <----------DOF2 ---MYB46(3)              ---------->DOF2 <------ZmHOX2a(1) <---------ANAC46  --------->bZIP60(1)   - ---AtMYB61      ---------->DOF2    --------->HSFB2a(2)  <-----------RAV1(1)  <---------bZIP60(1)   -   tgtctttatgacctaagttaaaagccccaaaagcctctctaggaggagtaaacctgtttctgctgtggacagaccatgtcatgtcattgttctttatgtt  18542000                                                        --------->ANAC58                                                        --------->ANAC46                                                     <---------REM1(2)                                                 --------->ARR11(3)                                                 <---------ARR11(3)                                                 <---------ARR14(2)                              ----             <---------ANAC58                    --------->ARR14(2)                            ------      <-----------HVH21                          <-----------ARR10                             <----- ----------DOF2 <-----------HVH21               <---------CCA1(2)                           <-------- --YAB1      <---------ANAC58                 --------->ANAC55(2)------->TEIL              <--------- -------->TOE2(3)             <---------ZAT6<-----------GT1------->TEIL---------->ID1     --------->ATHB12 -------->TOE1(3)       --------->ZAT6  <----------DOF2 --------->ANAC58               ---------->DOF2   aactttaatgtcaaaccgtgtcacttacactagtgtatatttctttttacatatctacacgaacatgaaacttgtcttctagttagtactaaagattgat  18542100                                                                                  xxxxxxxxxxxxxxxxxxx                                                                               <-------GAMYB                                                                              <------MYB46(1)                                                                  xxxxxxxxxxxxxxxx>smallRNA(s)                                                                  xxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                 xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                 xxxxxxxxxxxxxxx>smallRNA(si3)                                                                 xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                 xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                 xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                 xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                 xxxxxxxxxxxxxxx>smallRNA(le3)                                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                 xxxxxxxxxxxxxxxx>smallRNA(s)                                                                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                 xxxxxxxxxxxxxxxx>smallRNA(se3)                                                                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                 xxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                 xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                 xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                 xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                 xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                 xxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                 xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                 xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                 xxxxxxxxxxxxxxx>smallRNA(fl3)                                                                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                 xxxxxxxxxxxxxxx>smallRNA(se3)                                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                 xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                 xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                 *TSS         <---------MYB46(3)                                                                 xxxxxxxxxxxxxxxx>smallRNA(i)                                                   ------>ZmHOX2a(2)          <------MYB83                                                  <------ZmHOX2a(2)      <-----------RAV1(2)    <----------DOF2                              --------->ARR11(3)   <---------At4g35610 -->ZmHOX2a(2)                                   <---------ARR11(3)   --------->At4g35610<---------ANAC46 --->ARR11(3)                                    --------->ARR14(2)  xxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ----ARR11(3)                                    <---------ARR14(2)<---------MYB52(1)    <---------ANAC58 -WOX13(1)                         --------->ARR11(3)       xxxxxxxxxxxxxxxx>smallRNA(s) <---------ANAC58 ---CBF    <----------DOF2         <---------ARR11(3)  --------->HSFB2a(2)  <---------MYB52(1)   cttcgtctttcggctattcgtaaactagaaatgaacaaatctttagaaaacgatcttccaaaatggcccattagctcagttggttagagcgtcgtgctaa  18542200                      xxxxxxxxxxxxxxxx>smallRNA(si3)                      xxxxxxxxxxxxxxxx>smallRNA(s)                     xxxxxxxxxxxxxxxx>smallRNA(s)                    xxxxxxxxxxxxxxxx>smallRNA(s)                   xxxxxxxxxxxxxxxx>smallRNA(s)                  xxxxxxxxxxxxxxxx>smallRNA(i)                  xxxxxxxxxxxxxxxx>smallRNA(s)                                                ------>NtERF2                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                          --------                xxxxxxxxxxxxxxxx>smallRNA(s)                                                 --------                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                        ---------               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                         ---------             --------->HSFB2a(1)                                                            ---------             <---------HSFB2a(1)                                                            ---------            <---------TOE1(2)                                                               <------NtERF2            <---------TOE2(2)                    <----------DOF2              --------->AHL20(2)           <-----------RAV1(2)                <---------ARR11(3)        ----------->GT1    ------>NtERF2       <-----------HVH21  <---------AtLEC2    --------->ARR11(3)       ---------->ID1      <---------ATERF1(1)      xxxxxxxxxxxxxxx>smallRNA(le3)           <---------AHL20(1)     <---------ANAC58     --------->DEAR3(1)      xxxxxxxxxxxxxxxx>smallRNA(si3)         --------->RVE1(1)       <---------ANAC46     <---------DEAR3(1)      xxxxxxxxxxxxxxx>smallRNA(si3)          --------->CCA1(1)       <---------ANAC58   <---------ATERF1(1)     <---------AtMYB61xxxxxxxxxxxxxxx>smallRNA(le3)         <---------At4g35610 <-----------GT1<----- x>smallRNA(fl3)<-------TEIL            --------->YAB1    --------------------->WRI1   ----------->HVH21   taacgcgaaggtcgcaggttcgaaacctgcatgggccatttttcataatatctttttttttcttctgagtttcgtcgtaaataaacaatccgacgccgac  18542300         --------->ANAC58         --------->ANAC46                                                                         ---       --------->ATERF1(1)                                                                      =====       <---------ATERF1(1)                                                                      -----      --------->PCF2     <---------ANAC58                                                      ------      <---------TCP15(1) <---------ANAC58                                                      ======     <---------PCF5    <---------ARR11(3)                                                     <------ --->HVH21             --------->ARR11(3)                               <-----------GT1       ------- ->DEAR3(1)        --------->YAB1     <---------ANAC55(2)              --------->ZAT14        <------ >RAP2.3(1)        <---------ICU4--------->At4g35610             ------->TEIL                 <------ >ORA47(2)        <---------ATHB12    --------->ANAC55(2)     --------->ANAC55(2)     <---------ZAT18 >DEAR3(2)  <---------ALFIN1     <---------At4g35610          --------->ANAC46    <-----------RAV1(1) >ATERF1(1)--------->MYB46(3)--------->PCF2             ------>ZmHOX2a(2)       ----------->RAV1(2) -NtERF2 --------->ANAC58<---------ANAC46           <---------YAB1    <----------DOF2 <---------At4g35610   ggttttgggaccccccactaatcaatatcgtgtcccgctcacttaacccaaaatatgatcccctacgtacctctttactctcttctggtgctcccaacaa  18542400                       <-------MYC2                      <---------ARR11(3)                       ------->MYC3                      --------->ARR11(3)                       ------->MYC2                    <---------YAB1                       <-------MYC3              <-------MYC2                      --------->TGA1a            ------->MYC2                      <---------ANAC58           <-------PIF5                      --------->O2               ------->MYC3                      <---------ANAC55(1)        <-------MYC4                      --------->ANAC55(2)        ------->PIF5                      <---------ANAC46           <-------MYC3                      <---------ANAC55(2)        ------->MYC4 ------>YAB1          <---------O2              <---------TGA1a ===============================MYC_MYB         --------->TGA1a --->P                ============================bZIP_DOF ------>ZmHOX2a(2) ->GAMYB              <---------TGA1a           --------->O2 ===============================MYC_MYB         --------->ANAC46 ---MYB111(1)         <---------ANAC58          --------->ANAC55(2) -->MYB46(3)      <-----------HVH21    <----------DOF2 --------->ICU4 ---MYB55(2) <---------GLK1(1)         ===================bZIP_DOF                                 -- ---MYB111(2)--------->GLK1(1) <---------ALFIN1 <---------O2                 ------------>CBF    <---   ccatacttcgtctcgatttccatcacgtgttctacacttctctttattccacgtgtcatgatcttggctcatagtcactctcaattaccaaagactctca  18542500                                            <---------ICU4                                           <---------ATHB12                                  --------->ANAC58                                  --------->ANAC58                                 --------->WOX13(1)          ------------>CBF      ---------->DOF2      <------ZmHOX2a(2)    --------->AHL20(2)                  --------->AHL20(2)     <---------ARR11(3)    <---------AHL20(2)*TSS              <---------AHL20(2)           ---------     --------->ARR11(3)   --------->AHL20(2)--------->YAB1 <---------DAG2            <-----------HVH21 ------->ANAC46      ------------>CBF  ------------>CBF    <----------DOF2        ------>ZmHOX2a(1) ------ALFIN1    --------->ZAT6<---------ATHB12  --------->At4g35610<-----------GT1 <-----------RAV1(1)   cacactagatcatacaataacacaacaatttaaatcaagcagtcaataatcagccaactagctttttaattttctctacaattcctctgtcgctctcacc  18542600                                      ------>ZmHOX2a(2)                                     <------ZmHOX2a(2)                                     --------->GLK1(1)                            --------->ANAC46     --------->At4g35610    --------->ANAC58   --------->TOE2(2) --------->MYB52(1)      --------->MYB46(3)    --------->TOE1(2)                         --------->ALFIN1 -->HVH21--------->REM1(1)  --------->ANAC58  ----------->RAV1(2)                    <---------ZAT14   agttaacagctacagcacaaaactgtaaccacgcttccgatctctaaaacctgagagagagagagagagagagagagagagacagagagaagtgtttcaa  18542700  Previous    Next  AGI:  At4g39980.1    Description:  DHS1 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE 1); 3-deoxy-7-phosphoheptulonate synthase. Identical to Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor (DHS1) [Arabidopsis Thaliana] (GB:P29976;GB:Q9SMQ7); similar to DHS2 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE), 3-deoxy-7-phosphoheptulonate synthase [Arabidopsis thaliana] (TAIR:AT4G33510.1); similar to DHS2 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE) [Arabidopsis thaliana] (TAIR:AT4G33510.2); similar to 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetas Range:  from: 18539569    to: 18542087    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g39985.1    Description:  pre-tRNA. tRNA-Ile (anticodon: AAT) Range:  from: 18542165    to: 18542238    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g39986.1    Description:  unknown protein Range:  from: 18542343    to: 18542459    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g39990.1    Description:  ATGB3/ATRAB11G/ATRABA4B (GTP-BINDING PROTEIN 3); GTP binding. similar to AtRABA4a (Arabidopsis Rab GTPase homolog A4a), GTP binding [Arabidopsis thaliana] (TAIR:AT5G65270.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN70163.1); contains InterPro domain Rab11-related (InterPro:IPR015595); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras (InterPro:IPR013753); contains InterPro domain Small GTP-binding protein; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579) Range:  from: 18542545    to: 18543972    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version